Rh2BG040600

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007196
Physical Location & Seq
Reverse (-)
2820522 .. 2824109
3588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG040600.1

Sequence Viewer

Length: 678 bp
ATGCAGCGGCAGCTCTTGAACAAGCTCAGCTGGAGAGCCATCAATGGATTTGCTCAGTTCACTCAAAGGAGAGCGATGCACGATAGGAACAAGAAGGCAATGGAGTTAATAGCCAAAGGGTGGAGCGCTCTGAAGGAAGTTGATAGAGTCATTGATTACTGCGAGCTCAATGATCGCCGCCTCATTCCTTTATTAAGGGCAGCAAAAGATAATTTTGAGTTGGCTCTAGAGACTGACAACTCAAATACCCATGCCAGGTATTGGTTGTCCAGATTGCATTTGAAATACCATGTCCCAGGGGCGTGCAAAGCTATAGGAGCTGCTTTGTTAGTTGAAGCGGCAAATATGGGTGATGCAGATGCACAATATGAACTTGCTTGTCGTCTTAGAGTTGAGAATGAATATGTCCAATCGGATCAACAAGCTTTCCATTATCTGGAGAAGGCAGTTGACCAGTTGCATCCTGGTGCTCTTTACCTTCTGGGTGCTGTGTATCTGACCGGAGACTGTGTCAAGAAAGATGTTGCCTCCGCCTTATGGTGTTTCCATAGGGCATCAGAGAAGGGACATGCTGGTGCAGCTATAGCATATGGGTCTCTTCTTCTTCAAGGTCTGTTTCTCCCCACCATGCTTCTTTTATGTTATTGCAGAATAATCGTCAAGATTCCCAACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

225

Amino Acids

25.46

Weight (kDa)

8.63

Isoelectric Point (pI)

25.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 157 - 190 4.3e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 120, 261, 436
AciI CCGC 4 cut(s) 7, 178, 338, 531
AclWI GGATC 1 cut(s) 423
AcuI CTGAAG 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 127
AfiI CCNNNNNNNGG 5 cut(s) 120, 255, 261, 436, 537
AgsI TTSAA 4 cut(s) 19, 283, 335, 608
AjnI CCWGG 3 cut(s) 254, 295, 463
AluBI AGCT 8 cut(s) 13, 25, 30, 166, 311, 320, 425, 581
AluI AGCT 8 cut(s) 13, 25, 30, 166, 311, 320, 425, 581
Alw21I GWGCWC 2 cut(s) 168, 472
Alw26I GTCTC 3 cut(s) 224, 498, 600
AlwI GGATC 1 cut(s) 423
Aor51HI AGCGCT 1 cut(s) 127
ApeKI GCWGC 5 cut(s) 4, 10, 200, 320, 578
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 362
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 168, 472
BbvI GCAGC 5 cut(s) 16, 22, 212, 307, 590
BccI CCATC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 637, 671
BciT130I CCWGG 3 cut(s) 256, 297, 465
BcoDI GTCTC 3 cut(s) 224, 498, 600
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 2 cut(s) 312, 582
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 8 cut(s) 5, 8, 11, 178, 201, 321, 339, 579
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 8 cut(s) 6, 9, 12, 179, 202, 322, 340, 580
Bme1390I CCNGG 3 cut(s) 256, 297, 465
BmrFI CCNGG 3 cut(s) 256, 297, 465
BmsI GCATC 5 cut(s) 66, 343, 349, 469, 563
BpmI CTGGAG 2 cut(s) 52, 458
Bpu1102I GCTNAGC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 295, 296
BsaWI WCCGGW 1 cut(s) 500
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 255, 261, 436, 537
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 3 cut(s) 256, 297, 465
BseDI CCNNGG 2 cut(s) 295, 296
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 5 cut(s) 120, 255, 261, 436, 537
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 40, 68
BseNI ACTGG 1 cut(s) 454
BseXI GCAGC 5 cut(s) 16, 22, 212, 307, 590
BsgI GTGCAG 1 cut(s) 597
BsiHKAI GWGCWC 2 cut(s) 168, 472
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 2 cut(s) 278, 579
BslI CCNNNNNNNGG 5 cut(s) 120, 255, 261, 436, 537
BsmAI GTCTC 3 cut(s) 224, 498, 600
BsmFI GGGAC 2 cut(s) 278, 579
Bso31I GGTCTC 1 cut(s) 600
Bsp1286I GDGCHC 2 cut(s) 168, 472
Bsp143I GATC 2 cut(s) 172, 415
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 4 cut(s) 7, 178, 338, 531
BspCNI CTCAG 2 cut(s) 39, 67
BspPI GGATC 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 600
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 295, 296
BssMI GATC 2 cut(s) 172, 415
Bst2UI CCWGG 3 cut(s) 256, 297, 465
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 1 cut(s) 603
BstC8I GCNNGC 2 cut(s) 164, 304
BstDEI CTNAG 3 cut(s) 26, 54, 386
BstF5I GGATG 1 cut(s) 460
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 175, 418
BstMAI GTCTC 3 cut(s) 224, 498, 600
BstMBI GATC 2 cut(s) 172, 415
BstMWI GCNNNNNNNGC 5 cut(s) 10, 308, 317, 578, 584
BstNI CCWGG 3 cut(s) 256, 297, 465
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 3 cut(s) 254, 295, 463
BstSFI CTRYAG 2 cut(s) 312, 582
BstV1I GCAGC 5 cut(s) 16, 22, 212, 307, 590
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 164, 304
CfoI GCGC 1 cut(s) 128
CviAII CATG 4 cut(s) 251, 290, 569, 628
DdeI CTNAG 3 cut(s) 26, 54, 386
DpnI GATC 2 cut(s) 174, 417
DpnII GATC 2 cut(s) 172, 415
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 1 cut(s) 520
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 600
Eco47III AGCGCT 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 3 cut(s) 254, 295, 463
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 4 cut(s) 254, 293, 572, 631
FaqI GGGAC 2 cut(s) 278, 579
FatI CATG 4 cut(s) 250, 289, 568, 627
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 8 cut(s) 5, 8, 11, 178, 201, 321, 339, 579
FokI GGATG 1 cut(s) 447
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 8 cut(s) 5, 8, 11, 178, 201, 321, 339, 579
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 127
GluI GCNGC 8 cut(s) 5, 8, 11, 178, 201, 321, 339, 579
GsuI CTGGAG 2 cut(s) 52, 458
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 1 cut(s) 501
HhaI GCGC 1 cut(s) 128
Hin1II CATG 4 cut(s) 254, 293, 572, 631
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 2 cut(s) 147, 664
HpaII CCGG 1 cut(s) 501
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 60, 451
Hpy188I TCNGA 4 cut(s) 132, 415, 498, 559
Hpy188III TCNNGA 6 cut(s) 16, 227, 270, 437, 514, 661
Hpy8I GTNNAC 2 cut(s) 60, 451
HpyAV CCTTC 5 cut(s) 88, 127, 436, 488, 556
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4V TGCA 9 cut(s) 4, 79, 277, 306, 356, 362, 460, 578, 648
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 308, 317, 578, 584
HpyF3I CTNAG 3 cut(s) 26, 54, 386
Hsp92II CATG 4 cut(s) 254, 293, 572, 631
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 172, 415
LmnI GCTCC 2 cut(s) 123, 317
Lsp1109I GCAGC 5 cut(s) 16, 22, 212, 307, 590
LweI GCATC 5 cut(s) 66, 343, 349, 469, 563
MaeI CTAG 1 cut(s) 227
MalI GATC 2 cut(s) 174, 417
MboI GATC 2 cut(s) 172, 415
MboII GAAGA 3 cut(s) 590, 593, 596
MhlI GDGCHC 2 cut(s) 168, 472
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 2 cut(s) 191, 538
MseI TTAA 2 cut(s) 107, 194
MslI CAYNNNNRTG 2 cut(s) 465, 573
MspA1I CMGCKG 2 cut(s) 7, 30
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 3 cut(s) 256, 297, 465
MvaI CCWGG 3 cut(s) 256, 297, 465
MwoI GCNNNNNNNGC 5 cut(s) 10, 308, 317, 578, 584
NdeI CATATG 1 cut(s) 589
NdeII GATC 2 cut(s) 172, 415
NlaIII CATG 4 cut(s) 254, 293, 572, 631
NspI RCATGY 1 cut(s) 572
PasI CCCWGGG 1 cut(s) 296
PfeI GAWTC 1 cut(s) 664
PflFI GACNNNGTC 1 cut(s) 509
PflMI CCANNNNNTGG 3 cut(s) 120, 261, 436
PkrI GCNGC 8 cut(s) 6, 9, 12, 179, 202, 322, 340, 580
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 3 cut(s) 254, 295, 463
PspGI CCWGG 3 cut(s) 254, 295, 463
PsyI GACNNNGTC 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 30
RseI CAYNNNNRTG 2 cut(s) 465, 573
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 107, 194
SatI GCNGC 8 cut(s) 5, 8, 11, 178, 201, 321, 339, 579
Sau3AI GATC 2 cut(s) 172, 415
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 3 cut(s) 256, 297, 465
SduI GDGCHC 2 cut(s) 168, 472
SfaNI GCATC 5 cut(s) 66, 343, 349, 469, 563
SfcI CTRYAG 2 cut(s) 312, 582
SmiMI CAYNNNNRTG 2 cut(s) 465, 573
Sse9I AATT 1 cut(s) 211
SsiI CCGC 4 cut(s) 7, 178, 338, 531
SspMI CTAG 1 cut(s) 227
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 3 cut(s) 254, 295, 463
TaaI ACNGT 1 cut(s) 509
TasI AATT 1 cut(s) 211
TauI GCSGC 3 cut(s) 10, 180, 341
TfiI GAWTC 1 cut(s) 664
Tru1I TTAA 2 cut(s) 107, 194
Tru9I TTAA 2 cut(s) 107, 194
TseI GCWGC 5 cut(s) 4, 10, 200, 320, 578
TspDTI ATGAA 2 cut(s) 384, 414
Tth111I GACNNNGTC 1 cut(s) 509
Van91I CCANNNNNTGG 3 cut(s) 120, 261, 436
XbaI TCTAGA 1 cut(s) 226
XceI RCATGY 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.