Rmu_sc0006835.1_g000002

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006835.1
OG0007196
Physical Location & Seq
Forward (+)
3376 .. 6312
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006835.1_g000002.1.cds

Sequence Viewer

Length: 861 bp
atgcagcggcagctcttgaacaagctcagctggagagccgtcaatggatttgctcagttcactcaaaggagagcgatgcacgataggaacaagaaggcaatggagttaatagccaaagggtggagcgctctgaaggaagttgatagagtcatcgattactgcgagctcaatgatcgccgcctcattcctttattaagggcagcaaaagataattttgagttggctctagagactgacaactcaaatacccatgccaggtattggttgtccagattgcatttgaaataccatgtcccaggggcgtgcaaagctataggagctgctttgttagttgaagcggcaaatatgggtgatgcagacgcacaatatgaacttgcttgtcgtcttagagttgagaatgaatatgtccaatcggaccaacaagctttccattatctggagaaggcagttgaccagttgcaccctggtgctctttaccttctgggtgctgtgtatctgaccggagactgtgtccagaaagatgttgcatccgccttatggtgtttccatagggcatcagagaagggacatgctggtgccgctatagcatatgggtctcttcttcttcaaggtgttgaagtcccagaatctgtgatgaacttgacttcaaaaaggggttctttagccagaaaggcaagaaagaatgcagaaagccttgtaagagaccaggcaggaatggcaagagagcggtttcagatcgctgcaaaagcaggatgtgatcttggactgaaatggttggaaagacttgacgaggaagagaagcatctattgactgaaaatgaaatggtagaaaatgcccaaggaggaaagaaggtgtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

286

Amino Acids

32.12

Weight (kDa)

8.4

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 575
AccB7I CCANNNNNTGG 3 cut(s) 120, 261, 436
AccBSI CCGCTC 1 cut(s) 727
AciI CCGC 6 cut(s) 7, 178, 338, 531, 579, 727
AcuI CTGAAG 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 127
AfiI CCNNNNNNNGG 5 cut(s) 120, 255, 261, 436, 537
AgsI TTSAA 6 cut(s) 19, 283, 335, 608, 617, 648
AjnI CCWGG 4 cut(s) 254, 295, 463, 705
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 7 cut(s) 13, 25, 30, 166, 311, 320, 425
AluI AGCT 7 cut(s) 13, 25, 30, 166, 311, 320, 425
Alw21I GWGCWC 2 cut(s) 168, 472
Alw26I GTCTC 4 cut(s) 224, 498, 600, 696
AlwNI CAGNNNCTG 1 cut(s) 629
Aor51HI AGCGCT 1 cut(s) 127
ApeKI GCWGC 5 cut(s) 4, 10, 200, 320, 740
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 415
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 168, 472
BbvI GCAGC 5 cut(s) 16, 22, 212, 307, 727
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 4 cut(s) 256, 297, 465, 707
BcoDI GTCTC 4 cut(s) 224, 498, 600, 696
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 2 cut(s) 312, 582
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 671
BisI GCNGC 9 cut(s) 5, 8, 11, 178, 201, 321, 339, 579, 741
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 9 cut(s) 6, 9, 12, 179, 202, 322, 340, 580, 742
Bme1390I CCNGG 4 cut(s) 256, 297, 465, 707
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 4 cut(s) 256, 297, 465, 707
BmsI GCATC 5 cut(s) 66, 343, 536, 563, 811
BpmI CTGGAG 2 cut(s) 52, 458
Bpu1102I GCTNAGC 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 153
BsaI GGTCTC 2 cut(s) 600, 696
BsaJI CCNNGG 4 cut(s) 295, 296, 463, 838
BsaWI WCCGGW 1 cut(s) 500
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 255, 261, 436, 537
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 4 cut(s) 256, 297, 465, 707
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 4 cut(s) 295, 296, 463, 838
BseGI GGATG 2 cut(s) 527, 758
BseLI CCNNNNNNNGG 5 cut(s) 120, 255, 261, 436, 537
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 40, 68
BseNI ACTGG 1 cut(s) 454
BseXI GCAGC 5 cut(s) 16, 22, 212, 307, 727
BshNI GGYRCC 1 cut(s) 575
BshVI ATCGAT 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 168, 472
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 3 cut(s) 278, 579, 605
BslI CCNNNNNNNGG 5 cut(s) 120, 255, 261, 436, 537
BsmAI GTCTC 4 cut(s) 224, 498, 600, 696
BsmFI GGGAC 3 cut(s) 278, 579, 605
BsmI GAATGC 1 cut(s) 688
Bso31I GGTCTC 2 cut(s) 600, 696
Bsp1286I GDGCHC 2 cut(s) 168, 472
Bsp143I GATC 3 cut(s) 172, 735, 757
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 6 cut(s) 7, 178, 338, 531, 579, 727
BspCNI CTCAG 2 cut(s) 39, 67
BspDI ATCGAT 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 575
BspTNI GGTCTC 2 cut(s) 600, 696
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 4 cut(s) 295, 296, 463, 838
BssMI GATC 3 cut(s) 172, 735, 757
BssT1I CCWWGG 1 cut(s) 838
Bst2UI CCWGG 4 cut(s) 256, 297, 465, 707
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 2 cut(s) 603, 789
BstC8I GCNNGC 2 cut(s) 164, 304
BstDEI CTNAG 3 cut(s) 26, 54, 386
BstF5I GGATG 2 cut(s) 527, 758
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 3 cut(s) 175, 738, 760
BstMAI GTCTC 4 cut(s) 224, 498, 600, 696
BstMBI GATC 3 cut(s) 172, 735, 757
BstMWI GCNNNNNNNGC 8 cut(s) 10, 308, 317, 578, 584, 671, 716, 746
BstNI CCWGG 4 cut(s) 256, 297, 465, 707
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 4 cut(s) 254, 295, 463, 705
BstSFI CTRYAG 2 cut(s) 312, 582
BstV1I GCAGC 5 cut(s) 16, 22, 212, 307, 727
Bsu15I ATCGAT 1 cut(s) 153
BsuTUI ATCGAT 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 2 cut(s) 527, 758
Cac8I GCNNGC 2 cut(s) 164, 304
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 415
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 1 cut(s) 368
CviAII CATG 3 cut(s) 251, 290, 569
DdeI CTNAG 3 cut(s) 26, 54, 386
DpnI GATC 3 cut(s) 174, 737, 759
DpnII GATC 3 cut(s) 172, 735, 757
Eam1104I CTCTTC 2 cut(s) 603, 789
EarI CTCTTC 2 cut(s) 603, 789
EciI GGCGGA 1 cut(s) 520
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 838
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 2 cut(s) 600, 696
Eco47I GGWCC 1 cut(s) 415
Eco47III AGCGCT 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 4 cut(s) 254, 295, 463, 705
EcoT14I CCWWGG 1 cut(s) 838
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 838
FaeI CATG 3 cut(s) 254, 293, 572
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FaqI GGGAC 3 cut(s) 278, 579, 605
FatI CATG 3 cut(s) 250, 289, 568
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 9 cut(s) 5, 8, 11, 178, 201, 321, 339, 579, 741
FokI GGATG 2 cut(s) 514, 765
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 9 cut(s) 5, 8, 11, 178, 201, 321, 339, 579, 741
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 127
GluI GCNGC 9 cut(s) 5, 8, 11, 178, 201, 321, 339, 579, 741
GsuI CTGGAG 2 cut(s) 52, 458
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 1 cut(s) 501
HgaI GACGC 1 cut(s) 368
HhaI GCGC 1 cut(s) 128
Hin1II CATG 3 cut(s) 254, 293, 572
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 2 cut(s) 147, 626
HpaII CCGG 1 cut(s) 501
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 60, 451
Hpy188I TCNGA 5 cut(s) 132, 415, 498, 559, 735
Hpy188III TCNNGA 5 cut(s) 16, 227, 270, 437, 514
Hpy8I GTNNAC 2 cut(s) 60, 451
HpyAV CCTTC 6 cut(s) 88, 127, 436, 488, 556, 844
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4V TGCA 9 cut(s) 4, 79, 277, 306, 356, 460, 527, 686, 743
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 308, 317, 578, 584, 671, 716, 746
HpyF3I CTNAG 3 cut(s) 26, 54, 386
Hsp92II CATG 3 cut(s) 254, 293, 572
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 3 cut(s) 172, 735, 757
LmnI GCTCC 2 cut(s) 123, 317
Lsp1109I GCAGC 5 cut(s) 16, 22, 212, 307, 727
LweI GCATC 5 cut(s) 66, 343, 536, 563, 811
MaeI CTAG 1 cut(s) 227
MalI GATC 3 cut(s) 174, 737, 759
MbiI CCGCTC 1 cut(s) 727
MboI GATC 3 cut(s) 172, 735, 757
MboII GAAGA 4 cut(s) 590, 593, 596, 806
MhlI GDGCHC 2 cut(s) 168, 472
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 756
MnlI CCTC 3 cut(s) 191, 784, 836
MseI TTAA 3 cut(s) 107, 194, 859
MslI CAYNNNNRTG 2 cut(s) 465, 573
MspA1I CMGCKG 2 cut(s) 7, 30
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 4 cut(s) 256, 297, 465, 707
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 4 cut(s) 256, 297, 465, 707
MwoI GCNNNNNNNGC 8 cut(s) 10, 308, 317, 578, 584, 671, 716, 746
NdeI CATATG 1 cut(s) 589
NdeII GATC 3 cut(s) 172, 735, 757
NlaIII CATG 3 cut(s) 254, 293, 572
NlaIV GGNNCC 1 cut(s) 577
NspI RCATGY 1 cut(s) 572
OliI CACNNNNGTG 1 cut(s) 465
PasI CCCWGGG 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 688
PfeI GAWTC 1 cut(s) 626
PflFI GACNNNGTC 1 cut(s) 509
PflMI CCANNNNNTGG 3 cut(s) 120, 261, 436
PkrI GCNGC 9 cut(s) 6, 9, 12, 179, 202, 322, 340, 580, 742
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 4 cut(s) 254, 295, 463, 705
PspGI CCWGG 4 cut(s) 254, 295, 463, 705
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 629
PsyI GACNNNGTC 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 30
RseI CAYNNNNRTG 2 cut(s) 465, 573
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 3 cut(s) 107, 194, 859
SatI GCNGC 9 cut(s) 5, 8, 11, 178, 201, 321, 339, 579, 741
Sau3AI GATC 3 cut(s) 172, 735, 757
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 4 cut(s) 256, 297, 465, 707
SduI GDGCHC 2 cut(s) 168, 472
SfaNI GCATC 5 cut(s) 66, 343, 536, 563, 811
SfcI CTRYAG 2 cut(s) 312, 582
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 2 cut(s) 465, 573
Sse9I AATT 1 cut(s) 211
SsiI CCGC 6 cut(s) 7, 178, 338, 531, 579, 727
SspMI CTAG 1 cut(s) 227
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 4 cut(s) 254, 295, 463, 705
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 1 cut(s) 509
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 211
TauI GCSGC 4 cut(s) 10, 180, 341, 581
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 3 cut(s) 107, 194, 859
Tru9I TTAA 3 cut(s) 107, 194, 859
TseI GCWGC 5 cut(s) 4, 10, 200, 320, 740
TspDTI ATGAA 4 cut(s) 384, 414, 650, 834
Tth111I GACNNNGTC 1 cut(s) 509
Van91I CCANNNNNTGG 3 cut(s) 120, 261, 436
VpaK11BI GGWCC 1 cut(s) 415
XbaI TCTAGA 1 cut(s) 226
XceI RCATGY 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.