Rw5G035020

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007196
Physical Location & Seq
Forward (+)
60500173 .. 60502206
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035020.1

Sequence Viewer

Length: 369 bp
ATGGGATGTAAGACGCTGTCTATAGTTAGAGGACAATTTCATGTGGACTCAAGCTTTTTGAATGAATATGTCCTGTCAGATCAACAAGCTTTCCATTATCTGGGGAAGGCAGTTGACCAGTTGCATCTAGGTGCTCTTTACCTTCTGGGTGCTGTGTATCTGACCGGAGACTGTGGACGTGTGGGTGCAGCTATAGCAGAAGGGTCTCTTCTTCTTCAAGGTCTGTTCTTCCCTTCCATGCTTCTTTTATGTTATTGCAGAACAATCGCTGCAAACGTAAGATGTGATCTTGGACTGAACTGGTTGGAAAGACTTGACAAGGAAGAGAAGCATATATTAATCAGAAATGAAATGGTAGAACATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

122

Amino Acids

13.6

Weight (kDa)

5.89

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 2 cut(s) 61, 218
AjiI CACGTC 1 cut(s) 179
AluBI AGCT 3 cut(s) 54, 89, 191
AluI AGCT 3 cut(s) 54, 89, 191
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 162, 210
ApeKI GCWGC 2 cut(s) 188, 269
AseI ATTAAT 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 200, 256
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BcoDI GTCTC 2 cut(s) 162, 210
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 2 cut(s) 21, 192
BisI GCNGC 2 cut(s) 189, 270
BlsI GCNGC 2 cut(s) 190, 271
BmgBI CACGTC 1 cut(s) 179
BmsI GCATC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 118, 305
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 100
BseNI ACTGG 2 cut(s) 118, 305
BseXI GCAGC 2 cut(s) 200, 256
BsgI GTGCAG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 2 cut(s) 162, 210
Bso31I GGTCTC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 79, 286
BspTNI GGTCTC 1 cut(s) 210
BsrI ACTGG 2 cut(s) 118, 305
BssMI GATC 2 cut(s) 79, 286
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 2 cut(s) 213, 318
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 2 cut(s) 82, 289
BstMAI GTCTC 2 cut(s) 162, 210
BstMBI GATC 2 cut(s) 79, 286
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 365
BstSFI CTRYAG 2 cut(s) 21, 192
BstV1I GCAGC 2 cut(s) 200, 256
BtrI CACGTC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 11
CseI GACGC 1 cut(s) 22
CviAII CATG 3 cut(s) 41, 238, 362
CviJI RGCY 3 cut(s) 54, 89, 191
CviKI_1 RGCY 3 cut(s) 54, 89, 191
DpnI GATC 2 cut(s) 81, 288
DpnII GATC 2 cut(s) 79, 286
Eam1104I CTCTTC 2 cut(s) 213, 318
EarI CTCTTC 2 cut(s) 213, 318
Eco31I GGTCTC 1 cut(s) 210
FaeI CATG 3 cut(s) 44, 241, 365
FaiI YATR 9 cut(s) 23, 42, 69, 194, 239, 250, 333, 335, 363
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 3 cut(s) 40, 237, 361
Fnu4HI GCNGC 2 cut(s) 189, 270
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 189, 270
FspBI CTAG 1 cut(s) 128
GluI GCNGC 2 cut(s) 189, 270
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 22
Hin1II CATG 3 cut(s) 44, 241, 365
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 2 cut(s) 52, 87
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 165
Hpy166II GTNNAC 3 cut(s) 46, 115, 176
Hpy188I TCNGA 3 cut(s) 79, 162, 344
Hpy8I GTNNAC 3 cut(s) 46, 115, 176
HpyAV CCTTC 4 cut(s) 100, 152, 194, 243
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 2 cut(s) 178, 276
HpyCH4V TGCA 4 cut(s) 124, 188, 258, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpySE526I ACGT 2 cut(s) 178, 276
Hsp92II CATG 3 cut(s) 44, 241, 365
Kzo9I GATC 2 cut(s) 79, 286
LpnPI CCDG 6 cut(s) 86, 86, 131, 131, 178, 286
Lsp1109I GCAGC 2 cut(s) 200, 256
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 128
MaeII ACGT 2 cut(s) 178, 276
MalI GATC 2 cut(s) 81, 288
MboI GATC 2 cut(s) 79, 286
MboII GAAGA 5 cut(s) 200, 203, 206, 220, 335
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 1 cut(s) 23
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 2 cut(s) 79, 286
NlaIII CATG 3 cut(s) 44, 241, 365
NspI RCATGY 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PflFI GACNNNGTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 2 cut(s) 190, 271
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PshBI ATTAAT 1 cut(s) 338
PsyI GACNNNGTC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 2 cut(s) 189, 270
Sau3AI GATC 2 cut(s) 79, 286
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 1 cut(s) 136
SetI ASST 8 cut(s) 56, 91, 133, 144, 181, 193, 223, 279
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 2 cut(s) 21, 192
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 35
SspMI CTAG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 2 cut(s) 181, 279
TasI AATT 1 cut(s) 35
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TseI GCWGC 2 cut(s) 188, 269
TspDTI ATGAA 3 cut(s) 29, 78, 363
Tth111I GACNNNGTC 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 100
VspI ATTAAT 1 cut(s) 338
XceI RCATGY 1 cut(s) 365
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.