Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007196

Physical Location & Seq

Genomic Coordinates Reverse (-)

2998034 .. 3000958

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015983

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCAGCGGCAGCTCTTGAACAAGCTCAGCTGGAGAGCCATCAATGGATTTGCTCAGTTCACTCAAAGGAGAGCGATGCACGATAGGAACAAGAAGGCAATGGAGTTAATAGCCAAAGGGTGGAGCGCTTTGAAGGAAGTTGATAGAGTCATCGATTACTGCGAGCTCAATGATCGCCGCCTCATTCCTTTATTAAGGGCAGCAAAAGATAATTTTGAGTTGGCTCTAGAGACTGACAACTCAAATACCCATGCCAGGTATTGGTTGTCCAGATTGCATTTGAAATACCATGTCCCAGGGGCATGCAAAGCTATAGGAGCTGCTTTGTTAGTTGAAGCGGCAAATATGGGTGATGCAGATGCACAATATGAACTTGCTTGTCGTCTTAGAGTTGAGAATGAATATGTCCAATCGGATCAACAAGCTTTCCATTATCTGGAGAAGGCAGTTGACCAGTTGCATCCTGGTGCTCTTTACCTTCTGGGTGCTGTGTATCTGACCGGAGACTGTGTCAAGAAAGATGTTGCCTCCGCCTTATGGTGTTTCCATAGGGCATCACAGAAGGGACATGCTGGTGCAGCTATAGCATATGGGTCTCTTCTTCTTCAAGGTGTTGAAGTCCCAGAATCTGTGATGATGAACTTGACTTCAAAAAGGGGTTCTTTAGCCAGAAAGGCAAGAAAGAATGCGGAAAGCCTTGTAAGAGACCAGGCAGGAATGGCAAGAGAGCGGTTTCAGATCGCTGCAAAAGCAGGATGTGATCTTGGACTGAAATGGTTGGAAAGACTTGACGAGGAAGAGAAGCATCTATTGACCGAAAATGAAATGGTAGAAAATGCCCAAGGAGGAAAGAAGGTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sel1

Protein Analysis

288

Amino Acids

32.27

Weight (kDa)

8.74

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25570 AT2G25570 AT2G25570
fragaria_vesca	FvH4_5g12980 FvH4_5g12980
malus_domestica	MD02G1034400.v1.1 MD15G1175100.v1.1
prunus_persica	Prupe.6G277700_v2.0.a1
pyrus_communis	pycom02g02810 pycom15g15660
rosa_chinensis	RchiOBHm_Chr2g0088741 RchiOBHm_Chr2g0088971 RchiOBHm_Chr2g0089021
rosa_laevigata	RLG00000015983
rosa_multiflora	Rmu_co8507067.1_g000001 Rmu_sc0006835.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152340
rosa_rugosa	Rorug01G0486600
rosa_samantha	Rh2AG042100 Rh2BG040600 Rh2CG041500 Rh2CG042100 Rh2DG041100
rosa_wichuraiana	Rw2G003540 Rw5G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	120, 261, 436
AccBSI	CCGCTC	1 cut(s)	730
AciI	CCGC	6 cut(s)	7, 178, 338, 531, 689, 730
AclWI	GGATC	1 cut(s)	423
AfeI	AGCGCT	1 cut(s)	127
AfiI	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
AgsI	TTSAA	7 cut(s)	19, 133, 283, 335, 608, 617, 651
AjnI	CCWGG	4 cut(s)	254, 295, 463, 708
AluBI	AGCT	8 cut(s)	13, 25, 30, 166, 311, 320, 425, 581
AluI	AGCT	8 cut(s)	13, 25, 30, 166, 311, 320, 425, 581
Alw21I	GWGCWC	2 cut(s)	168, 472
Alw26I	GTCTC	4 cut(s)	224, 498, 600, 699
AlwI	GGATC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	629
Aor51HI	AGCGCT	1 cut(s)	127
ApeKI	GCWGC	6 cut(s)	4, 10, 200, 320, 578, 743
AspLEI	GCGC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	168, 472
BbvI	GCAGC	6 cut(s)	16, 22, 212, 307, 590, 730
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	4 cut(s)	256, 297, 465, 710
BcoDI	GTCTC	4 cut(s)	224, 498, 600, 699
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	312, 582
BfoI	RGCGCY	1 cut(s)	129
BglI	GCCNNNNNGGC	1 cut(s)	674
BisI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 744
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	9 cut(s)	6, 9, 12, 179, 202, 322, 340, 580, 745
Bme1390I	CCNGG	4 cut(s)	256, 297, 465, 710
BmrFI	CCNGG	4 cut(s)	256, 297, 465, 710
BmsI	GCATC	6 cut(s)	66, 343, 349, 469, 563, 814
BpmI	CTGGAG	2 cut(s)	52, 458
Bpu1102I	GCTNAGC	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	153
BsaI	GGTCTC	2 cut(s)	600, 699
BsaJI	CCNNGG	3 cut(s)	295, 296, 841
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	4 cut(s)	256, 297, 465, 710
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	3 cut(s)	295, 296, 841
BseGI	GGATG	2 cut(s)	460, 761
BseLI	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	40, 68
BseNI	ACTGG	1 cut(s)	454
BseXI	GCAGC	6 cut(s)	16, 22, 212, 307, 590, 730
BsgI	GTGCAG	1 cut(s)	597
BshVI	ATCGAT	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	168, 472
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	3 cut(s)	278, 579, 605
BslI	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
BsmAI	GTCTC	4 cut(s)	224, 498, 600, 699
BsmFI	GGGAC	3 cut(s)	278, 579, 605
BsmI	GAATGC	1 cut(s)	691
Bso31I	GGTCTC	2 cut(s)	600, 699
Bsp1286I	GDGCHC	2 cut(s)	168, 472
Bsp143I	GATC	4 cut(s)	172, 415, 738, 760
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	6 cut(s)	7, 178, 338, 531, 689, 730
BspCNI	CTCAG	2 cut(s)	39, 67
BspDI	ATCGAT	1 cut(s)	153
BspPI	GGATC	1 cut(s)	423
BspTNI	GGTCTC	2 cut(s)	600, 699
BsrBI	CCGCTC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	295, 296, 841
BssMI	GATC	4 cut(s)	172, 415, 738, 760
BssT1I	CCWWGG	1 cut(s)	841
Bst2UI	CCWGG	4 cut(s)	256, 297, 465, 710
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	603, 792
BstC8I	GCNNGC	2 cut(s)	164, 304
BstDEI	CTNAG	3 cut(s)	26, 54, 386
BstF5I	GGATG	2 cut(s)	460, 761
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	4 cut(s)	175, 418, 741, 763
BstMAI	GTCTC	4 cut(s)	224, 498, 600, 699
BstMBI	GATC	4 cut(s)	172, 415, 738, 760
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 308, 317, 578, 584, 674, 719, 749
BstNI	CCWGG	4 cut(s)	256, 297, 465, 710
BstNSI	RCATGY	2 cut(s)	306, 572
BstSCI	CCNGG	4 cut(s)	254, 295, 463, 708
BstSFI	CTRYAG	2 cut(s)	312, 582
BstV1I	GCAGC	6 cut(s)	16, 22, 212, 307, 590, 730
Bsu15I	ATCGAT	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	460, 761
Cac8I	GCNNGC	2 cut(s)	164, 304
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	153
CviAII	CATG	4 cut(s)	251, 290, 303, 569
DdeI	CTNAG	3 cut(s)	26, 54, 386
DpnI	GATC	4 cut(s)	174, 417, 740, 762
DpnII	GATC	4 cut(s)	172, 415, 738, 760
Eam1104I	CTCTTC	2 cut(s)	603, 792
EarI	CTCTTC	2 cut(s)	603, 792
EciI	GGCGGA	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	841
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	2 cut(s)	600, 699
Eco47III	AGCGCT	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	4 cut(s)	254, 295, 463, 708
EcoT14I	CCWWGG	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	841
FaeI	CATG	4 cut(s)	254, 293, 306, 572
FalI	AAGNNNNNCTT	2 cut(s)	646, 678
FaqI	GGGAC	3 cut(s)	278, 579, 605
FatI	CATG	4 cut(s)	250, 289, 302, 568
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 744
FokI	GGATG	2 cut(s)	447, 768
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 744
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 744
GsuI	CTGGAG	2 cut(s)	52, 458
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	254, 293, 306, 572
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	2 cut(s)	147, 626
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	60, 451
Hpy188I	TCNGA	3 cut(s)	415, 498, 738
Hpy188III	TCNNGA	5 cut(s)	16, 227, 270, 437, 514
Hpy8I	GTNNAC	2 cut(s)	60, 451
HpyAV	CCTTC	6 cut(s)	88, 127, 436, 488, 556, 847
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	9 cut(s)	4, 79, 277, 306, 356, 362, 460, 578, 746
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 308, 317, 578, 584, 674, 719, 749
HpyF3I	CTNAG	3 cut(s)	26, 54, 386
Hsp92II	CATG	4 cut(s)	254, 293, 306, 572
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	172, 415, 738, 760
LmnI	GCTCC	2 cut(s)	123, 317
Lsp1109I	GCAGC	6 cut(s)	16, 22, 212, 307, 590, 730
LweI	GCATC	6 cut(s)	66, 343, 349, 469, 563, 814
MaeI	CTAG	1 cut(s)	227
MalI	GATC	4 cut(s)	174, 417, 740, 762
MbiI	CCGCTC	1 cut(s)	730
MboI	GATC	4 cut(s)	172, 415, 738, 760
MboII	GAAGA	4 cut(s)	590, 593, 596, 809
MhlI	GDGCHC	2 cut(s)	168, 472
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	759
MnlI	CCTC	4 cut(s)	191, 538, 787, 839
MseI	TTAA	3 cut(s)	107, 194, 862
MslI	CAYNNNNRTG	2 cut(s)	465, 573
MspA1I	CMGCKG	2 cut(s)	7, 30
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	4 cut(s)	256, 297, 465, 710
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	4 cut(s)	256, 297, 465, 710
MwoI	GCNNNNNNNGC	8 cut(s)	10, 308, 317, 578, 584, 674, 719, 749
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	4 cut(s)	172, 415, 738, 760
NlaIII	CATG	4 cut(s)	254, 293, 306, 572
NspI	RCATGY	2 cut(s)	306, 572
PaeI	GCATGC	1 cut(s)	306
PasI	CCCWGGG	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	626
PflFI	GACNNNGTC	1 cut(s)	509
PflMI	CCANNNNNTGG	3 cut(s)	120, 261, 436
PkrI	GCNGC	9 cut(s)	6, 9, 12, 179, 202, 322, 340, 580, 745
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	4 cut(s)	254, 295, 463, 708
PspGI	CCWGG	4 cut(s)	254, 295, 463, 708
PstNI	CAGNNNCTG	1 cut(s)	629
PsyI	GACNNNGTC	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	465, 573
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	107, 194, 862
SatI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 744
Sau3AI	GATC	4 cut(s)	172, 415, 738, 760
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	4 cut(s)	256, 297, 465, 710
SduI	GDGCHC	2 cut(s)	168, 472
SfaNI	GCATC	6 cut(s)	66, 343, 349, 469, 563, 814
SfcI	CTRYAG	2 cut(s)	312, 582
SmiMI	CAYNNNNRTG	2 cut(s)	465, 573
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	6 cut(s)	7, 178, 338, 531, 689, 730
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	4 cut(s)	254, 295, 463, 708
StyI	CCWWGG	1 cut(s)	841
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	1 cut(s)	153
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	1 cut(s)	211
TauI	GCSGC	3 cut(s)	10, 180, 341
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	3 cut(s)	107, 194, 862
Tru9I	TTAA	3 cut(s)	107, 194, 862
TseI	GCWGC	6 cut(s)	4, 10, 200, 320, 578, 743
TspDTI	ATGAA	4 cut(s)	384, 414, 653, 837
Tth111I	GACNNNGTC	1 cut(s)	509
Van91I	CCANNNNNTGG	3 cut(s)	120, 261, 436
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	2 cut(s)	306, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.