MD15G1175100.v1.1

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0007196
Physical Location & Seq
Reverse (-)
13615937 .. 13618693
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1175100.v1.1.491

Sequence Viewer

Length: 822 bp
ATGCAGAGGCAGCTGCTGAAGAAGCTCAGACTGAAACCTCCCAATGGACTCACCCAATTCAACCAACGAAGAGAGATGCACAGCAGGAACAAGAAGGCGATGGAGTTGATAGCCAAAGGCTGGAGTGCCCTCAAGGAAGTCGACCGAGTCATCGATTACTGCGAGCTCAACGATCGCCGCCTCATCCCTCTCTTACGGGCAGCAAGGGAGAATTTTGAGTTGGCTCTGGAGGCTGACAATTCAAATACCCATGCCAGGTATTGGTTGTCCAAATTGCAATTGAAATACCATGTCCCGGGAGCCTGCAAAGCTATCGGAGCTGCCTTGTTAGTTGAAGCAGCGGATATGGGTGATCCGGATGCACAGTACGAACTGGGTTGTCGTCTTAGAGTTGATAATGAATACGTCCAGTCAGATCAGCAAGCTTTCCATTATATAGAGAAGGCTGTTGACCGGTTGCATCCAGGTGCTCTTTACCTTCTGGGTTCCGTGTATCTGACGGGAGACTGCGTGAAAAAAGATATGGCTTCCGCATTATGGTGTTTCTATAGGGCATCAGATAAGGGACATGCTGCTGCAGCTATAGCATTTGGATCTCTTCTTCTAAGAGGTGCTGAAATCCCAGAATCTGTGACGAAGTTTGCTTCAAAGAGGGGTCCTTTGGCCAGAAAGGAAAGCATAACAGATCCCATAGAGATGGCAAGGGAACGATTCCAGATTGCTGCGAAAGCCGGGTGTGACCTAGGACTGAAATGGTTGGAAAGACTTGAGGAGGAAGAGAAGCATCTATTAACTGGATCTGAAATGGCCGAACAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

274

Amino Acids

30.86

Weight (kDa)

8.44

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 157 - 190 7.1e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 120, 261
AccI GTMKAC 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 3 cut(s) 178, 341, 531
AclWI GGATC 4 cut(s) 347, 601, 680, 805
AcoI YGGCCR 2 cut(s) 663, 807
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 6 cut(s) 44, 120, 255, 261, 295, 537
AgeI ACCGGT 1 cut(s) 453
AgsI TTSAA 5 cut(s) 61, 243, 283, 335, 648
AjnI CCWGG 2 cut(s) 254, 463
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 7 cut(s) 13, 25, 166, 311, 320, 425, 581
AluI AGCT 7 cut(s) 13, 25, 166, 311, 320, 425, 581
Alw21I GWGCWC 2 cut(s) 168, 472
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 4 cut(s) 347, 601, 680, 805
AlwNI CAGNNNCTG 2 cut(s) 16, 629
Ama87I CYCGRG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 2 cut(s) 663, 807
ApeKI GCWGC 9 cut(s) 10, 13, 200, 320, 338, 572, 575, 578, 722
ApoI RAATTY 1 cut(s) 211
AsiGI ACCGGT 1 cut(s) 453
AspA2I CCTAGG 1 cut(s) 742
AspS9I GGNCC 1 cut(s) 656
AsuC2I CCSGG 3 cut(s) 296, 297, 733
AsuHPI GGTGA 2 cut(s) 43, 362
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 1 cut(s) 656
AvrII CCTAGG 1 cut(s) 742
BaeGI GKGCMC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 665
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 168, 472
BbvI GCAGC 8 cut(s) 22, 212, 307, 350, 559, 562, 590, 709
BccI CCATC 2 cut(s) 94, 691
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 2 cut(s) 256, 465
BcnI CCSGG 3 cut(s) 296, 297, 733
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 3 cut(s) 547, 576, 582
BlnI CCTAGG 1 cut(s) 742
Bme1390I CCNGG 5 cut(s) 256, 296, 297, 465, 733
Bme18I GGWCC 1 cut(s) 656
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 3 cut(s) 301, 487, 657
BmrFI CCNGG 5 cut(s) 256, 296, 297, 465, 733
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 5 cut(s) 66, 349, 469, 563, 793
BmuI ACTGGG 1 cut(s) 383
BpmI CTGGAG 2 cut(s) 142, 248
BpuEI CTTGAG 2 cut(s) 116, 788
BpuMI CCSGG 3 cut(s) 296, 297, 733
Bsa29I ATCGAT 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 295, 742
BsaWI WCCGGW 2 cut(s) 355, 453
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 120, 255, 261, 295, 537
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 3 cut(s) 378, 409, 799
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 2 cut(s) 256, 465
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 295, 742
BseGI GGATG 3 cut(s) 183, 364, 460
BseLI CCNNNNNNNGG 6 cut(s) 44, 120, 255, 261, 295, 537
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 3 cut(s) 378, 409, 799
BseRI GAGGAG 1 cut(s) 785
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 8 cut(s) 22, 212, 307, 350, 559, 562, 590, 709
Bsh1285I CGRYCG 2 cut(s) 145, 175
BshFI GGCC 2 cut(s) 665, 809
BshTI ACCGGT 1 cut(s) 453
BshVI ATCGAT 1 cut(s) 153
BsiEI CGRYCG 2 cut(s) 145, 175
BsiHKAI GWGCWC 2 cut(s) 168, 472
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 4 cut(s) 296, 356, 454, 732
BslFI GGGAC 2 cut(s) 278, 579
BslI CCNNNNNNNGG 6 cut(s) 44, 120, 255, 261, 295, 537
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 2 cut(s) 278, 579
BsnI GGCC 2 cut(s) 665, 809
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 3 cut(s) 130, 168, 472
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 6 cut(s) 172, 352, 415, 593, 685, 797
BspACI CCGC 3 cut(s) 178, 341, 531
BspANI GGCC 2 cut(s) 665, 809
BspCNI CTCAG 1 cut(s) 39
BspDI ATCGAT 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 355
BspLI GGNNCC 3 cut(s) 301, 487, 657
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 4 cut(s) 347, 601, 680, 805
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 3 cut(s) 378, 409, 799
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 295, 742
BssMI GATC 6 cut(s) 172, 352, 415, 593, 685, 797
BssT1I CCWWGG 1 cut(s) 742
Bst2UI CCWGG 2 cut(s) 256, 465
Bst4CI ACNGT 1 cut(s) 366
Bst6I CTCTTC 3 cut(s) 64, 603, 771
BstC8I GCNNGC 3 cut(s) 164, 304, 423
BstDEI CTNAG 3 cut(s) 26, 386, 605
BstF5I GGATG 3 cut(s) 183, 364, 460
BstKTI GATC 6 cut(s) 175, 355, 418, 596, 688, 800
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 6 cut(s) 172, 352, 415, 593, 685, 797
BstMCI CGRYCG 2 cut(s) 145, 175
BstMWI GCNNNNNNNGC 8 cut(s) 10, 22, 230, 308, 317, 578, 584, 728
BstNI CCWGG 2 cut(s) 256, 465
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 5 cut(s) 254, 294, 295, 463, 731
BstSFI CTRYAG 3 cut(s) 547, 576, 582
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 8 cut(s) 22, 212, 307, 350, 559, 562, 590, 709
BstX2I RGATCY 3 cut(s) 593, 685, 797
BstXI CCANNNNNNTGG 1 cut(s) 697
BstYI RGATCY 3 cut(s) 593, 685, 797
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 2 cut(s) 665, 809
BsuTUI ATCGAT 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 3 cut(s) 183, 364, 460
Cac8I GCNNGC 3 cut(s) 164, 304, 423
CaiI CAGNNNCTG 2 cut(s) 16, 629
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 656
Cfr9I CCCGGG 1 cut(s) 295
ClaI ATCGAT 1 cut(s) 153
Csp6I GTAC 1 cut(s) 367
CspAI ACCGGT 1 cut(s) 453
CviAII CATG 3 cut(s) 251, 290, 569
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 3 cut(s) 26, 386, 605
DpnI GATC 6 cut(s) 174, 354, 417, 595, 687, 799
DpnII GATC 6 cut(s) 172, 352, 415, 593, 685, 797
EaeI YGGCCR 2 cut(s) 663, 807
Eam1104I CTCTTC 3 cut(s) 64, 603, 771
EarI CTCTTC 3 cut(s) 64, 603, 771
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 656
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 656
EcoRII CCWGG 2 cut(s) 254, 463
EcoT14I CCWWGG 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 3 cut(s) 254, 293, 572
FaqI GGGAC 2 cut(s) 278, 579
FatI CATG 3 cut(s) 250, 289, 568
FblI GTMKAC 1 cut(s) 141
FokI GGATG 3 cut(s) 170, 371, 447
FriOI GRGCYC 1 cut(s) 168
FspBI CTAG 1 cut(s) 743
GsuI CTGGAG 2 cut(s) 142, 248
HaeIII GGCC 2 cut(s) 665, 809
HapII CCGG 4 cut(s) 296, 356, 454, 732
Hin1II CATG 3 cut(s) 254, 293, 572
HincII GTYRAC 2 cut(s) 142, 451
HindII GTYRAC 2 cut(s) 142, 451
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 4 cut(s) 48, 147, 626, 711
HpaII CCGG 4 cut(s) 296, 356, 454, 732
HphI GGTGA 2 cut(s) 43, 362
Hpy166II GTNNAC 2 cut(s) 142, 451
Hpy188I TCNGA 6 cut(s) 29, 317, 415, 498, 559, 802
Hpy188III TCNNGA 3 cut(s) 227, 356, 715
Hpy8I GTNNAC 2 cut(s) 142, 451
HpyAV CCTTC 3 cut(s) 88, 436, 488
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 7 cut(s) 4, 79, 277, 306, 362, 460, 578
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 22, 230, 308, 317, 578, 584, 728
HpyF3I CTNAG 3 cut(s) 26, 386, 605
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 3 cut(s) 254, 293, 572
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 6 cut(s) 172, 352, 415, 593, 685, 797
LmnI GCTCC 2 cut(s) 299, 317
Lsp1109I GCAGC 8 cut(s) 22, 212, 307, 350, 559, 562, 590, 709
LweI GCATC 5 cut(s) 66, 349, 469, 563, 793
MaeI CTAG 1 cut(s) 743
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 631, 737
MalI GATC 6 cut(s) 174, 354, 417, 595, 687, 799
MboI GATC 6 cut(s) 172, 352, 415, 593, 685, 797
MboII GAAGA 5 cut(s) 31, 81, 590, 593, 788
MfeI CAATTG 1 cut(s) 278
MflI RGATCY 3 cut(s) 593, 685, 797
MhlI GDGCHC 3 cut(s) 130, 168, 472
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 5 cut(s) 56, 211, 238, 272, 278
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 2 cut(s) 42, 156
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 9 cut(s) 48, 140, 191, 198, 223, 602, 645, 763, 766
Mox20I TGGCCA 1 cut(s) 665
MroI TCCGGA 1 cut(s) 355
MscI TGGCCA 1 cut(s) 665
MseI TTAA 2 cut(s) 791, 820
MslI CAYNNNNRTG 3 cut(s) 465, 538, 695
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 2 cut(s) 13, 341
MspI CCGG 4 cut(s) 296, 356, 454, 732
MspR9I CCNGG 5 cut(s) 256, 296, 297, 465, 733
MunI CAATTG 1 cut(s) 278
MvaI CCWGG 2 cut(s) 256, 465
MwoI GCNNNNNNNGC 8 cut(s) 10, 22, 230, 308, 317, 578, 584, 728
NciI CCSGG 3 cut(s) 296, 297, 733
NdeII GATC 6 cut(s) 172, 352, 415, 593, 685, 797
NlaIII CATG 3 cut(s) 254, 293, 572
NlaIV GGNNCC 3 cut(s) 301, 487, 657
NmuCI GTSAC 2 cut(s) 631, 737
NspI RCATGY 1 cut(s) 572
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 2 cut(s) 626, 711
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 2 cut(s) 120, 261
PinAI ACCGGT 1 cut(s) 453
Ple19I CGATCG 1 cut(s) 175
PleI GAGTC 2 cut(s) 42, 155
PpsI GAGTC 2 cut(s) 42, 155
PpuMI RGGWCCY 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 656
Psp6I CCWGG 2 cut(s) 254, 463
PspGI CCWGG 2 cut(s) 254, 463
PspN4I GGNNCC 3 cut(s) 301, 487, 657
PspPI GGNCC 1 cut(s) 656
PspPPI RGGWCCY 1 cut(s) 656
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 2 cut(s) 16, 629
PsuI RGATCY 3 cut(s) 593, 685, 797
PsyI GACNNNGTC 1 cut(s) 146
PvuI CGATCG 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 13
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 3 cut(s) 465, 538, 695
SacI GAGCTC 1 cut(s) 168
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 791, 820
Sau3AI GATC 6 cut(s) 172, 352, 415, 593, 685, 797
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 2 cut(s) 42, 156
ScrFI CCNGG 5 cut(s) 256, 296, 297, 465, 733
SduI GDGCHC 3 cut(s) 130, 168, 472
SfaNI GCATC 5 cut(s) 66, 349, 469, 563, 793
SfcI CTRYAG 3 cut(s) 547, 576, 582
SinI GGWCC 1 cut(s) 656
SmaI CCCGGG 1 cut(s) 297
SmiMI CAYNNNNRTG 3 cut(s) 465, 538, 695
SmlI CTYRAG 2 cut(s) 131, 767
SmoI CTYRAG 2 cut(s) 131, 767
Sse9I AATT 5 cut(s) 56, 211, 238, 272, 278
SsiI CCGC 3 cut(s) 178, 341, 531
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 5 cut(s) 254, 294, 295, 463, 731
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 141, 153
TaqII GACCGA 1 cut(s) 159
TasI AATT 5 cut(s) 56, 211, 238, 272, 278
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 2 cut(s) 626, 711
Tru1I TTAA 2 cut(s) 791, 820
Tru9I TTAA 2 cut(s) 791, 820
TseFI GTSAC 2 cut(s) 631, 737
TseI GCWGC 9 cut(s) 10, 13, 200, 320, 338, 572, 575, 578, 722
Tsp45I GTSAC 2 cut(s) 631, 737
TspDTI ATGAA 1 cut(s) 414
TspGWI ACGGA 1 cut(s) 478
TspMI CCCGGG 1 cut(s) 295
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 2 cut(s) 120, 261
VpaK11BI GGWCC 1 cut(s) 656
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 572
XmaI CCCGGG 1 cut(s) 295
XmaJI CCTAGG 1 cut(s) 742
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.