Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007196

Physical Location & Seq

Genomic Coordinates Reverse (-)

3298424 .. 3302121

Gene Structure 3698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG042100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCAGCGGCAGCTCTTGAACAAGCTCAGCTGGAGAGCCGTCAATGGATTTGCTCAGTTCACTCAAAGGAGAGCAATGCACGATAGGAACAAGAAGGCGATGGAGTTAATAGCCAAAGGGTGGAGCGCTCTGAAGGAAGTTGATAGAGTCATTGATTACTGCGAGCTCAATGATCGCCGCCTCATTCCTTTATTAAGGGCAGCAAAAGATAATTTTGAGTTGGCTCTAGAGACTGACAACTCAAATACCCATGCCAGGTATTGGTTGTCCAGATTGCATTTGAAATACCATGTCCCAGGGGCGTGCAAAGCTATAGGAGCTGCTTTGTTAGTTGAAGCGGCAAATATGGGTGATGCAGATGCACAATACGAACTTGCTTGTCGTCTTAGAGTTGAGAATGAATATGTCCAATCGGATCAACAAGCTTTCCATTATCTGGAGAAGGCAGTTGACCAGTTGCACCCTGGTGCTCTTTACCTTCTGGGTGCTGTGTATCTGACCGGAGACTGTGTCCAGAAAGATGTTGCATCCGCCTTATGGTGTTTCCATAGGGCATCAGAGAAGGTAATAAAGCTCCTGTTACTGCATACCCAGTTTTGGACCATGTTGTCGTCGAGATTGATTACATTTGAACTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sel1

Protein Analysis

213

Amino Acids

24.49

Weight (kDa)

8.56

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25570 AT2G25570 AT2G25570
fragaria_vesca	FvH4_5g12980 FvH4_5g12980
malus_domestica	MD02G1034400.v1.1 MD15G1175100.v1.1
prunus_persica	Prupe.6G277700_v2.0.a1
pyrus_communis	pycom02g02810 pycom15g15660
rosa_chinensis	RchiOBHm_Chr2g0088741 RchiOBHm_Chr2g0088971 RchiOBHm_Chr2g0089021
rosa_laevigata	RLG00000015983
rosa_multiflora	Rmu_co8507067.1_g000001 Rmu_sc0006835.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152340
rosa_rugosa	Rorug01G0486600
rosa_samantha	Rh2AG042100 Rh2BG040600 Rh2CG041500 Rh2CG042100 Rh2DG041100
rosa_wichuraiana	Rw2G003540 Rw5G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	607
AccB7I	CCANNNNNTGG	3 cut(s)	120, 261, 436
AciI	CCGC	4 cut(s)	7, 178, 338, 531
AclWI	GGATC	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	127
AfiI	CCNNNNNNNGG	6 cut(s)	120, 255, 261, 436, 537, 597
AgsI	TTSAA	4 cut(s)	19, 283, 335, 632
AjnI	CCWGG	3 cut(s)	254, 295, 463
AleI	CACNNNNGTG	1 cut(s)	465
AluBI	AGCT	8 cut(s)	13, 25, 30, 166, 311, 320, 425, 574
AluI	AGCT	8 cut(s)	13, 25, 30, 166, 311, 320, 425, 574
Alw21I	GWGCWC	2 cut(s)	168, 472
Alw26I	GTCTC	2 cut(s)	224, 498
AlwI	GGATC	1 cut(s)	423
Aor51HI	AGCGCT	1 cut(s)	127
ApeKI	GCWGC	4 cut(s)	4, 10, 200, 320
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	600
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	168, 472
BbvI	GCAGC	4 cut(s)	16, 22, 212, 307
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	3 cut(s)	256, 297, 465
BcoDI	GTCTC	2 cut(s)	224, 498
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	7 cut(s)	5, 8, 11, 178, 201, 321, 339
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	7 cut(s)	6, 9, 12, 179, 202, 322, 340
Bme1390I	CCNGG	3 cut(s)	256, 297, 465
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	600
BmrFI	CCNGG	3 cut(s)	256, 297, 465
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	4 cut(s)	343, 349, 536, 563
BmuI	ACTGGG	1 cut(s)	586
BpmI	CTGGAG	2 cut(s)	52, 458
Bpu1102I	GCTNAGC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	295, 296, 463
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	6 cut(s)	120, 255, 261, 436, 537, 597
Bse1I	ACTGG	2 cut(s)	454, 592
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	3 cut(s)	256, 297, 465
BseDI	CCNNGG	3 cut(s)	295, 296, 463
BseGI	GGATG	1 cut(s)	527
BseLI	CCNNNNNNNGG	6 cut(s)	120, 255, 261, 436, 537, 597
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	40, 68
BseNI	ACTGG	2 cut(s)	454, 592
BseXI	GCAGC	4 cut(s)	16, 22, 212, 307
BsiHKAI	GWGCWC	2 cut(s)	168, 472
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	6 cut(s)	120, 255, 261, 436, 537, 597
BsmAI	GTCTC	2 cut(s)	224, 498
BsmFI	GGGAC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	168, 472
Bsp143I	GATC	2 cut(s)	172, 415
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	4 cut(s)	7, 178, 338, 531
BspCNI	CTCAG	2 cut(s)	39, 67
BspPI	GGATC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	454, 592
BssECI	CCNNGG	3 cut(s)	295, 296, 463
BssMI	GATC	2 cut(s)	172, 415
Bst2UI	CCWGG	3 cut(s)	256, 297, 465
Bst4CI	ACNGT	2 cut(s)	509, 636
BstC8I	GCNNGC	2 cut(s)	164, 304
BstDEI	CTNAG	3 cut(s)	26, 54, 386
BstF5I	GGATG	1 cut(s)	527
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	175, 418
BstMAI	GTCTC	2 cut(s)	224, 498
BstMBI	GATC	2 cut(s)	172, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 308, 317
BstNI	CCWGG	3 cut(s)	256, 297, 465
BstSCI	CCNGG	3 cut(s)	254, 295, 463
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	16, 22, 212, 307
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	527
Cac8I	GCNNGC	2 cut(s)	164, 304
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	600
CviAII	CATG	3 cut(s)	251, 290, 604
DdeI	CTNAG	3 cut(s)	26, 54, 386
DpnI	GATC	2 cut(s)	174, 417
DpnII	GATC	2 cut(s)	172, 415
DrdI	GACNNNNNNGTC	1 cut(s)	607
DseDI	GACNNNNNNGTC	1 cut(s)	607
EciI	GGCGGA	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	600
Eco47III	AGCGCT	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	3 cut(s)	254, 295, 463
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	3 cut(s)	254, 293, 607
FaiI	YATR	9 cut(s)	252, 291, 314, 347, 405, 538, 549, 588, 605
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	3 cut(s)	250, 289, 603
Fnu4HI	GCNGC	7 cut(s)	5, 8, 11, 178, 201, 321, 339
FokI	GGATG	1 cut(s)	514
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	7 cut(s)	5, 8, 11, 178, 201, 321, 339
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	7 cut(s)	5, 8, 11, 178, 201, 321, 339
GsuI	CTGGAG	2 cut(s)	52, 458
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	254, 293, 607
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	60, 451
Hpy188I	TCNGA	4 cut(s)	132, 415, 498, 559
Hpy188III	TCNNGA	6 cut(s)	16, 227, 270, 437, 514, 615
Hpy8I	GTNNAC	2 cut(s)	60, 451
Hpy99I	CGWCG	1 cut(s)	616
HpyAV	CCTTC	5 cut(s)	88, 127, 436, 488, 556
HpyCH4III	ACNGT	2 cut(s)	509, 636
HpyCH4V	TGCA	9 cut(s)	4, 79, 277, 306, 356, 362, 460, 527, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 308, 317
HpyF3I	CTNAG	3 cut(s)	26, 54, 386
Hsp92II	CATG	3 cut(s)	254, 293, 607
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	172, 415
LmnI	GCTCC	3 cut(s)	123, 317, 579
Lsp1109I	GCAGC	4 cut(s)	16, 22, 212, 307
LweI	GCATC	4 cut(s)	343, 349, 536, 563
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	2 cut(s)	174, 417
MboI	GATC	2 cut(s)	172, 415
MhlI	GDGCHC	2 cut(s)	168, 472
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	107, 194
MslI	CAYNNNNRTG	1 cut(s)	465
MspA1I	CMGCKG	2 cut(s)	7, 30
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	256, 297, 465
MvaI	CCWGG	3 cut(s)	256, 297, 465
MwoI	GCNNNNNNNGC	3 cut(s)	10, 308, 317
NdeII	GATC	2 cut(s)	172, 415
NlaIII	CATG	3 cut(s)	254, 293, 607
OliI	CACNNNNGTG	1 cut(s)	465
PasI	CCCWGGG	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	509
PflMI	CCANNNNNTGG	3 cut(s)	120, 261, 436
PkrI	GCNGC	7 cut(s)	6, 9, 12, 179, 202, 322, 340
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	3 cut(s)	254, 295, 463
PspGI	CCWGG	3 cut(s)	254, 295, 463
PspPI	GGNCC	1 cut(s)	600
PsyI	GACNNNGTC	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	465
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	107, 194
SatI	GCNGC	7 cut(s)	5, 8, 11, 178, 201, 321, 339
Sau3AI	GATC	2 cut(s)	172, 415
Sau96I	GGNCC	1 cut(s)	600
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	256, 297, 465
SduI	GDGCHC	2 cut(s)	168, 472
SfaNI	GCATC	4 cut(s)	343, 349, 536, 563
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	465
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	4 cut(s)	7, 178, 338, 531
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	254, 295, 463
TaaI	ACNGT	2 cut(s)	509, 636
TaqI	TCGA	1 cut(s)	614
TasI	AATT	1 cut(s)	211
TauI	GCSGC	3 cut(s)	10, 180, 341
Tru1I	TTAA	2 cut(s)	107, 194
Tru9I	TTAA	2 cut(s)	107, 194
TseI	GCWGC	4 cut(s)	4, 10, 200, 320
TspDTI	ATGAA	1 cut(s)	414
Tth111I	GACNNNGTC	1 cut(s)	509
Van91I	CCANNNNNTGG	3 cut(s)	120, 261, 436
VpaK11BI	GGWCC	1 cut(s)	600
XbaI	TCTAGA	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.