Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8507067.1

Orthogroup ID

OG0007196

Physical Location & Seq

Genomic Coordinates Reverse (-)

581 .. 3349

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8507067.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgcacgataggaacaagaaggcaatggagttaatagccaaagggtggagcgctctgaaggaagttgatagagtcatcgattactgcgagctcaatgatcgccgcctcattcctttattaagggcagcaaaagataattttgagttggctctagagactgacaactcaaatacccatgccaggtattggttgtccagattgcatttgaaataccatgtcccaggggcgtgcaaagctataggagctgctttgttagttgaagcggcaaatatgggtgatgcagacgcacaatatgaacttgcttgtcgtcttagagttgagaatgaatatgtccaatcggaccaacaagctttccattatctggagaaggcagttgaccagttgcaccctggtgctctttaccttctgggtgctgtgtatctgaccggagactgtgtccagaaagatgttgcatccgccttatggtgtttccatagggcatcagagaagggacatgctggtgccgctatagcatatgggtctcttcttcttcaaggtgttgaagtcccagaatctgtgatgaacttgacttcaaaaaggggttctttagccagaaaggcaagaaagaatgcagaaagccttgtaagagaccaggcaggaatggcaagagagcggtttcagatcgctgcaaaagcaggatgtgatcttggactgaaatggttggaaagacttgacgaggaagagaagcatctattgactgaaaatgaaatggtagaaaatgcccaaggaggaaagaaggtgtgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sel1

Protein Analysis

261

Amino Acids

29.12

Weight (kDa)

6.51

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25570 AT2G25570 AT2G25570
fragaria_vesca	FvH4_5g12980 FvH4_5g12980
malus_domestica	MD02G1034400.v1.1 MD15G1175100.v1.1
prunus_persica	Prupe.6G277700_v2.0.a1
pyrus_communis	pycom02g02810 pycom15g15660
rosa_chinensis	RchiOBHm_Chr2g0088741 RchiOBHm_Chr2g0088971 RchiOBHm_Chr2g0089021
rosa_laevigata	RLG00000015983
rosa_multiflora	Rmu_co8507067.1_g000001 Rmu_sc0006835.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152340
rosa_rugosa	Rorug01G0486600
rosa_samantha	Rh2AG042100 Rh2BG040600 Rh2CG041500 Rh2CG042100 Rh2DG041100
rosa_wichuraiana	Rw2G003540 Rw5G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccB7I	CCANNNNNTGG	3 cut(s)	45, 186, 361
AccBSI	CCGCTC	1 cut(s)	652
AciI	CCGC	5 cut(s)	103, 263, 456, 504, 652
AcuI	CTGAAG	1 cut(s)	77
AfeI	AGCGCT	1 cut(s)	52
AfiI	CCNNNNNNNGG	5 cut(s)	45, 180, 186, 361, 462
AgsI	TTSAA	5 cut(s)	208, 260, 533, 542, 573
AjnI	CCWGG	4 cut(s)	179, 220, 388, 630
AleI	CACNNNNGTG	1 cut(s)	390
AluBI	AGCT	4 cut(s)	91, 236, 245, 350
AluI	AGCT	4 cut(s)	91, 236, 245, 350
Alw21I	GWGCWC	2 cut(s)	93, 397
Alw26I	GTCTC	4 cut(s)	149, 423, 525, 621
AlwNI	CAGNNNCTG	1 cut(s)	554
Aor51HI	AGCGCT	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	125, 245, 665
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	93, 397
BbvI	GCAGC	3 cut(s)	137, 232, 652
BciT130I	CCWGG	4 cut(s)	181, 222, 390, 632
BcoDI	GTCTC	4 cut(s)	149, 423, 525, 621
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	2 cut(s)	237, 507
BfoI	RGCGCY	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	596
BisI	GCNGC	6 cut(s)	103, 126, 246, 264, 504, 666
BlsI	GCNGC	6 cut(s)	104, 127, 247, 265, 505, 667
Bme1390I	CCNGG	4 cut(s)	181, 222, 390, 632
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	4 cut(s)	181, 222, 390, 632
BmsI	GCATC	4 cut(s)	268, 461, 488, 736
BpmI	CTGGAG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	78
BsaI	GGTCTC	2 cut(s)	525, 621
BsaJI	CCNNGG	4 cut(s)	220, 221, 388, 763
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 180, 186, 361, 462
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	4 cut(s)	181, 222, 390, 632
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	4 cut(s)	220, 221, 388, 763
BseGI	GGATG	2 cut(s)	452, 683
BseLI	CCNNNNNNNGG	5 cut(s)	45, 180, 186, 361, 462
BseMI	GCAATG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	379
BseXI	GCAGC	3 cut(s)	137, 232, 652
BshNI	GGYRCC	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	93, 397
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	3 cut(s)	203, 504, 530
BslI	CCNNNNNNNGG	5 cut(s)	45, 180, 186, 361, 462
BsmAI	GTCTC	4 cut(s)	149, 423, 525, 621
BsmFI	GGGAC	3 cut(s)	203, 504, 530
BsmI	GAATGC	1 cut(s)	613
Bso31I	GGTCTC	2 cut(s)	525, 621
Bsp1286I	GDGCHC	2 cut(s)	93, 397
Bsp143I	GATC	3 cut(s)	97, 660, 682
BspACI	CCGC	5 cut(s)	103, 263, 456, 504, 652
BspDI	ATCGAT	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	500
BspTNI	GGTCTC	2 cut(s)	525, 621
BsrBI	CCGCTC	1 cut(s)	652
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	4 cut(s)	220, 221, 388, 763
BssMI	GATC	3 cut(s)	97, 660, 682
BssT1I	CCWWGG	1 cut(s)	763
Bst2UI	CCWGG	4 cut(s)	181, 222, 390, 632
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	528, 714
BstC8I	GCNNGC	2 cut(s)	89, 229
BstDEI	CTNAG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	452, 683
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	3 cut(s)	100, 663, 685
BstMAI	GTCTC	4 cut(s)	149, 423, 525, 621
BstMBI	GATC	3 cut(s)	97, 660, 682
BstMWI	GCNNNNNNNGC	7 cut(s)	233, 242, 503, 509, 596, 641, 671
BstNI	CCWGG	4 cut(s)	181, 222, 390, 632
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	4 cut(s)	179, 220, 388, 630
BstSFI	CTRYAG	2 cut(s)	237, 507
BstV1I	GCAGC	3 cut(s)	137, 232, 652
Bsu15I	ATCGAT	1 cut(s)	78
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	452, 683
Cac8I	GCNNGC	2 cut(s)	89, 229
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	340
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	293
CviAII	CATG	3 cut(s)	176, 215, 494
CviJI	RGCY	8 cut(s)	38, 91, 149, 236, 245, 350, 590, 618
CviKI_1	RGCY	8 cut(s)	38, 91, 149, 236, 245, 350, 590, 618
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	3 cut(s)	99, 662, 684
DpnII	GATC	3 cut(s)	97, 660, 682
Eam1104I	CTCTTC	2 cut(s)	528, 714
EarI	CTCTTC	2 cut(s)	528, 714
EciI	GGCGGA	1 cut(s)	445
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	763
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	2 cut(s)	525, 621
Eco47I	GGWCC	1 cut(s)	340
Eco47III	AGCGCT	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	4 cut(s)	179, 220, 388, 630
EcoT14I	CCWWGG	1 cut(s)	763
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	763
FaeI	CATG	3 cut(s)	179, 218, 497
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FaqI	GGGAC	3 cut(s)	203, 504, 530
FatI	CATG	3 cut(s)	175, 214, 493
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	6 cut(s)	103, 126, 246, 264, 504, 666
FokI	GGATG	2 cut(s)	439, 690
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	6 cut(s)	103, 126, 246, 264, 504, 666
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	6 cut(s)	103, 126, 246, 264, 504, 666
GsuI	CTGGAG	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	54
HapII	CCGG	1 cut(s)	426
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	179, 218, 497
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	2 cut(s)	72, 551
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	5 cut(s)	57, 340, 423, 484, 660
Hpy188III	TCNNGA	4 cut(s)	152, 195, 362, 439
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	6 cut(s)	13, 52, 361, 413, 481, 769
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	8 cut(s)	4, 202, 231, 281, 385, 452, 611, 668
HpyF10VI	GCNNNNNNNGC	7 cut(s)	233, 242, 503, 509, 596, 641, 671
HpyF3I	CTNAG	1 cut(s)	311
Hsp92II	CATG	3 cut(s)	179, 218, 497
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	97, 660, 682
LmnI	GCTCC	2 cut(s)	48, 242
Lsp1109I	GCAGC	3 cut(s)	137, 232, 652
LweI	GCATC	4 cut(s)	268, 461, 488, 736
MaeI	CTAG	1 cut(s)	152
MalI	GATC	3 cut(s)	99, 662, 684
MbiI	CCGCTC	1 cut(s)	652
MboI	GATC	3 cut(s)	97, 660, 682
MboII	GAAGA	4 cut(s)	515, 518, 521, 731
MhlI	GDGCHC	2 cut(s)	93, 397
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	3 cut(s)	116, 709, 761
MseI	TTAA	3 cut(s)	32, 119, 784
MslI	CAYNNNNRTG	2 cut(s)	390, 498
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	4 cut(s)	181, 222, 390, 632
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	4 cut(s)	181, 222, 390, 632
MwoI	GCNNNNNNNGC	7 cut(s)	233, 242, 503, 509, 596, 641, 671
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	3 cut(s)	97, 660, 682
NlaIII	CATG	3 cut(s)	179, 218, 497
NlaIV	GGNNCC	1 cut(s)	502
NspI	RCATGY	1 cut(s)	497
OliI	CACNNNNGTG	1 cut(s)	390
PasI	CCCWGGG	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	551
PflFI	GACNNNGTC	1 cut(s)	434
PflMI	CCANNNNNTGG	3 cut(s)	45, 186, 361
PkrI	GCNGC	6 cut(s)	104, 127, 247, 265, 505, 667
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	4 cut(s)	179, 220, 388, 630
PspGI	CCWGG	4 cut(s)	179, 220, 388, 630
PspN4I	GGNNCC	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	554
PsyI	GACNNNGTC	1 cut(s)	434
RseI	CAYNNNNRTG	2 cut(s)	390, 498
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	32, 119, 784
SatI	GCNGC	6 cut(s)	103, 126, 246, 264, 504, 666
Sau3AI	GATC	3 cut(s)	97, 660, 682
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	4 cut(s)	181, 222, 390, 632
SduI	GDGCHC	2 cut(s)	93, 397
SetI	ASST	8 cut(s)	93, 185, 238, 247, 352, 405, 538, 780
SfaNI	GCATC	4 cut(s)	268, 461, 488, 736
SfcI	CTRYAG	2 cut(s)	237, 507
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	2 cut(s)	390, 498
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	5 cut(s)	103, 263, 456, 504, 652
SspMI	CTAG	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	4 cut(s)	179, 220, 388, 630
StyI	CCWWGG	1 cut(s)	763
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	136
TauI	GCSGC	3 cut(s)	105, 266, 506
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	3 cut(s)	32, 119, 784
Tru9I	TTAA	3 cut(s)	32, 119, 784
TseI	GCWGC	3 cut(s)	125, 245, 665
TspDTI	ATGAA	4 cut(s)	309, 339, 575, 759
Tth111I	GACNNNGTC	1 cut(s)	434
Van91I	CCANNNNNTGG	3 cut(s)	45, 186, 361
VpaK11BI	GGWCC	1 cut(s)	340
XbaI	TCTAGA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.