pycom02g02810

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0007196
Physical Location & Seq
Reverse (-)
1770864 .. 1773134
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02810.4

Sequence Viewer

Length: 636 bp
ATGCAGAGGCAGCTGCTGAAGAAGCTCACTCTCCGACCTCCCAATGGACTCACCCAATTCAATCAGCGGAGAGAGATGCACAGCAGGAACAAGAAGGCGATGGAGTTGATAGCAAAAGGCTGGAGCGCCCTCAAGGAAGTCGACCGAGTCATCGATTACTGCGAGCTCAACGATCGCCGCCTCATCCCTCTTTTACGGGGAGCGAAGGAGAATTTTGAGTTGGCACTGGAGGCTGACAATTCGAATACCCATGCCAGGTATTGGTTGTCCAAATTGCATTTGAAATACCATGTCCCGGGAGCCTGCAAAGCTATAGGAGCTGCTTTGTTAGTTGAAGCGGCAGATATGGGTGATCCGGATGCACAGTACGAACTGGGTTGTCGTCTTAGAGTTGATAATGAATACGTTCATTCGGATCAGCAAGCTTTCCATTATATAGAGAAGGCCGTTGACCAGTTGCATCCAGATGCTCTTTACCTTCTTGGTTCTGTGTATCTGACGGGAGACTGCGTGAAAAAAGATATTGCCTCTGCAATGTGGTGTTTCTATAGGGCATCAGATAAGGGACATCCCGGTGCAGCTATAGCATTTGGATCGATCTTCTTCTTAGAGGTGCTGAAATCCCCAAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

212

Amino Acids

23.95

Weight (kDa)

8.22

Isoelectric Point (pI)

22.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 261
AccI GTMKAC 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 3 cut(s) 67, 178, 338
AclWI GGATC 3 cut(s) 347, 423, 601
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 4 cut(s) 44, 255, 261, 295
AgsI TTSAA 3 cut(s) 61, 283, 335
AjnI CCWGG 1 cut(s) 254
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 7 cut(s) 13, 25, 166, 311, 320, 425, 581
AluI AGCT 7 cut(s) 13, 25, 166, 311, 320, 425, 581
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 3 cut(s) 347, 423, 601
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 4 cut(s) 10, 13, 320, 578
ApoI RAATTY 1 cut(s) 211
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 128
AsuC2I CCSGG 3 cut(s) 296, 297, 573
AsuHPI GGTGA 2 cut(s) 43, 362
AsuII TTCGAA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 295
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 22, 307, 590
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 431
BcgI CGANNNNNNTGC 2 cut(s) 576, 610
BciT130I CCWGG 1 cut(s) 256
BcnI CCSGG 3 cut(s) 296, 297, 573
BcoDI GTCTC 1 cut(s) 498
BfmI CTRYAG 3 cut(s) 312, 547, 582
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 6 cut(s) 11, 14, 178, 321, 339, 579
BlsI GCNGC 6 cut(s) 12, 15, 179, 322, 340, 580
Bme1390I CCNGG 4 cut(s) 256, 296, 297, 573
BmeT110I CYCGRG 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 4 cut(s) 256, 296, 297, 573
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 5 cut(s) 66, 349, 457, 469, 563
BmuI ACTGGG 1 cut(s) 383
BpmI CTGGAG 2 cut(s) 142, 248
Bpu14I TTCGAA 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 3 cut(s) 296, 297, 573
Bsa29I ATCGAT 2 cut(s) 153, 596
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 255, 261, 295
Bse1I ACTGG 3 cut(s) 231, 378, 454
Bse3DI GCAATG 1 cut(s) 540
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 1 cut(s) 256
BseCI ATCGAT 2 cut(s) 153, 596
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 4 cut(s) 183, 364, 460, 568
BseLI CCNNNNNNNGG 4 cut(s) 44, 255, 261, 295
BseMI GCAATG 1 cut(s) 540
BseNI ACTGG 3 cut(s) 231, 378, 454
BseXI GCAGC 3 cut(s) 22, 307, 590
BsgI GTGCAG 1 cut(s) 597
Bsh1285I CGRYCG 2 cut(s) 145, 175
BshFI GGCC 1 cut(s) 446
BshVI ATCGAT 2 cut(s) 153, 596
BsiEI CGRYCG 2 cut(s) 145, 175
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 296, 356, 573
BslFI GGGAC 2 cut(s) 278, 579
BslI CCNNNNNNNGG 4 cut(s) 44, 255, 261, 295
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 2 cut(s) 278, 579
BsnI GGCC 1 cut(s) 446
BsoBI CYCGRG 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 168
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 5 cut(s) 172, 352, 415, 593, 597
BspACI CCGC 3 cut(s) 67, 178, 338
BspANI GGCC 1 cut(s) 446
BspDI ATCGAT 2 cut(s) 153, 596
BspEI TCCGGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 3 cut(s) 347, 423, 601
BspT104I TTCGAA 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 3 cut(s) 231, 378, 454
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 5 cut(s) 172, 352, 415, 593, 597
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 164, 304, 423
BstDEI CTNAG 2 cut(s) 386, 607
BstF5I GGATG 4 cut(s) 183, 364, 460, 568
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 5 cut(s) 175, 355, 418, 596, 600
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 5 cut(s) 172, 352, 415, 593, 597
BstMCI CGRYCG 2 cut(s) 145, 175
BstMWI GCNNNNNNNGC 6 cut(s) 10, 22, 230, 308, 317, 584
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 4 cut(s) 254, 294, 295, 571
BstSFI CTRYAG 3 cut(s) 312, 547, 582
BstV1I GCAGC 3 cut(s) 22, 307, 590
Bsu15I ATCGAT 2 cut(s) 153, 596
BsuRI GGCC 1 cut(s) 446
BsuTUI ATCGAT 2 cut(s) 153, 596
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 4 cut(s) 183, 364, 460, 568
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 3 cut(s) 164, 304, 423
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 128
Cfr9I CCCGGG 1 cut(s) 295
ClaI ATCGAT 2 cut(s) 153, 596
Csp6I GTAC 1 cut(s) 367
CviAII CATG 2 cut(s) 251, 290
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 386, 607
DpnI GATC 5 cut(s) 174, 354, 417, 595, 599
DpnII GATC 5 cut(s) 172, 352, 415, 593, 597
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 2 cut(s) 254, 293
FaiI YATR 8 cut(s) 252, 291, 314, 347, 435, 437, 549, 584
FaqI GGGAC 2 cut(s) 278, 579
FatI CATG 2 cut(s) 250, 289
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 6 cut(s) 11, 14, 178, 321, 339, 579
FokI GGATG 4 cut(s) 170, 371, 447, 555
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 6 cut(s) 11, 14, 178, 321, 339, 579
GlaI GCGC 1 cut(s) 127
GluI GCNGC 6 cut(s) 11, 14, 178, 321, 339, 579
GsuI CTGGAG 2 cut(s) 142, 248
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 446
HapII CCGG 3 cut(s) 296, 356, 573
HhaI GCGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 254, 293
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 2 cut(s) 142, 451
HindII GTYRAC 2 cut(s) 142, 451
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 2 cut(s) 48, 147
HpaII CCGG 3 cut(s) 296, 356, 573
HphI GGTGA 2 cut(s) 43, 362
Hpy166II GTNNAC 2 cut(s) 142, 451
Hpy188I TCNGA 4 cut(s) 35, 415, 498, 559
Hpy188III TCNNGA 2 cut(s) 356, 464
Hpy8I GTNNAC 2 cut(s) 142, 451
HpyAV CCTTC 4 cut(s) 88, 199, 436, 488
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 8 cut(s) 4, 79, 277, 306, 362, 460, 533, 578
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 22, 230, 308, 317, 584
HpyF3I CTNAG 2 cut(s) 386, 607
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 2 cut(s) 254, 293
HspAI GCGC 1 cut(s) 126
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 5 cut(s) 172, 352, 415, 593, 597
LmnI GCTCC 4 cut(s) 123, 200, 299, 317
Lsp1109I GCAGC 3 cut(s) 22, 307, 590
LweI GCATC 5 cut(s) 66, 349, 457, 469, 563
MaeII ACGT 1 cut(s) 405
MalI GATC 5 cut(s) 174, 354, 417, 595, 599
MboI GATC 5 cut(s) 172, 352, 415, 593, 597
MboII GAAGA 3 cut(s) 31, 592, 595
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 4 cut(s) 56, 211, 238, 272
MlyI GAGTC 2 cut(s) 42, 156
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 7 cut(s) 48, 140, 191, 198, 223, 538, 604
MroI TCCGGA 1 cut(s) 355
MroXI GAANNNNTTC 1 cut(s) 405
MslI CAYNNNNRTG 2 cut(s) 465, 573
MspA1I CMGCKG 2 cut(s) 13, 67
MspI CCGG 3 cut(s) 296, 356, 573
MspR9I CCNGG 4 cut(s) 256, 296, 297, 573
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 6 cut(s) 10, 22, 230, 308, 317, 584
NciI CCSGG 3 cut(s) 296, 297, 573
NdeII GATC 5 cut(s) 172, 352, 415, 593, 597
NlaIII CATG 2 cut(s) 254, 293
NlaIV GGNNCC 1 cut(s) 301
NspV TTCGAA 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 405
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 261
PkrI GCNGC 6 cut(s) 12, 15, 179, 322, 340, 580
Ple19I CGATCG 1 cut(s) 175
PleI GAGTC 2 cut(s) 42, 155
PpsI GAGTC 2 cut(s) 42, 155
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 146
PvuI CGATCG 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 13
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 2 cut(s) 465, 573
SacI GAGCTC 1 cut(s) 168
SalI GTCGAC 1 cut(s) 140
SatI GCNGC 6 cut(s) 11, 14, 178, 321, 339, 579
Sau3AI GATC 5 cut(s) 172, 352, 415, 593, 597
SchI GAGTC 2 cut(s) 42, 156
ScrFI CCNGG 4 cut(s) 256, 296, 297, 573
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 5 cut(s) 66, 349, 457, 469, 563
SfcI CTRYAG 3 cut(s) 312, 547, 582
SfuI TTCGAA 1 cut(s) 242
SmaI CCCGGG 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 465, 573
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 4 cut(s) 56, 211, 238, 272
SsiI CCGC 3 cut(s) 67, 178, 338
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 4 cut(s) 254, 294, 295, 571
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 1 cut(s) 408
TaqI TCGA 4 cut(s) 141, 153, 242, 596
TaqII GACCGA 1 cut(s) 159
TasI AATT 4 cut(s) 56, 211, 238, 272
TauI GCSGC 2 cut(s) 180, 341
TscAI CASTG 1 cut(s) 231
TseI GCWGC 4 cut(s) 10, 13, 320, 578
TspDTI ATGAA 2 cut(s) 398, 414
TspMI CCCGGG 1 cut(s) 295
TspRI CASTG 1 cut(s) 231
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 261
XapI RAATTY 1 cut(s) 211
XmaI CCCGGG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.