Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Reverse (-)

11519388 .. 11522616

Gene Structure 3229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCTTCAGATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGGAACAAGATGTTGACATTGAGAACCAGTATTATAACTCTAAAGGTATGGTTGAGACTGAACCTGAAGAAGCACTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTGGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAATGATGGAAGCCTATACAGAGATGCTTACATATATCAAGTCAGCAGTCACCAGGAATTACAGCGAAAAATGTATAAACAATATCATGGATTTCGTCTCTGGATCTGCTAGCCAGAACACTGGCCTGCTGCAAGAGTTCTATCAGACCACTTTGAAAGCCCTTGAAGAGGCTAAGAATGAGAGACTCTGGTTCAAGACAAATCTTAAACTCTGCAACATCTGGTTTGACATTGGTGAATACAGACGGATGACTAAGATTCTGAAGGAACTCCATAAGTCTTGTCAAAAGGAAGATGGAACTGATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTTAAGCAACTATACCATAAGGCACTTGCCATCAAGTCTGCCATACCTCATCCTAGGATCATGGGTATAATCCGCGAGTGTGGTGGAAAAATGCACATGGCAGAACGTCAGTGGGAAGAAGCAGCGACAGACTTCTTTGAGGCTTTTAAAAATTACGATGAAGCTGGCAACCAAAGACGTATACAGTGCCTGAAGTATCTTGTTCTGGCGAATATGCTGATGGAGTCAGAAGTGAATCCGTTTGATGGCCAAGAGGCAAAGCCGTACAAAAACGACCCTGAGATTTTGGCAATGACAAATTTGATCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAAGAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACTACATGGAAGATCTGCTGAAGAAAGTGAGAACACAAGTGTTACTGAAGCTGATTAAGCCATACACAAAGATAGGGATTCCGTTCATATCAAAGGAACTGAACGTGCCAGAGACGGATGTGACGGAGTTACTAGTGTCGCTGATACTCGACAGCAGAATCGATGGTCACATTGATGAAATGAACCGTTACTTACTGAGAGGCGACAGTGGCAATGGAAGGAAGTTGCATAAGGCGGTTGATAAATGGAACTCACAGCTCAAGTCTCTTTCTTCAAATATCACCAGCCGAGTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

439

Amino Acids

51.19

Weight (kDa)

5.43

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	326 - 405	5.9e-20	PCI domain
COPS2_C	PF25983	417 - 438	4.1e-06	COP9 signalosome complex subunit 2, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	808
AccII	CGCG	1 cut(s)	702
AciI	CCGC	2 cut(s)	700, 1256
AclWI	GGATC	3 cut(s)	352, 692, 1001
AcoI	YGGCCR	1 cut(s)	874
AcsI	RAATTY	2 cut(s)	591, 925
AcuI	CTGAAG	5 cut(s)	144, 524, 839, 1061, 1088
AfaI	GTAC	1 cut(s)	893
AfiI	CCNNNNNNNGG	2 cut(s)	409, 872
AflII	CTTAAG	2 cut(s)	197, 629
AgsI	TTSAA	6 cut(s)	190, 397, 407, 436, 590, 1296
AhlI	ACTAGT	1 cut(s)	1153
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	7 cut(s)	176, 194, 568, 628, 791, 1072, 1279
AluI	AGCT	7 cut(s)	176, 194, 568, 628, 791, 1072, 1279
Alw26I	GTCTC	5 cut(s)	107, 343, 418, 1127, 1290
AlwI	GGATC	3 cut(s)	352, 692, 1001
AlwNI	CAGNNNCTG	2 cut(s)	14, 817
AoxI	GGCC	2 cut(s)	364, 874
ApeKI	GCWGC	4 cut(s)	370, 568, 749, 935
ApoI	RAATTY	2 cut(s)	591, 925
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AspA2I	CCTAGG	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	283, 488, 1294
AsuNHI	GCTAGC	1 cut(s)	350
AvrII	CCTAGG	1 cut(s)	680
BalI	TGGCCA	1 cut(s)	876
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	4 cut(s)	357, 555, 761, 947
BccI	CCATC	7 cut(s)	154, 241, 530, 665, 841, 866, 1178
BceAI	ACGGC	1 cut(s)	874
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	5 cut(s)	107, 343, 418, 1127, 1290
BcuI	ACTAGT	1 cut(s)	1153
BfaI	CTAG	4 cut(s)	227, 351, 681, 1154
BfrI	CTTAAG	2 cut(s)	197, 629
BglII	AGATCT	2 cut(s)	213, 1033
BisI	GCNGC	4 cut(s)	371, 569, 750, 936
BlnI	CCTAGG	1 cut(s)	680
BlsI	GCNGC	4 cut(s)	372, 570, 751, 937
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	255
BmtI	GCTAGC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	593, 1265
Bsa29I	ATCGAT	1 cut(s)	1182
BsaJI	CCNNGG	1 cut(s)	680
BsaWI	WCCGGW	1 cut(s)	987
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 872
Bse1I	ACTGG	3 cut(s)	85, 185, 367
Bse3DI	GCAATG	2 cut(s)	924, 1240
BseBI	CCWGG	1 cut(s)	295
BseCI	ATCGAT	1 cut(s)	1182
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	4 cut(s)	495, 676, 1009, 1144
BseLI	CCNNNNNNNGG	2 cut(s)	409, 872
BseMI	GCAATG	2 cut(s)	924, 1240
BseMII	CTCAG	4 cut(s)	138, 159, 897, 1208
BseNI	ACTGG	3 cut(s)	85, 185, 367
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	4 cut(s)	357, 555, 761, 947
Bsh1236I	CGCG	1 cut(s)	702
BshFI	GGCC	2 cut(s)	366, 876
BshVI	ATCGAT	1 cut(s)	1182
BsiSI	CCGG	1 cut(s)	988
BslI	CCNNNNNNNGG	2 cut(s)	409, 872
BsmAI	GTCTC	5 cut(s)	107, 343, 418, 1127, 1290
BsmBI	CGTCTC	2 cut(s)	343, 1127
BsnI	GGCC	2 cut(s)	366, 876
Bsp143I	GATC	8 cut(s)	213, 344, 547, 684, 930, 954, 1006, 1033
BspACI	CCGC	2 cut(s)	700, 1256
BspANI	GGCC	2 cut(s)	366, 876
BspCNI	CTCAG	4 cut(s)	139, 160, 898, 1209
BspDI	ATCGAT	1 cut(s)	1182
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	1 cut(s)	165
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	3 cut(s)	352, 692, 1001
BspTI	CTTAAG	2 cut(s)	197, 629
BsrDI	GCAATG	2 cut(s)	924, 1240
BsrI	ACTGG	3 cut(s)	85, 185, 367
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	8 cut(s)	213, 344, 547, 684, 930, 954, 1006, 1033
BssNAI	GTATAC	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	680
Bst1107I	GTATAC	1 cut(s)	809
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	4 cut(s)	208, 813, 1208, 1229
Bst6I	CTCTTC	1 cut(s)	402
BstAFI	CTTAAG	2 cut(s)	197, 629
BstC8I	GCNNGC	3 cut(s)	352, 368, 793
BstDEI	CTNAG	6 cut(s)	147, 168, 414, 495, 906, 1217
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	4 cut(s)	495, 676, 1009, 1144
BstFNI	CGCG	1 cut(s)	702
BstKTI	GATC	8 cut(s)	216, 347, 550, 687, 933, 957, 1009, 1036
BstMAI	GTCTC	5 cut(s)	107, 343, 418, 1127, 1290
BstMBI	GATC	8 cut(s)	213, 344, 547, 684, 930, 954, 1006, 1033
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 1078, 1230
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	4 cut(s)	357, 555, 761, 947
BstX2I	RGATCY	3 cut(s)	213, 344, 1033
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	3 cut(s)	213, 344, 1033
BstZ17I	GTATAC	1 cut(s)	809
Bsu15I	ATCGAT	1 cut(s)	1182
BsuRI	GGCC	2 cut(s)	366, 876
BsuTUI	ATCGAT	1 cut(s)	1182
BtsCI	GGATG	4 cut(s)	495, 676, 1009, 1144
BtsIMutI	CAGTG	5 cut(s)	360, 603, 743, 818, 1234
Cac8I	GCNNGC	3 cut(s)	352, 368, 793
CaiI	CAGNNNCTG	2 cut(s)	14, 817
ClaI	ATCGAT	1 cut(s)	1182
Csp6I	GTAC	1 cut(s)	892
CviAII	CATG	5 cut(s)	19, 328, 688, 724, 1027
CviQI	GTAC	1 cut(s)	892
DdeI	CTNAG	6 cut(s)	147, 168, 414, 495, 906, 1217
DpnI	GATC	8 cut(s)	215, 346, 549, 686, 932, 956, 1008, 1035
DpnII	GATC	8 cut(s)	213, 344, 547, 684, 930, 954, 1006, 1033
DraI	TTTAAA	1 cut(s)	775
EaeI	YGGCCR	1 cut(s)	874
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	680
Eco57I	CTGAAG	5 cut(s)	144, 524, 839, 1061, 1088
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	680
Esp3I	CGTCTC	2 cut(s)	343, 1127
FaeI	CATG	5 cut(s)	22, 331, 691, 727, 1030
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	5 cut(s)	18, 327, 687, 723, 1026
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	808
Fnu4HI	GCNGC	4 cut(s)	371, 569, 750, 936
FokI	GGATG	4 cut(s)	502, 663, 1016, 1151
Fsp4HI	GCNGC	4 cut(s)	371, 569, 750, 936
FspBI	CTAG	4 cut(s)	227, 351, 681, 1154
GluI	GCNGC	4 cut(s)	371, 569, 750, 936
HaeIII	GGCC	2 cut(s)	366, 876
HapII	CCGG	1 cut(s)	988
Hin1II	CATG	5 cut(s)	22, 331, 691, 727, 1030
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	8 cut(s)	33, 426, 499, 851, 862, 1099, 1179, 1311
HpaII	CCGG	1 cut(s)	988
HphI	GGTGA	3 cut(s)	283, 488, 1294
Hpy166II	GTNNAC	2 cut(s)	73, 809
Hpy188I	TCNGA	9 cut(s)	10, 46, 159, 387, 504, 552, 597, 856, 1019
Hpy188III	TCNNGA	3 cut(s)	138, 342, 436
Hpy8I	GTNNAC	2 cut(s)	73, 809
HpyAV	CCTTC	3 cut(s)	499, 607, 1233
HpyCH4III	ACNGT	4 cut(s)	208, 813, 1208, 1229
HpyCH4IV	ACGT	3 cut(s)	733, 805, 1125
HpyCH4V	TGCA	5 cut(s)	373, 456, 584, 721, 1249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 1078, 1230
HpyF3I	CTNAG	6 cut(s)	147, 168, 414, 495, 906, 1217
HpySE526I	ACGT	3 cut(s)	733, 805, 1125
Hsp92II	CATG	5 cut(s)	22, 331, 691, 727, 1030
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	8 cut(s)	213, 344, 547, 684, 930, 954, 1006, 1033
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	4 cut(s)	357, 555, 761, 947
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	4 cut(s)	227, 351, 681, 1154
MaeII	ACGT	3 cut(s)	733, 805, 1125
MaeIII	GTNAC	7 cut(s)	289, 983, 1062, 1141, 1149, 1187, 1208
MalI	GATC	8 cut(s)	215, 346, 549, 686, 932, 956, 1008, 1035
MboI	GATC	8 cut(s)	213, 344, 547, 684, 930, 954, 1006, 1033
MboII	GAAGA	9 cut(s)	137, 223, 419, 545, 565, 755, 1043, 1054, 1284
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	3 cut(s)	213, 344, 1033
MlsI	TGGCCA	1 cut(s)	876
MluCI	AATT	5 cut(s)	298, 585, 591, 778, 925
MluNI	TGGCCA	1 cut(s)	876
MlyI	GAGTC	3 cut(s)	420, 860, 1320
Mox20I	TGGCCA	1 cut(s)	876
MscI	TGGCCA	1 cut(s)	876
MseI	TTAA	6 cut(s)	198, 447, 630, 774, 1077, 1318
MslI	CAYNNNNRTG	1 cut(s)	1194
Msp20I	TGGCCA	1 cut(s)	876
MspA1I	CMGCKG	1 cut(s)	568
MspCI	CTTAAG	2 cut(s)	197, 629
MspI	CCGG	1 cut(s)	988
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	3 cut(s)	11, 1078, 1230
NdeII	GATC	8 cut(s)	213, 344, 547, 684, 930, 954, 1006, 1033
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	5 cut(s)	22, 331, 691, 727, 1030
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	3 cut(s)	289, 1141, 1187
PfeI	GAWTC	5 cut(s)	33, 499, 862, 1099, 1179
PkrI	GCNGC	4 cut(s)	372, 570, 751, 937
PleI	GAGTC	3 cut(s)	420, 859, 1319
PpsI	GAGTC	3 cut(s)	420, 859, 1319
PsiI	TTATAA	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	165
PstNI	CAGNNNCTG	2 cut(s)	14, 817
PsuI	RGATCY	3 cut(s)	213, 344, 1033
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	1 cut(s)	893
RsaNI	GTAC	1 cut(s)	892
RseI	CAYNNNNRTG	1 cut(s)	1194
SaqAI	TTAA	6 cut(s)	198, 447, 630, 774, 1077, 1318
SatI	GCNGC	4 cut(s)	371, 569, 750, 936
Sau3AI	GATC	8 cut(s)	213, 344, 547, 684, 930, 954, 1006, 1033
SchI	GAGTC	3 cut(s)	420, 860, 1320
ScrFI	CCNGG	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	1194
SmlI	CTYRAG	4 cut(s)	197, 572, 629, 1280
SmoI	CTYRAG	4 cut(s)	197, 572, 629, 1280
SpeI	ACTAGT	1 cut(s)	1153
Sse9I	AATT	5 cut(s)	298, 585, 591, 778, 925
SsiI	CCGC	2 cut(s)	700, 1256
SspMI	CTAG	4 cut(s)	227, 351, 681, 1154
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	4 cut(s)	208, 813, 1208, 1229
TaiI	ACGT	3 cut(s)	736, 808, 1128
TaqI	TCGA	3 cut(s)	36, 1170, 1182
TasI	AATT	5 cut(s)	298, 585, 591, 778, 925
TfiI	GAWTC	5 cut(s)	33, 499, 862, 1099, 1179
Tru1I	TTAA	6 cut(s)	198, 447, 630, 774, 1077, 1318
Tru9I	TTAA	6 cut(s)	198, 447, 630, 774, 1077, 1318
TscAI	CASTG	5 cut(s)	367, 610, 743, 818, 1234
TseFI	GTSAC	3 cut(s)	289, 1141, 1187
TseI	GCWGC	4 cut(s)	370, 568, 749, 935
Tsp45I	GTSAC	3 cut(s)	289, 1141, 1187
TspDTI	ATGAA	5 cut(s)	801, 1003, 1096, 1212, 1217
TspGWI	ACGGA	5 cut(s)	502, 855, 1092, 1151, 1160
TspRI	CASTG	5 cut(s)	367, 610, 743, 818, 1234
Vha464I	CTTAAG	2 cut(s)	197, 629
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	2 cut(s)	591, 925
XmaJI	CCTAGG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	808
XspI	CTAG	4 cut(s)	227, 351, 681, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.