Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Forward (+)

28865982 .. 28867894

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0256900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCTAGACCCAACGACGGAGCTCCGAGTGCCCAAAACATAATCCCCGGCGACGGAATTGGATCGCTCATAATGAACGCCGTCGAGCAGGTGATCGAGTACCTCGATCTGTTTGGTTTTGATGCAATTTATCAATGGTTCGGGCTTGTCAAGGAGTTATATGGGAACCAGTATTTCATTAATTTTGATATACTAAACATCAAGGTAATTGTTAAGCTTAAGTATGCAGATCTTGTTTCCATACTTCCAACCAATGTCAGTGTAGTAGTATGGCCCATTCAAATCTGGAGATTTAGTGTAAATATATCAACCATGAATACACTGGAAGGTCCAACTTGTCTACTCTATGCAGAGGATGCCTTACGAACTATGAGCTTACCTGAAGTTATAAGCAAAGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

134

Amino Acids

15.06

Weight (kDa)

4.37

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	340
AclWI	GGATC	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	17, 53
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	281
AluBI	AGCT	3 cut(s)	23, 217, 375
AluI	AGCT	3 cut(s)	23, 217, 375
Alw21I	GWGCWC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	1 cut(s)	272
AseI	ATTAAT	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	273, 329
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	2 cut(s)	6, 403
BfrI	CTTAAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	273, 329
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	112, 346
BpmI	CTGGAG	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 53
Bse1I	ACTGG	2 cut(s)	169, 327
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	17, 53
BseNI	ACTGG	2 cut(s)	169, 327
BseSI	GKGCMC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	17, 53
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	25, 34
Bsp143I	GATC	4 cut(s)	62, 93, 106, 229
BspANI	GGCC	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	167
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	169, 327
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	4 cut(s)	62, 93, 106, 229
BstAFI	CTTAAG	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	4 cut(s)	65, 96, 109, 232
BstMBI	GATC	4 cut(s)	62, 93, 106, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 356
BstSCI	CCNGG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	265, 320
BveI	ACCTGC	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	273, 329
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	5 cut(s)	23, 145, 217, 274, 375
CviKI_1	RGCY	5 cut(s)	23, 145, 217, 274, 375
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	4 cut(s)	64, 95, 108, 231
DpnII	GATC	4 cut(s)	62, 93, 106, 229
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	1 cut(s)	316
FatI	CATG	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	340
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	25
FspBI	CTAG	2 cut(s)	6, 403
GsuI	CTGGAG	1 cut(s)	307
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	215
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	341
Hpy99I	CGWCG	3 cut(s)	20, 56, 86
HpyAV	CCTTC	1 cut(s)	320
HpyCH4V	TGCA	3 cut(s)	125, 227, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 356
Hsp92II	CATG	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	62, 93, 106, 229
LmnI	GCTCC	2 cut(s)	20, 28
LpnPI	CCDG	6 cut(s)	61, 74, 182, 271, 308, 393
LweI	GCATC	2 cut(s)	112, 346
MaeI	CTAG	2 cut(s)	6, 403
MalI	GATC	4 cut(s)	64, 95, 108, 231
MboI	GATC	4 cut(s)	62, 93, 106, 229
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	2 cut(s)	25, 34
MluCI	AATT	4 cut(s)	57, 126, 181, 207
MmeI	TCCRAC	2 cut(s)	272, 356
MnlI	CCTC	2 cut(s)	113, 346
MseI	TTAA	3 cut(s)	180, 213, 219
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	29, 356
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	4 cut(s)	62, 93, 106, 229
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PshBI	ATTAAT	1 cut(s)	180
PsiI	TTATAA	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	273, 329
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	180, 213, 219
Sau3AI	GATC	4 cut(s)	62, 93, 106, 229
Sau96I	GGNCC	2 cut(s)	273, 329
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	25, 34
SetI	ASST	8 cut(s)	25, 93, 105, 207, 219, 331, 377, 382
SfaNI	GCATC	2 cut(s)	112, 346
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	4 cut(s)	57, 126, 181, 207
SspMI	CTAG	2 cut(s)	6, 403
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	3 cut(s)	84, 96, 105
TasI	AATT	4 cut(s)	57, 126, 181, 207
Tru1I	TTAA	3 cut(s)	180, 213, 219
Tru9I	TTAA	3 cut(s)	180, 213, 219
TscAI	CASTG	2 cut(s)	265, 327
TspDTI	ATGAA	3 cut(s)	89, 166, 329
TspGWI	ACGGA	2 cut(s)	33, 69
TspRI	CASTG	2 cut(s)	265, 327
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	340
XspI	CTAG	2 cut(s)	6, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.