MD00G1108200.v1.1

Cop9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
22709016 .. 22715100
6085 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1108200.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGAGGAATCCGAACCCTCTTTCTCTTCGGTCTCCTCTCTGCTCTGATTTCAGTAGCTGCCGAATCCTGAACGCTTTGAAAACCCAGATTCCATCTCGGTTCTGTTCAGTCATGGGCTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGATGAGGAACCTGAGGAACAGGACGTCGACATTGAGAACCAATATTACAACTCTAAGGGTTTGGTTGAGACAGATCCAGAAGGAGCACTTTCGGGATTCGATGAAGTTGTAAGCATGGAGCCTGAGAAGGCCGAGTGGGGATTTAAAGCCTTGAAGCAAACCGTGAAGCTCTATTATCGTCTGGGGAGGTATAAAGAAATGATGGATGCATACAGGGTGATGTTGACATACATCAAATCAGCAGTAACAAGGAATTACAGTGAAAAATGTATAAACAACATTATGGATTTTGTTTCTGGTTCAGCTAGTCAGAACTTTGGTCTCCTGCAAGAGTTCTATCAGACCACTCTAAAGGCCCTTGAAGAGGCAAAGAATGAGAGACTTTGGTTTAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGGGTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTCCATAAATCCTGTCAAAAGGACGATGGTACTGATGACCAAAAGAAAGGAAGTCAACTCCTAGAGGTTTACGCTATTGAGATTCAAATGTACACTGAGACTAAAAATAACAAAAAGCTTAAGCAATTATACCAAAAAGCTCTTGCAATCAAGTCAGCAATACCTCATCCTAGGATCATGGGAATAATTCGTGAGTGTGGGGGTAAGATGCATATGGCTGAGCGTCAGTGGGCAGATGCAGCCACAGATTTTTTTGAAGCCTTTAAGAACTATGATGAAGCTGGGAACCAGAGGCGTATACAATGCTTGAAGTATTTAGTTCTGGCTAATATGCTGATGGAGTCAGAAGTTAATCCATTTGATGGTCAAGAAGCAAAGCCGTATAAAAACGATCCTGAGATCTTGGCAATGACAAATCTGATTGCAGCATATCAACGAAATGAGATACTGGAGTTTGAGAAAATTCTTAAGAGTAACAGGAGGACAATTATGGATGATCCATTCATCCGAAACTATATTGAAGATCTGTTGAAGAATGTTAGGACACAAGTGCTGCTCAAACTTATCAAGCCATACACGAGAATTCGGATTCCCTTCATATCAAAGGAACTTAATGTTCCGGAGAAAGATGTGGAGCAACTTTTGGTTTCACTTATATTGGATAACCGAATTGATGGACATATTGATCAGGTGAACCGGCTCTTAGAGCGTGGTGACAGGTCAAAGGGAATGAAGAAGTATGCTGCCGTAGATAAATGGAACACTCAGCTAAGGTCTCTTTACCAAACTATCAGTAACCGAGTATATTGA

Protein Analysis

477

Amino Acids

55.49

Weight (kDa)

6.93

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 363 - 443 1.8e-23 PCI domain
COPS2_C PF25983 451 - 475 1.8e-13 COP9 signalosome complex subunit 2, C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccB7I CCANNNNNTGG 1 cut(s) 983
AccI GTMKAC 2 cut(s) 183, 919
AccIII TCCGGA 1 cut(s) 1240
AclWI GGATC 4 cut(s) 224, 803, 1007, 1112
AcsI RAATTY 3 cut(s) 570, 1083, 1203
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 3 cut(s) 152, 652, 713
AfiI CCNNNNNNNGG 2 cut(s) 520, 983
AflII CTTAAG 3 cut(s) 557, 740, 1088
AgsI TTSAA 9 cut(s) 79, 310, 518, 616, 707, 878, 931, 1142, 1153
AluBI AGCT 8 cut(s) 57, 325, 461, 562, 739, 761, 902, 1390
AluI AGCT 8 cut(s) 57, 325, 461, 562, 739, 761, 902, 1390
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 6 cut(s) 36, 218, 482, 529, 713, 1401
AlwI GGATC 4 cut(s) 224, 803, 1007, 1112
AlwNI CAGNNNCTG 1 cut(s) 57
Aor13HI TCCGGA 1 cut(s) 1240
AoxI GGCC 2 cut(s) 285, 510
ApeKI GCWGC 5 cut(s) 57, 860, 1046, 1174, 1364
ApoI RAATTY 3 cut(s) 570, 1083, 1203
AspA2I CCTAGG 1 cut(s) 791
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 4 cut(s) 385, 599, 1324, 1346
AvrII CCTAGG 1 cut(s) 791
AxyI CCTNAGG 1 cut(s) 168
BaeI ACNNNNGTAYC 2 cut(s) 1058, 1091
BanII GRGCYC 1 cut(s) 119
BauI CACGAG 1 cut(s) 1198
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 5 cut(s) 44, 872, 1058, 1161, 1351
BccI CCATC 6 cut(s) 100, 352, 641, 952, 977, 1289
BceAI ACGGC 2 cut(s) 985, 1352
BclI TGATCA 1 cut(s) 1306
BcoDI GTCTC 6 cut(s) 36, 218, 482, 529, 713, 1401
BfaI CTAG 3 cut(s) 462, 683, 792
BfrI CTTAAG 3 cut(s) 557, 740, 1088
BglII AGATCT 2 cut(s) 1020, 1144
BisI GCNGC 5 cut(s) 58, 861, 1047, 1175, 1365
BlnI CCTAGG 1 cut(s) 791
BlpI GCTNAGC 1 cut(s) 840
BlsI GCNGC 5 cut(s) 59, 862, 1048, 1176, 1366
BmcAI AGTACT 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 4 cut(s) 118, 165, 276, 908
BmsI GCATC 4 cut(s) 112, 352, 819, 847
BpmI CTGGAG 1 cut(s) 1091
Bpu10I CCTNAGC 1 cut(s) 1391
Bpu1102I GCTNAGC 1 cut(s) 840
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 3 cut(s) 36, 482, 1401
BsaJI CCNNGG 1 cut(s) 791
BsaWI WCCGGW 1 cut(s) 1240
Bsc4I CCNNNNNNNGG 2 cut(s) 520, 983
Bse118I RCCGGY 1 cut(s) 1317
Bse1I ACTGG 1 cut(s) 1074
Bse21I CCTNAGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 1035
BseAI TCCGGA 1 cut(s) 1240
BseDI CCNNGG 1 cut(s) 791
BseGI GGATG 5 cut(s) 163, 367, 787, 1120, 1125
BseLI CCNNNNNNNGG 2 cut(s) 520, 983
BseMI GCAATG 1 cut(s) 1035
BseMII CTCAG 6 cut(s) 159, 270, 708, 831, 1008, 1400
BseNI ACTGG 1 cut(s) 1074
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 5 cut(s) 44, 872, 1058, 1161, 1351
BseYI CCCAGC 1 cut(s) 902
BshFI GGCC 2 cut(s) 287, 512
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 1241, 1318
BslI CCNNNNNNNGG 2 cut(s) 520, 983
BsmAI GTCTC 6 cut(s) 36, 218, 482, 529, 713, 1401
BsnI GGCC 2 cut(s) 287, 512
Bso31I GGTCTC 3 cut(s) 36, 482, 1401
Bsp1286I GDGCHC 2 cut(s) 119, 244
Bsp13I TCCGGA 1 cut(s) 1240
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 7 cut(s) 229, 795, 1012, 1020, 1117, 1144, 1306
Bsp1720I GCTNAGC 1 cut(s) 840
BspANI GGCC 2 cut(s) 287, 512
BspCNI CTCAG 6 cut(s) 160, 271, 709, 832, 1009, 1399
BspEI TCCGGA 1 cut(s) 1240
BspLI GGNNCC 4 cut(s) 118, 165, 276, 908
BspPI GGATC 4 cut(s) 224, 803, 1007, 1112
BspTI CTTAAG 3 cut(s) 557, 740, 1088
BspTNI GGTCTC 3 cut(s) 36, 482, 1401
BsrDI GCAATG 1 cut(s) 1035
BsrFI RCCGGY 1 cut(s) 1317
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 1 cut(s) 1074
BssAI RCCGGY 1 cut(s) 1317
BssECI CCNNGG 1 cut(s) 791
BssMI GATC 7 cut(s) 229, 795, 1012, 1020, 1117, 1144, 1306
BssNAI GTATAC 1 cut(s) 920
BssNI GRCGYC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 1198
BssT1I CCWWGG 1 cut(s) 791
Bst1107I GTATAC 1 cut(s) 920
Bst2BI CACGAG 1 cut(s) 1198
Bst4CI ACNGT 2 cut(s) 319, 416
Bst6I CTCTTC 2 cut(s) 30, 513
BstACI GRCGYC 1 cut(s) 180
BstAFI CTTAAG 3 cut(s) 557, 740, 1088
BstAUI TGTACA 1 cut(s) 711
BstDEI CTNAG 9 cut(s) 168, 210, 279, 717, 840, 1017, 1324, 1386, 1391
BstENI CCTNNNNNAGG 1 cut(s) 518
BstF5I GGATG 5 cut(s) 163, 367, 787, 1120, 1125
BstKTI GATC 7 cut(s) 232, 798, 1015, 1023, 1120, 1147, 1309
BstMAI GTCTC 6 cut(s) 36, 218, 482, 529, 713, 1401
BstMBI GATC 7 cut(s) 229, 795, 1012, 1020, 1117, 1144, 1306
BstMWI GCNNNNNNNGC 2 cut(s) 860, 1327
BstV1I GCAGC 5 cut(s) 44, 872, 1058, 1161, 1351
BstX2I RGATCY 3 cut(s) 229, 1020, 1144
BstYI RGATCY 3 cut(s) 229, 1020, 1144
BstZ17I GTATAC 1 cut(s) 920
Bsu36I CCTNAGG 1 cut(s) 168
BsuRI GGCC 2 cut(s) 287, 512
BtsCI GGATG 5 cut(s) 163, 367, 787, 1120, 1125
BtsIMutI CAGTG 3 cut(s) 421, 714, 854
CaiI CAGNNNCTG 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 1317
Cfr13I GGNCC 1 cut(s) 511
CseI GACGC 1 cut(s) 833
Csp6I GTAC 3 cut(s) 151, 651, 712
CviAII CATG 3 cut(s) 112, 271, 799
CviQI GTAC 3 cut(s) 151, 651, 712
DdeI CTNAG 9 cut(s) 168, 210, 279, 717, 840, 1017, 1324, 1386, 1391
DpnI GATC 7 cut(s) 231, 797, 1014, 1022, 1119, 1146, 1308
DpnII GATC 7 cut(s) 229, 795, 1012, 1020, 1117, 1144, 1306
DraI TTTAAA 1 cut(s) 301
Eam1104I CTCTTC 2 cut(s) 30, 513
EarI CTCTTC 2 cut(s) 30, 513
Eco130I CCWWGG 1 cut(s) 791
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 3 cut(s) 36, 482, 1401
Eco81I CCTNAGG 1 cut(s) 168
EcoNI CCTNNNNNAGG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 511
EcoRI GAATTC 1 cut(s) 1203
EcoT14I CCWWGG 1 cut(s) 791
EcoT22I ATGCAT 2 cut(s) 367, 834
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 791
FaeI CATG 3 cut(s) 115, 274, 802
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FatI CATG 3 cut(s) 111, 270, 798
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 1 cut(s) 1306
FblI GTMKAC 2 cut(s) 183, 919
Fnu4HI GCNGC 5 cut(s) 58, 861, 1047, 1175, 1365
FokI GGATG 5 cut(s) 170, 374, 774, 1112, 1127
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 5 cut(s) 58, 861, 1047, 1175, 1365
FspBI CTAG 3 cut(s) 462, 683, 792
GluI GCNGC 5 cut(s) 58, 861, 1047, 1175, 1365
GsaI CCCAGC 1 cut(s) 906
GsuI CTGGAG 1 cut(s) 1091
HaeIII GGCC 2 cut(s) 287, 512
HapII CCGG 2 cut(s) 1241, 1318
HgaI GACGC 1 cut(s) 833
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 3 cut(s) 115, 274, 802
HincII GTYRAC 3 cut(s) 184, 381, 677
HindII GTYRAC 3 cut(s) 184, 381, 677
HindIII AAGCTT 2 cut(s) 560, 737
HinfI GANTC 8 cut(s) 7, 63, 88, 144, 252, 703, 962, 1210
HpaII CCGG 2 cut(s) 1241, 1318
HphI GGTGA 4 cut(s) 385, 599, 1324, 1346
Hpy166II GTNNAC 7 cut(s) 184, 381, 677, 691, 714, 920, 1315
Hpy188III TCNNGA 7 cut(s) 67, 233, 249, 812, 989, 1016, 1241
Hpy8I GTNNAC 7 cut(s) 184, 381, 677, 691, 714, 920, 1315
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 4 cut(s) 230, 277, 610, 1225
HpyCH4III ACNGT 2 cut(s) 319, 416
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 7 cut(s) 365, 484, 567, 767, 832, 860, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 860, 1327
HpyF3I CTNAG 9 cut(s) 168, 210, 279, 717, 840, 1017, 1324, 1386, 1391
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 3 cut(s) 115, 274, 802
Kpn2I TCCGGA 1 cut(s) 1240
Ksp22I TGATCA 1 cut(s) 1306
Kzo9I GATC 7 cut(s) 229, 795, 1012, 1020, 1117, 1144, 1306
LmnI GCTCC 4 cut(s) 122, 239, 274, 1255
Lsp1109I GCAGC 5 cut(s) 44, 872, 1058, 1161, 1351
LweI GCATC 4 cut(s) 112, 352, 819, 847
MaeI CTAG 3 cut(s) 462, 683, 792
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 4 cut(s) 400, 1094, 1334, 1415
MalI GATC 7 cut(s) 231, 797, 1014, 1022, 1119, 1146, 1308
MboI GATC 7 cut(s) 229, 795, 1012, 1020, 1117, 1144, 1306
MboII GAAGA 5 cut(s) 17, 530, 1154, 1165, 1366
MflI RGATCY 3 cut(s) 229, 1020, 1144
MhlI GDGCHC 2 cut(s) 119, 244
MluCI AATT 8 cut(s) 409, 570, 746, 807, 1083, 1107, 1203, 1290
MlyI GAGTC 1 cut(s) 971
Mph1103I ATGCAT 2 cut(s) 367, 834
MroI TCCGGA 1 cut(s) 1240
MseI TTAA 8 cut(s) 300, 546, 558, 741, 885, 972, 1089, 1233
MspCI CTTAAG 3 cut(s) 557, 740, 1088
MspI CCGG 2 cut(s) 1241, 1318
MwoI GCNNNNNNNGC 2 cut(s) 860, 1327
NdeI CATATG 1 cut(s) 834
NdeII GATC 7 cut(s) 229, 795, 1012, 1020, 1117, 1144, 1306
NlaIII CATG 3 cut(s) 115, 274, 802
NlaIV GGNNCC 4 cut(s) 118, 165, 276, 908
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 1334
NsiI ATGCAT 2 cut(s) 367, 834
PfeI GAWTC 7 cut(s) 7, 63, 88, 144, 252, 703, 1210
PflMI CCANNNNNTGG 1 cut(s) 983
PkrI GCNGC 5 cut(s) 59, 862, 1048, 1176, 1366
PleI GAGTC 1 cut(s) 970
PpsI GAGTC 1 cut(s) 970
PspFI CCCAGC 1 cut(s) 902
PspN4I GGNNCC 4 cut(s) 118, 165, 276, 908
PspPI GGNCC 1 cut(s) 511
PsrI GAACNNNNNNTAC 2 cut(s) 185, 217
PstNI CAGNNNCTG 1 cut(s) 57
PsuI RGATCY 3 cut(s) 229, 1020, 1144
RsaI GTAC 3 cut(s) 152, 652, 713
RsaNI GTAC 3 cut(s) 151, 651, 712
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 8 cut(s) 300, 546, 558, 741, 885, 972, 1089, 1233
SatI GCNGC 5 cut(s) 58, 861, 1047, 1175, 1365
Sau3AI GATC 7 cut(s) 229, 795, 1012, 1020, 1117, 1144, 1306
Sau96I GGNCC 1 cut(s) 511
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 1 cut(s) 971
SduI GDGCHC 2 cut(s) 119, 244
SfaNI GCATC 4 cut(s) 112, 352, 819, 847
SmlI CTYRAG 3 cut(s) 557, 740, 1088
SmoI CTYRAG 3 cut(s) 557, 740, 1088
Sse9I AATT 8 cut(s) 409, 570, 746, 807, 1083, 1107, 1203, 1290
SspI AATATT 1 cut(s) 200
SspMI CTAG 3 cut(s) 462, 683, 792
StyI CCWWGG 1 cut(s) 791
TaaI ACNGT 2 cut(s) 319, 416
TaiI ACGT 1 cut(s) 183
TaqI TCGA 3 cut(s) 147, 183, 255
TaqII GACCGA 1 cut(s) 18
TasI AATT 8 cut(s) 409, 570, 746, 807, 1083, 1107, 1203, 1290
TatI WGTACW 2 cut(s) 150, 711
TfiI GAWTC 7 cut(s) 7, 63, 88, 144, 252, 703, 1210
Tru1I TTAA 8 cut(s) 300, 546, 558, 741, 885, 972, 1089, 1233
Tru9I TTAA 8 cut(s) 300, 546, 558, 741, 885, 972, 1089, 1233
TscAI CASTG 3 cut(s) 421, 721, 854
TseFI GTSAC 1 cut(s) 1334
TseI GCWGC 5 cut(s) 57, 860, 1046, 1174, 1364
Tsp45I GTSAC 1 cut(s) 1334
TspDTI ATGAA 5 cut(s) 273, 912, 1114, 1207, 1367
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 421, 721, 854
Van91I CCANNNNNTGG 1 cut(s) 983
Vha464I CTTAAG 3 cut(s) 557, 740, 1088
XagI CCTNNNNNAGG 1 cut(s) 518
XapI RAATTY 3 cut(s) 570, 1083, 1203
XmaJI CCTAGG 1 cut(s) 791
XmiI GTMKAC 2 cut(s) 183, 919
XspI CTAG 3 cut(s) 462, 683, 792
ZraI GACGTC 1 cut(s) 181
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 2 cut(s) 367, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.