FvH4_4g27570

Cop9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
28516531 .. 28521078
4548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27570.t1

Sequence Viewer

Length: 1320 bp
ATGGGTTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGATGAAGAGCCTGAGGAGCAGGATGTTGATATCGAGAACCAGTATTACAACTCCAAAGGTTTGGTTGAGACTGATCCAGAAGAAGCGCTCTCAGGATTTCAAGAAGTAATTCGCATGGAGCCTGAGAAGGCTGAGTGGGGATTTAAAGCTTTGAAGCAAACTGTGAAGATCCATTATCGTCTCGGGAGGTATAAAGAGATGATGGATTCATACAGAGAGATGCTGACGTACATCAGATCAGCTGTGACACGGAATTACAGTGAAAAATGTATAAACAACATTATGGATTTTGTGTCTGGATCAGCTAGTCAGAACTCTGGTTTCCTGCAAGAGTTTTATCAGACTACTCTAAAGGCCCTGGAAGAGGCAAAGAACGAGAGGCTTTGGTTCAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGAGTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGATCAAAAGAAAGGAAGCCAACTTTTGGAGGTTTATGCAATTGAGATTCAAATGTACACCGAGACTAAAAATAACAAAAAGCTGAAGCAATTATACCAAAAGGCACTTGCAATCAAGTCAGCAATACCCCATCCTAGGATCATGGGAATAATTCGTGAGTGTGGGGGTAAGATGCATATGGCAGAGCGTCAGTGGGCAGAGGCCGCTACTGATTTCTTTGAAGCTTTTAAGAATTATGATGAAGCGGGGAACCAGAGGCGTATACAATGCTTGAAATATTTAGTTCTGGCTAACATGCTGATGCAGTCTGAGGTTAATCCATTTGATGGTCAAGAAGCAAAGCCGTATAAAAATGATCCTGAGATCTTGGCAATGACAAATCTGGTTGCAGCATATCAACGAAATGAGATATTGGAGTTTGAAAAAATTCTGAAGAGTAACAGGAAGACAATTATGGATGATCCATTCATTCGGAACTATATTGAAGACCTATTGAAGAATATTAGGACACAAGTTTTGCTTAAACTAATCAAGCCGTACACACGAATCCGGATTCCATTCATATCAAAGGAACTTAATGTCCCTGAGAAAGATGTTGAGCAGCTCTTGGTTTCACTAATTTTAGATAACAGAATCGATGGACATATTGACCAGGTGAACCAGATCATGGAGCGTGGTGACAGGTCAAAGGGAAGGAAGAAGTATGCTGCCATAGATAAATGGAACACGCAGCTGAAGTCTCTGTCCCAAACTATTGGTAACCGAGTATATTGA

Protein Analysis

440

Amino Acids

51.47

Weight (kDa)

6.14

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 326 - 406 1.9e-24 PCI domain
COPS2_C PF25983 415 - 438 1.4e-12 COP9 signalosome complex subunit 2, C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 571, 872, 1213
AccI GTMKAC 1 cut(s) 808
AccIII TCCGGA 1 cut(s) 1095
AciI CCGC 2 cut(s) 750, 791
AclWI GGATC 6 cut(s) 113, 208, 352, 692, 896, 1001
AcsI RAATTY 2 cut(s) 459, 972
AcuI CTGAAG 3 cut(s) 650, 998, 1301
AfaI GTAC 5 cut(s) 41, 275, 541, 602, 1085
AfeI AGCGCT 1 cut(s) 132
AfiI CCNNNNNNNGG 5 cut(s) 409, 571, 681, 872, 1213
AflII CTTAAG 1 cut(s) 446
AjnI CCWGG 2 cut(s) 402, 1197
AloI GAACNNNNNNTCC 2 cut(s) 1110, 1142
AluBI AGCT 8 cut(s) 194, 287, 350, 451, 628, 770, 1150, 1279
AluI AGCT 8 cut(s) 194, 287, 350, 451, 628, 770, 1150, 1279
Alw26I GTCTC 4 cut(s) 107, 230, 602, 1290
AlwI GGATC 6 cut(s) 113, 208, 352, 692, 896, 1001
Ama87I CYCGRG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 1095
Aor51HI AGCGCT 1 cut(s) 132
AoxI GGCC 2 cut(s) 399, 747
ApeKI GCWGC 4 cut(s) 935, 1147, 1253, 1276
ApoI RAATTY 2 cut(s) 459, 972
ArsI GACNNNNNNTTYG 2 cut(s) 1045, 1077
Asp700I GAANNNNTTC 2 cut(s) 153, 972
AspA2I CCTAGG 1 cut(s) 680
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 1213, 1235
AvaI CYCGRG 1 cut(s) 227
AvrII CCTAGG 1 cut(s) 680
AxyI CCTNAGG 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
BbsI GAAGAC 2 cut(s) 998, 1038
BbvI GCAGC 4 cut(s) 947, 1159, 1240, 1288
BccI CCATC 5 cut(s) 241, 530, 684, 866, 1178
BceAI ACGGC 2 cut(s) 874, 1066
BciT130I CCWGG 2 cut(s) 404, 1199
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 4 cut(s) 107, 230, 602, 1290
BfaI CTAG 2 cut(s) 351, 681
BfoI RGCGCY 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 446
BglII AGATCT 1 cut(s) 909
BisI GCNGC 5 cut(s) 750, 936, 1148, 1254, 1277
BlnI CCTAGG 1 cut(s) 680
BlsI GCNGC 5 cut(s) 751, 937, 1149, 1255, 1278
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 404, 1199
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 3 cut(s) 7, 165, 797
BmrFI CCNGG 2 cut(s) 404, 1199
BmsI GCATC 3 cut(s) 255, 708, 837
BpiI GAAGAC 2 cut(s) 998, 1038
Bsa29I ATCGAT 1 cut(s) 1182
BsaJI CCNNGG 2 cut(s) 402, 680
BsaWI WCCGGW 1 cut(s) 1095
Bsc4I CCNNNNNNNGG 5 cut(s) 409, 571, 681, 872, 1213
Bse1I ACTGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 924
BseAI TCCGGA 1 cut(s) 1095
BseBI CCWGG 2 cut(s) 404, 1199
BseCI ATCGAT 1 cut(s) 1182
BseDI CCNNGG 2 cut(s) 402, 680
BseGI GGATG 4 cut(s) 52, 73, 676, 1009
BseLI CCNNNNNNNGG 5 cut(s) 409, 571, 681, 872, 1213
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 7 cut(s) 48, 150, 159, 168, 846, 897, 1122
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 4 cut(s) 947, 1159, 1240, 1288
BshFI GGCC 2 cut(s) 401, 749
BshVI ATCGAT 1 cut(s) 1182
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 1096
BslFI GGGAC 2 cut(s) 1112, 1276
BslI CCNNNNNNNGG 5 cut(s) 409, 571, 681, 872, 1213
BsmAI GTCTC 4 cut(s) 107, 230, 602, 1290
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 1112, 1276
BsnI GGCC 2 cut(s) 401, 749
BsoBI CYCGRG 1 cut(s) 227
Bsp13I TCCGGA 1 cut(s) 1095
Bsp1407I TGTACA 1 cut(s) 600
BspACI CCGC 2 cut(s) 750, 791
BspANI GGCC 2 cut(s) 401, 749
BspCNI CTCAG 7 cut(s) 49, 149, 160, 169, 847, 898, 1123
BspDI ATCGAT 1 cut(s) 1182
BspEI TCCGGA 1 cut(s) 1095
BspLI GGNNCC 3 cut(s) 7, 165, 797
BspPI GGATC 6 cut(s) 113, 208, 352, 692, 896, 1001
BspQI GCTCTTC 1 cut(s) 45
BspTI CTTAAG 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 924
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 402, 680
BssNAI GTATAC 1 cut(s) 809
BssT1I CCWWGG 1 cut(s) 680
Bst1107I GTATAC 1 cut(s) 809
Bst2UI CCWGG 2 cut(s) 404, 1199
Bst4CI ACNGT 2 cut(s) 208, 305
Bst6I CTCTTC 3 cut(s) 45, 402, 974
BstAFI CTTAAG 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 600
BstDEI CTNAG 7 cut(s) 57, 136, 168, 177, 855, 906, 1131
BstEII GGTNACC 1 cut(s) 1304
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 4 cut(s) 52, 73, 676, 1009
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstMAI GTCTC 4 cut(s) 107, 230, 602, 1290
BstMWI GCNNNNNNNGC 2 cut(s) 61, 749
BstNI CCWGG 2 cut(s) 404, 1199
BstNSI RCATGY 1 cut(s) 844
BstPI GGTNACC 1 cut(s) 1304
BstSCI CCNGG 2 cut(s) 402, 1197
BstV1I GCAGC 4 cut(s) 947, 1159, 1240, 1288
BstV2I GAAGAC 2 cut(s) 998, 1038
BstX2I RGATCY 2 cut(s) 213, 909
BstXI CCANNNNNNTGG 2 cut(s) 106, 1301
BstYI RGATCY 2 cut(s) 213, 909
BstZ17I GTATAC 1 cut(s) 809
Bsu15I ATCGAT 1 cut(s) 1182
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 401, 749
BsuTUI ATCGAT 1 cut(s) 1182
BtsCI GGATG 4 cut(s) 52, 73, 676, 1009
BtsIMutI CAGTG 2 cut(s) 310, 743
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 400
ClaI ATCGAT 1 cut(s) 1182
CseI GACGC 1 cut(s) 722
CsiI ACCWGGT 1 cut(s) 1197
Csp6I GTAC 5 cut(s) 40, 274, 540, 601, 1084
CspCI CAANNNNNGTGG 2 cut(s) 503, 538
CviAII CATG 4 cut(s) 160, 688, 841, 1213
CviQI GTAC 5 cut(s) 40, 274, 540, 601, 1084
DdeI CTNAG 7 cut(s) 57, 136, 168, 177, 855, 906, 1131
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 3 cut(s) 45, 402, 974
EarI CTCTTC 3 cut(s) 45, 402, 974
Eco130I CCWWGG 1 cut(s) 680
Eco32I GATATC 1 cut(s) 76
Eco47III AGCGCT 1 cut(s) 132
Eco57I CTGAAG 3 cut(s) 650, 998, 1301
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 1304
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 1304
EcoRII CCWGG 2 cut(s) 402, 1197
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 680
EcoT22I ATGCAT 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 680
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 4 cut(s) 163, 691, 844, 1216
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 2 cut(s) 1112, 1276
FatI CATG 4 cut(s) 159, 687, 840, 1212
FauI CCCGC 1 cut(s) 784
FauNDI CATATG 1 cut(s) 723
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 5 cut(s) 750, 936, 1148, 1254, 1277
FokI GGATG 4 cut(s) 59, 80, 663, 1016
Fsp4HI GCNGC 5 cut(s) 750, 936, 1148, 1254, 1277
FspBI CTAG 2 cut(s) 351, 681
GlaI GCGC 1 cut(s) 132
GluI GCNGC 5 cut(s) 750, 936, 1148, 1254, 1277
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 2 cut(s) 401, 749
HapII CCGG 1 cut(s) 1096
HgaI GACGC 1 cut(s) 722
HhaI GCGC 1 cut(s) 133
Hin1II CATG 4 cut(s) 163, 691, 844, 1216
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HindIII AAGCTT 3 cut(s) 192, 449, 768
HinfI GANTC 6 cut(s) 33, 251, 592, 1092, 1099, 1179
HpaII CCGG 1 cut(s) 1096
HphI GGTGA 2 cut(s) 1213, 1235
Hpy166II GTNNAC 4 cut(s) 603, 809, 1086, 1204
Hpy188I TCNGA 8 cut(s) 10, 46, 281, 357, 387, 856, 978, 1020
Hpy8I GTNNAC 4 cut(s) 603, 809, 1086, 1204
HpyAV CCTTC 3 cut(s) 166, 499, 1233
HpyCH4III ACNGT 2 cut(s) 208, 305
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 7 cut(s) 373, 456, 584, 656, 721, 850, 935
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 749
HpyF3I CTNAG 7 cut(s) 57, 136, 168, 177, 855, 906, 1131
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 4 cut(s) 163, 691, 844, 1216
HspAI GCGC 1 cut(s) 131
Kpn2I TCCGGA 1 cut(s) 1095
Ksp22I TGATCA 1 cut(s) 547
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 61, 163, 1216
Lsp1109I GCAGC 4 cut(s) 947, 1159, 1240, 1288
LweI GCATC 3 cut(s) 255, 708, 837
MabI ACCWGGT 1 cut(s) 1197
MaeI CTAG 2 cut(s) 351, 681
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 4 cut(s) 289, 983, 1223, 1304
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 2 cut(s) 213, 909
MnlI CCTC 9 cut(s) 16, 52, 225, 403, 417, 568, 739, 795, 850
Mph1103I ATGCAT 1 cut(s) 723
MroI TCCGGA 1 cut(s) 1095
MroXI GAANNNNTTC 2 cut(s) 153, 972
MseI TTAA 6 cut(s) 189, 447, 774, 861, 1068, 1122
MslI CAYNNNNRTG 1 cut(s) 845
MspA1I CMGCKG 2 cut(s) 287, 1279
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 1 cut(s) 1096
MspR9I CCNGG 2 cut(s) 404, 1199
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 2 cut(s) 404, 1199
MwoI GCNNNNNNNGC 2 cut(s) 61, 749
NdeI CATATG 1 cut(s) 723
NlaIII CATG 4 cut(s) 163, 691, 844, 1216
NlaIV GGNNCC 3 cut(s) 7, 165, 797
NmuCI GTSAC 2 cut(s) 289, 1223
NsiI ATGCAT 1 cut(s) 723
NspI RCATGY 1 cut(s) 844
PciSI GCTCTTC 1 cut(s) 45
PdmI GAANNNNTTC 2 cut(s) 153, 972
PfeI GAWTC 6 cut(s) 33, 251, 592, 1092, 1099, 1179
PflMI CCANNNNNTGG 3 cut(s) 571, 872, 1213
PkrI GCNGC 5 cut(s) 751, 937, 1149, 1255, 1278
Psp6I CCWGG 2 cut(s) 402, 1197
PspEI GGTNACC 1 cut(s) 1304
PspGI CCWGG 2 cut(s) 402, 1197
PspN4I GGNNCC 3 cut(s) 7, 165, 797
PspPI GGNCC 1 cut(s) 400
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
PsuI RGATCY 2 cut(s) 213, 909
PvuII CAGCTG 2 cut(s) 287, 1279
RsaI GTAC 5 cut(s) 41, 275, 541, 602, 1085
RsaNI GTAC 5 cut(s) 40, 274, 540, 601, 1084
RseI CAYNNNNRTG 1 cut(s) 845
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 6 cut(s) 189, 447, 774, 861, 1068, 1122
SatI GCNGC 5 cut(s) 750, 936, 1148, 1254, 1277
Sau96I GGNCC 1 cut(s) 400
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 404, 1199
SexAI ACCWGGT 1 cut(s) 1197
SfaNI GCATC 3 cut(s) 255, 708, 837
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SsiI CCGC 2 cut(s) 750, 791
SspI AATATT 2 cut(s) 824, 1048
SspMI CTAG 2 cut(s) 351, 681
StyD4I CCNGG 2 cut(s) 402, 1197
StyI CCWWGG 1 cut(s) 680
TaaI ACNGT 2 cut(s) 208, 305
TaiI ACGT 1 cut(s) 275
TaqI TCGA 3 cut(s) 36, 78, 1182
TatI WGTACW 2 cut(s) 39, 600
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 6 cut(s) 33, 251, 592, 1092, 1099, 1179
Tru1I TTAA 6 cut(s) 189, 447, 774, 861, 1068, 1122
Tru9I TTAA 6 cut(s) 189, 447, 774, 861, 1068, 1122
TscAI CASTG 2 cut(s) 310, 743
TseFI GTSAC 2 cut(s) 289, 1223
TseI GCWGC 4 cut(s) 935, 1147, 1253, 1276
Tsp45I GTSAC 2 cut(s) 289, 1223
TspDTI ATGAA 5 cut(s) 63, 243, 801, 1003, 1096
TspGWI ACGGA 2 cut(s) 45, 310
TspRI CASTG 2 cut(s) 310, 743
Van91I CCANNNNNTGG 3 cut(s) 571, 872, 1213
Vha464I CTTAAG 1 cut(s) 446
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 2 cut(s) 459, 972
XceI RCATGY 1 cut(s) 844
XmaJI CCTAGG 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 808
XmnI GAANNNNTTC 2 cut(s) 153, 972
XspI CTAG 2 cut(s) 351, 681
ZrmI AGTACT 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.