Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Forward (+)

45792649 .. 45793892

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0284900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGAAGTTTTCTAAGTTTGTTGGAGTTTTTGCTGTGATGCTTGTAGTGGTGGTAGCCATAGCCGAGTGTAGGAAGCTTGAGAAAGAAACGTTTTCGGAAGGTGGTGTTGGAGGTGGCGCAGGAGGTGGTGCAGGTGGAGGCTTTGGCGGTGGTAAAGGTGGCGGCGTTGGAGTAGGAGGTGGAGTTGGTGGTGGAGGAGGAGCGGGTGGTGGTGCAGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGTTGGAGGAGGAAGCGGTGGAGGTGTTGGCGGAGGAAGCGGTGGGGGCGGAGGTGTTGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGCTGGGGGAGGAGTTGGTGGAGGAAGTGGTAAAGGTGGAGGTGTTGGTGGAGGCTCCGGAGGAGGAGTTGGTGGAGGAAGCGGGGCTGGTGGAGGCTTTGGGGGTGGTAAAGGTGGTGGTGCTGGGGGAGGAGTTGGTGGAGGAAGCGGTGGTGGCGGAGGTGTTGGTGGAGGCTCTGGAGGTGGTGTTGGGGGAGGAGCGGGTGGCGGAGGCAGTGTCGGTGGAGGTGCTGGGGGCGGTTTTGGAGGAGGAGCCGGTGGCGGTGCTGGTGGAGGTGCTGGTGGAGGATTCGGAGGAGGCGGTGGAGCTGGTGGTGGTGGGGGAATTGGTGGTGGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

227

Amino Acids

16.86

Weight (kDa)

9.92

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	125, 209
Acc36I	ACCTGC	2 cut(s)	125, 209
AccBSI	CCGCTC	2 cut(s)	206, 542
AccIII	TCCGGA	1 cut(s)	398
AclI	AACGTT	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	72
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	2 cut(s)	79, 650
AluI	AGCT	2 cut(s)	79, 650
Aor13HI	TCCGGA	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	122
BfuAI	ACCTGC	2 cut(s)	125, 209
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	397, 595
BmsI	GCATC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	8 cut(s)	171, 201, 393, 423, 513, 543, 543, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	596
BseAI	TCCGGA	1 cut(s)	398
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseYI	CCCAGC	3 cut(s)	344, 464, 572
BsgI	GTGCAG	2 cut(s)	153, 237
BsiSI	CCGG	2 cut(s)	399, 597
BslI	CCNNNNNNNGG	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	398
BspEI	TCCGGA	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	397, 595
BspMI	ACCTGC	2 cut(s)	125, 209
BsrBI	CCGCTC	2 cut(s)	206, 542
BsrFI	RCCGGY	1 cut(s)	596
BssAI	RCCGGY	1 cut(s)	596
BstDEI	CTNAG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	3 cut(s)	288, 297, 495
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	562
BveI	ACCTGC	2 cut(s)	125, 209
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	596
DdeI	CTNAG	1 cut(s)	15
EciI	GGCGGA	4 cut(s)	297, 315, 513, 564
FaiI	YATR	1 cut(s)	62
FauI	CCCGC	3 cut(s)	199, 416, 535
Fnu4HI	GCNGC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	166
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	166
GsaI	CCCAGC	3 cut(s)	348, 468, 576
GsuI	CTGGAG	1 cut(s)	540
HapII	CCGG	2 cut(s)	399, 597
HhaI	GCGC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	630
HpaII	CCGG	2 cut(s)	399, 597
Hpy188I	TCNGA	2 cut(s)	100, 635
Hpy188III	TCNNGA	2 cut(s)	399, 519
HpyAV	CCTTC	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	134, 218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	288, 297, 495
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	92
HspAI	GCGC	1 cut(s)	120
Kpn2I	TCCGGA	1 cut(s)	398
LmnI	GCTCC	5 cut(s)	203, 401, 539, 593, 647
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	1 cut(s)	92
MbiI	CCGCTC	2 cut(s)	206, 542
MluCI	AATT	1 cut(s)	666
MmeI	TCCRAC	4 cut(s)	4, 91, 151, 235
MroI	TCCGGA	1 cut(s)	398
MseI	TTAA	1 cut(s)	682
MspI	CCGG	2 cut(s)	399, 597
MwoI	GCNNNNNNNGC	3 cut(s)	288, 297, 495
NlaIV	GGNNCC	2 cut(s)	397, 595
NmeAIII	GCCGAG	1 cut(s)	91
PaqCI	CACCTGC	2 cut(s)	125, 209
PfeI	GAWTC	1 cut(s)	630
PkrI	GCNGC	1 cut(s)	167
Psp1406I	AACGTT	1 cut(s)	92
PspFI	CCCAGC	3 cut(s)	344, 464, 572
PspN4I	GGNNCC	2 cut(s)	397, 595
SaqAI	TTAA	1 cut(s)	682
SatI	GCNGC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	666
TaiI	ACGT	1 cut(s)	95
TasI	AATT	1 cut(s)	666
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	630
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TscAI	CASTG	1 cut(s)	562
TspRI	CASTG	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.