Rroxscaffold_5G00376660

Cop9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
57322698 .. 57326820
4123 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00376660.1

Sequence Viewer

Length: 1314 bp
ATGGGTTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGACGAAGAGCCTGAGGAGCAGGACGTTGATATTGAGAACCAGTATTACAACTCCAAAGGTTTGGTTGAGACTGATCCAGAAGGAGCGCTTTCAGGATTTGAAGAAGTAATTCGCATGGAGCCTGACAAGGCTGAGTGGGGATTTAAATCTTTGAAGCAAACTGTGAAGATCTATTACCGTCTCAGGAGGTATAAAGAGATGATGGATTCATACAGGGAGATGTTGACATATATCAAATCAGCTGTAACACGGAATTACAGTGAAAAATGTATAAATAACATTATGGATTTTGTGTCCGGGTCAGCTAGTCAGAACTCTGGTCTCCTGCAAGATTTTTATCAGACCACTCTAAAGGCCCTTGAAGAGGCAAAGAATGAGAGGCTTTGGTTCAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGAGTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGATCAAAAGAAAGGAAGTCAACTTTTGGAGGTTTATGCAATTGAGATTCAAATCAATTATACCAAAAAAGCTCTTGCAATCAAGTCAGCAATACCTCATCCTAGGATCATGGGAATAATTCGTGAGTGTGGGGGTAAGATGCATATGACAGAGCGGCAGTGGGCAGAGGCCGCTACAGATTTTTTTGAAGCTTTCAAGAACTATGATGAAGCGGGGAACCAGAGGCGTATACAATGCTTGAAATATTTAGTTCTGGCTAATATGCTGATGCAGTCCGAGGTTAATCCATTTGATGGTCAAGAAGCCAAGCCGTATAAAAATGATCCTGAGATCTTGGCAATGACAAATCTGGTAGCAGCATATCAACGAAATGAGATATTGGAGTTTGAAAAAAATTCTGAAGGTGTAGTTATTGTACCTAATATGAGTAATAGGAAGACAATTATGGATGATCCATTCATTCGAAACTATATTGAAGATCTGTTGAAGAATATTAGAACACAAGTGCTGCTTAAACTAATCAAGCCGTACACACGAATCCGAATTCCCTTCATATCAAAGGAACTTAATGTCCCTGAGAAAGATGTTGAGCAGCTCTTGGTTTCACTAATTTTAGATAACAAAATCGATGGACATATTGATCAGGTGAACCAGCTCATGGAGCGCGGTGACAGGTCGAAGGGAAGGAAGAAGTATGCTGCCGTAGATAAATGGAACACACAACTGAAGTCTCTTTCTCAAACTATTGATGTCGCTGCTCATCTGTGA

Protein Analysis

437

Amino Acids

50.84

Weight (kDa)

5.51

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 325 - 403 2.9e-23 PCI domain
COPS2_C PF25983 412 - 431 2.3e-09 COP9 signalosome complex subunit 2, C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 839, 1204
AccBSI CCGCTC 1 cut(s) 700
AccI GTMKAC 1 cut(s) 775
AccII CGCG 1 cut(s) 1212
AciI CCGC 4 cut(s) 700, 717, 758, 1212
AclWI GGATC 4 cut(s) 113, 659, 863, 992
AcsI RAATTY 3 cut(s) 459, 940, 1089
AcuI CTGAAG 2 cut(s) 966, 1292
AfaI GTAC 4 cut(s) 41, 541, 963, 1076
AfeI AGCGCT 1 cut(s) 132
AfiI CCNNNNNNNGG 3 cut(s) 409, 839, 1204
AflII CTTAAG 1 cut(s) 446
AloI GAACNNNNNNTCC 2 cut(s) 1101, 1133
AluBI AGCT 7 cut(s) 287, 350, 451, 617, 737, 1141, 1201
AluI AGCT 7 cut(s) 287, 350, 451, 617, 737, 1141, 1201
Alw26I GTCTC 4 cut(s) 107, 230, 371, 1281
AlwI GGATC 4 cut(s) 113, 659, 863, 992
Aor51HI AGCGCT 1 cut(s) 132
AoxI GGCC 2 cut(s) 399, 714
ApeKI GCWGC 5 cut(s) 902, 1054, 1138, 1244, 1301
ApoI RAATTY 3 cut(s) 459, 940, 1089
Asp700I GAANNNNTTC 1 cut(s) 153
AspA2I CCTAGG 1 cut(s) 647
AspLEI GCGC 2 cut(s) 133, 1212
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 1204, 1226
AsuII TTCGAA 1 cut(s) 1009
AvrII CCTAGG 1 cut(s) 647
AxyI CCTNAGG 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbsI GAAGAC 1 cut(s) 989
BbvI GCAGC 5 cut(s) 914, 1041, 1150, 1231, 1288
BccI CCATC 4 cut(s) 241, 530, 833, 1169
BceAI ACGGC 3 cut(s) 841, 1057, 1232
BclI TGATCA 2 cut(s) 547, 1186
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 4 cut(s) 107, 230, 371, 1281
BfaI CTAG 2 cut(s) 351, 648
BfmI CTRYAG 1 cut(s) 720
BfoI RGCGCY 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 446
BglII AGATCT 3 cut(s) 213, 876, 1024
BisI GCNGC 7 cut(s) 701, 717, 903, 1055, 1139, 1245, 1302
BlnI CCTAGG 1 cut(s) 647
BlsI GCNGC 7 cut(s) 702, 718, 904, 1056, 1140, 1246, 1303
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 3 cut(s) 7, 165, 764
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 2 cut(s) 675, 804
BpiI GAAGAC 1 cut(s) 989
Bpu14I TTCGAA 1 cut(s) 1009
BpuMI CCSGG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 1173
BsaBI GATNNNNATC 3 cut(s) 190, 381, 596
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 647, 822
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 839, 1204
Bse1I ACTGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 891
Bse8I GATNNNNATC 3 cut(s) 190, 381, 596
BseCI ATCGAT 1 cut(s) 1173
BseDI CCNNGG 2 cut(s) 647, 822
BseGI GGATG 2 cut(s) 643, 1000
BseJI GATNNNNATC 3 cut(s) 190, 381, 596
BseLI CCNNNNNNNGG 3 cut(s) 409, 839, 1204
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 5 cut(s) 48, 168, 241, 864, 1113
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 5 cut(s) 914, 1041, 1150, 1231, 1288
Bsh1236I CGCG 1 cut(s) 1212
BshFI GGCC 2 cut(s) 401, 716
BshVI ATCGAT 1 cut(s) 1173
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 1 cut(s) 1103
BslI CCNNNNNNNGG 3 cut(s) 409, 839, 1204
BsmAI GTCTC 4 cut(s) 107, 230, 371, 1281
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 1103
BsnI GGCC 2 cut(s) 401, 716
Bso31I GGTCTC 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 1009
Bsp143I GATC 9 cut(s) 118, 213, 547, 651, 868, 876, 997, 1024, 1186
BspACI CCGC 4 cut(s) 700, 717, 758, 1212
BspANI GGCC 2 cut(s) 401, 716
BspCNI CTCAG 5 cut(s) 49, 169, 240, 865, 1114
BspDI ATCGAT 1 cut(s) 1173
BspFNI CGCG 1 cut(s) 1212
BspLI GGNNCC 3 cut(s) 7, 165, 764
BspPI GGATC 4 cut(s) 113, 659, 863, 992
BspQI GCTCTTC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 1009
BspTI CTTAAG 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 700
BsrDI GCAATG 1 cut(s) 891
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 647, 822
BssMI GATC 9 cut(s) 118, 213, 547, 651, 868, 876, 997, 1024, 1186
BssNAI GTATAC 1 cut(s) 776
BssT1I CCWWGG 1 cut(s) 647
Bst1107I GTATAC 1 cut(s) 776
Bst4CI ACNGT 3 cut(s) 208, 224, 305
Bst6I CTCTTC 2 cut(s) 45, 402
BstAFI CTTAAG 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 1009
BstDEI CTNAG 5 cut(s) 57, 177, 227, 873, 1122
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 643, 1000
BstFNI CGCG 1 cut(s) 1212
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 2 cut(s) 133, 1212
BstKTI GATC 9 cut(s) 121, 216, 550, 654, 871, 879, 1000, 1027, 1189
BstMAI GTCTC 4 cut(s) 107, 230, 371, 1281
BstMBI GATC 9 cut(s) 118, 213, 547, 651, 868, 876, 997, 1024, 1186
BstMWI GCNNNNNNNGC 3 cut(s) 61, 716, 1207
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 720
BstUI CGCG 1 cut(s) 1212
BstV1I GCAGC 5 cut(s) 914, 1041, 1150, 1231, 1288
BstV2I GAAGAC 1 cut(s) 989
BstX2I RGATCY 3 cut(s) 213, 876, 1024
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 3 cut(s) 213, 876, 1024
BstZ17I GTATAC 1 cut(s) 776
Bsu15I ATCGAT 1 cut(s) 1173
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 401, 716
BsuTUI ATCGAT 1 cut(s) 1173
BtsCI GGATG 2 cut(s) 643, 1000
BtsI GCAGTG 1 cut(s) 710
BtsIMutI CAGTG 2 cut(s) 310, 710
CfoI GCGC 2 cut(s) 133, 1212
Cfr13I GGNCC 1 cut(s) 400
ClaI ATCGAT 1 cut(s) 1173
Csp6I GTAC 4 cut(s) 40, 540, 962, 1075
CspCI CAANNNNNGTGG 2 cut(s) 503, 538
CviAII CATG 3 cut(s) 160, 655, 1204
CviQI GTAC 4 cut(s) 40, 540, 962, 1075
DdeI CTNAG 5 cut(s) 57, 177, 227, 873, 1122
DpnI GATC 9 cut(s) 120, 215, 549, 653, 870, 878, 999, 1026, 1188
DpnII GATC 9 cut(s) 118, 213, 547, 651, 868, 876, 997, 1024, 1186
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 45, 402
EarI CTCTTC 2 cut(s) 45, 402
Eco130I CCWWGG 1 cut(s) 647
Eco31I GGTCTC 1 cut(s) 371
Eco47III AGCGCT 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 966, 1292
Eco81I CCTNAGG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 1089
EcoT14I CCWWGG 1 cut(s) 647
EcoT22I ATGCAT 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 647
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 3 cut(s) 163, 658, 1207
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 1041, 1073
FaqI GGGAC 1 cut(s) 1103
FatI CATG 3 cut(s) 159, 654, 1203
FauI CCCGC 1 cut(s) 751
FauNDI CATATG 1 cut(s) 690
FbaI TGATCA 2 cut(s) 547, 1186
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 7 cut(s) 701, 717, 903, 1055, 1139, 1245, 1302
FokI GGATG 2 cut(s) 630, 1007
Fsp4HI GCNGC 7 cut(s) 701, 717, 903, 1055, 1139, 1245, 1302
FspBI CTAG 2 cut(s) 351, 648
GlaI GCGC 2 cut(s) 132, 1211
GluI GCNGC 7 cut(s) 701, 717, 903, 1055, 1139, 1245, 1302
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 2 cut(s) 401, 716
HapII CCGG 1 cut(s) 342
HhaI GCGC 2 cut(s) 133, 1212
Hin1II CATG 3 cut(s) 163, 658, 1207
Hin6I GCGC 2 cut(s) 131, 1210
HinP1I GCGC 2 cut(s) 131, 1210
HincII GTYRAC 2 cut(s) 270, 566
HindII GTYRAC 2 cut(s) 270, 566
HindIII AAGCTT 2 cut(s) 449, 735
HinfI GANTC 4 cut(s) 33, 251, 592, 1083
HpaII CCGG 1 cut(s) 342
HphI GGTGA 2 cut(s) 1204, 1226
Hpy166II GTNNAC 5 cut(s) 270, 566, 776, 1077, 1195
Hpy188I TCNGA 7 cut(s) 10, 46, 357, 387, 823, 946, 1088
Hpy188III TCNNGA 8 cut(s) 122, 138, 229, 436, 668, 742, 845, 872
Hpy8I GTNNAC 5 cut(s) 270, 566, 776, 1077, 1195
HpyAV CCTTC 6 cut(s) 119, 499, 941, 1105, 1219, 1224
HpyCH4III ACNGT 3 cut(s) 208, 224, 305
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 6 cut(s) 373, 456, 584, 623, 688, 817
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 716, 1207
HpyF3I CTNAG 5 cut(s) 57, 177, 227, 873, 1122
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 3 cut(s) 163, 658, 1207
HspAI GCGC 2 cut(s) 131, 1210
Ksp22I TGATCA 2 cut(s) 547, 1186
Kzo9I GATC 9 cut(s) 118, 213, 547, 651, 868, 876, 997, 1024, 1186
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 4 cut(s) 61, 128, 163, 1207
Lsp1109I GCAGC 5 cut(s) 914, 1041, 1150, 1231, 1288
LweI GCATC 2 cut(s) 675, 804
MaeI CTAG 2 cut(s) 351, 648
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 289, 1214
MalI GATC 9 cut(s) 120, 215, 549, 653, 870, 878, 999, 1026, 1188
MbiI CCGCTC 1 cut(s) 700
MboI GATC 9 cut(s) 118, 213, 547, 651, 868, 876, 997, 1024, 1186
MboII GAAGA 9 cut(s) 62, 158, 223, 419, 545, 994, 1034, 1045, 1246
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 3 cut(s) 213, 876, 1024
Mph1103I ATGCAT 1 cut(s) 690
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 5 cut(s) 189, 447, 828, 1059, 1113
MspA1I CMGCKG 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 343
MunI CAATTG 1 cut(s) 585
MvnI CGCG 1 cut(s) 1212
MwoI GCNNNNNNNGC 3 cut(s) 61, 716, 1207
NciI CCSGG 1 cut(s) 343
NdeI CATATG 1 cut(s) 690
NdeII GATC 9 cut(s) 118, 213, 547, 651, 868, 876, 997, 1024, 1186
NlaIII CATG 3 cut(s) 163, 658, 1207
NlaIV GGNNCC 3 cut(s) 7, 165, 764
NmuCI GTSAC 1 cut(s) 1214
NsiI ATGCAT 1 cut(s) 690
NspV TTCGAA 1 cut(s) 1009
PciSI GCTCTTC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 4 cut(s) 33, 251, 592, 1083
PflMI CCANNNNNTGG 2 cut(s) 839, 1204
PkrI GCNGC 7 cut(s) 702, 718, 904, 1056, 1140, 1246, 1303
PspN4I GGNNCC 3 cut(s) 7, 165, 764
PspPI GGNCC 1 cut(s) 400
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
PsuI RGATCY 3 cut(s) 213, 876, 1024
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 4 cut(s) 41, 541, 963, 1076
RsaNI GTAC 4 cut(s) 40, 540, 962, 1075
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 5 cut(s) 189, 447, 828, 1059, 1113
SatI GCNGC 7 cut(s) 701, 717, 903, 1055, 1139, 1245, 1302
Sau3AI GATC 9 cut(s) 118, 213, 547, 651, 868, 876, 997, 1024, 1186
Sau96I GGNCC 1 cut(s) 400
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 343
SfaNI GCATC 2 cut(s) 675, 804
SfcI CTRYAG 1 cut(s) 720
SfuI TTCGAA 1 cut(s) 1009
SmiI ATTTAAAT 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SsiI CCGC 4 cut(s) 700, 717, 758, 1212
SspI AATATT 2 cut(s) 791, 1039
SspMI CTAG 2 cut(s) 351, 648
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 647
SwaI ATTTAAAT 1 cut(s) 190
TaaI ACNGT 3 cut(s) 208, 224, 305
TaiI ACGT 1 cut(s) 72
TaqI TCGA 4 cut(s) 36, 1009, 1173, 1223
TatI WGTACW 1 cut(s) 39
TauI GCSGC 2 cut(s) 703, 719
TfiI GAWTC 4 cut(s) 33, 251, 592, 1083
Tru1I TTAA 5 cut(s) 189, 447, 828, 1059, 1113
Tru9I TTAA 5 cut(s) 189, 447, 828, 1059, 1113
TscAI CASTG 2 cut(s) 310, 710
TseFI GTSAC 1 cut(s) 1214
TseI GCWGC 5 cut(s) 902, 1054, 1138, 1244, 1301
Tsp45I GTSAC 1 cut(s) 1214
TspDTI ATGAA 4 cut(s) 243, 768, 994, 1087
TspGWI ACGGA 2 cut(s) 45, 310
TspRI CASTG 2 cut(s) 310, 710
Van91I CCANNNNNTGG 2 cut(s) 839, 1204
Vha464I CTTAAG 1 cut(s) 446
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 3 cut(s) 459, 940, 1089
XmaJI CCTAGG 1 cut(s) 647
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 351, 648
ZrmI AGTACT 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.