Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009623.1

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Reverse (-)

5506 .. 6394

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009623.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgctgatgcagtccgaggttaatccatttgatggtcaagaagcaaagccgtataaaaatgatcctgagatcttggcaatgacaaatctggtagcagcatatcaacgaaatgagatattggagttcgaaaaaattctgaagagtaataggaagacaattatggatgatccattcattcgaaactatattgaagatctgttgaagaatattagaacacaagtgctgcttaaactaatcaagccgtacacacgaatccgaattcccttcatatcaaaggaacttaatgtccctgagaaagatgttgagcagctcttggtttcactaattttagataacaaaatcgatggacatattgatcaggtgaaccagctcatggagcgcggtgacaggtcgaagggaaggaagaagtatgctgccgtagataaatggaacacacagctgaagtctctttctcaaactattggtaaccgagtatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

159

Amino Acids

18.62

Weight (kDa)

9.2

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	32, 373
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	2 cut(s)	56, 161
AcsI	RAATTY	2 cut(s)	132, 258
AcuI	CTGAAG	2 cut(s)	158, 461
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	32, 373
AgsI	TTSAA	2 cut(s)	191, 202
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	3 cut(s)	310, 370, 439
AluI	AGCT	3 cut(s)	310, 370, 439
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	56, 161
ApeKI	GCWGC	4 cut(s)	95, 223, 307, 413
ApoI	RAATTY	2 cut(s)	132, 258
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	373, 395
AsuII	TTCGAA	2 cut(s)	126, 178
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	4 cut(s)	107, 210, 319, 400
BccI	CCATC	2 cut(s)	26, 338
BceAI	ACGGC	3 cut(s)	34, 226, 401
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	450
BglII	AGATCT	2 cut(s)	69, 193
BisI	GCNGC	4 cut(s)	96, 224, 308, 414
BlsI	GCNGC	4 cut(s)	97, 225, 309, 415
BpiI	GAAGAC	1 cut(s)	158
Bpu14I	TTCGAA	2 cut(s)	126, 178
Bsa29I	ATCGAT	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 373
Bse3DI	GCAATG	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	32, 373
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	57, 282
BseXI	GCAGC	4 cut(s)	107, 210, 319, 400
Bsh1236I	CGCG	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	32, 373
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	272
Bsp119I	TTCGAA	2 cut(s)	126, 178
Bsp143I	GATC	5 cut(s)	61, 69, 166, 193, 355
BspACI	CCGC	1 cut(s)	381
BspCNI	CTCAG	2 cut(s)	58, 283
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	381
BspPI	GGATC	2 cut(s)	56, 161
BspT104I	TTCGAA	2 cut(s)	126, 178
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	5 cut(s)	61, 69, 166, 193, 355
Bst6I	CTCTTC	1 cut(s)	134
BstBI	TTCGAA	2 cut(s)	126, 178
BstDEI	CTNAG	2 cut(s)	66, 291
BstEII	GGTNACC	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	5 cut(s)	64, 72, 169, 196, 358
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	5 cut(s)	61, 69, 166, 193, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstPI	GGTNACC	1 cut(s)	464
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	4 cut(s)	107, 210, 319, 400
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	69, 193
BstYI	RGATCY	2 cut(s)	69, 193
Bsu15I	ATCGAT	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	381
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	5 cut(s)	49, 241, 310, 370, 439
CviKI_1	RGCY	5 cut(s)	49, 241, 310, 370, 439
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	66, 291
DpnI	GATC	5 cut(s)	63, 71, 168, 195, 357
DpnII	GATC	5 cut(s)	61, 69, 166, 193, 355
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	158, 461
Eco91I	GGTNACC	1 cut(s)	464
EcoO65I	GGTNACC	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	258
FaeI	CATG	1 cut(s)	376
FaiI	YATR	9 cut(s)	54, 100, 161, 186, 269, 351, 374, 411, 475
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	96, 224, 308, 414
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	4 cut(s)	96, 224, 308, 414
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	4 cut(s)	96, 224, 308, 414
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	252
HphI	GGTGA	2 cut(s)	373, 395
Hpy166II	GTNNAC	2 cut(s)	246, 364
Hpy188I	TCNGA	3 cut(s)	16, 138, 257
Hpy188III	TCNNGA	2 cut(s)	38, 65
Hpy8I	GTNNAC	2 cut(s)	246, 364
HpyAV	CCTTC	3 cut(s)	274, 388, 393
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	2 cut(s)	66, 291
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	5 cut(s)	61, 69, 166, 193, 355
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	6 cut(s)	74, 78, 303, 344, 373, 380
Lsp1109I	GCAGC	4 cut(s)	107, 210, 319, 400
MaeIII	GTNAC	2 cut(s)	383, 464
MalI	GATC	5 cut(s)	63, 71, 168, 195, 357
MboI	GATC	5 cut(s)	61, 69, 166, 193, 355
MboII	GAAGA	5 cut(s)	151, 163, 203, 214, 415
MflI	RGATCY	2 cut(s)	69, 193
MluCI	AATT	4 cut(s)	132, 156, 258, 324
MnlI	CCTC	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	3 cut(s)	21, 228, 282
MspA1I	CMGCKG	1 cut(s)	439
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	5 cut(s)	61, 69, 166, 193, 355
NlaIII	CATG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	383
NspV	TTCGAA	2 cut(s)	126, 178
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	252
PflMI	CCANNNNNTGG	2 cut(s)	32, 373
PkrI	GCNGC	4 cut(s)	97, 225, 309, 415
PspEI	GGTNACC	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	69, 193
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	21, 228, 282
SatI	GCNGC	4 cut(s)	96, 224, 308, 414
Sau3AI	GATC	5 cut(s)	61, 69, 166, 193, 355
SetI	ASST	6 cut(s)	21, 312, 363, 372, 392, 441
SfuI	TTCGAA	2 cut(s)	126, 178
Sse9I	AATT	4 cut(s)	132, 156, 258, 324
SsiI	CCGC	1 cut(s)	381
SspI	AATATT	1 cut(s)	208
TaqI	TCGA	4 cut(s)	126, 178, 342, 392
TasI	AATT	4 cut(s)	132, 156, 258, 324
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	3 cut(s)	21, 228, 282
Tru9I	TTAA	3 cut(s)	21, 228, 282
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	4 cut(s)	95, 223, 307, 413
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	163, 256
Van91I	CCANNNNNTGG	2 cut(s)	32, 373
XapI	RAATTY	2 cut(s)	132, 258
XmnI	GAANNNNTTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.