Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Reverse (-)

62012177 .. 62016349

Gene Structure 4173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG363400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGTTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGACGAAGAGCCTGAGGAGCAGGACGTTGATATTGAGAACCAGTATTACAACTCCAAAGGTTTGGTTGAGACTGATCCAGAAGGAGCGCTTTCAGGATTTGAAGAAGTAATTCGCATGGAGCCTGACAAGGCTGAGTGGGGATTCAAATCTTTGAAGCAAACTGTGAAGATCTATTACCGTCTCAGGAGGTATAAAGAGATGATGGATTCATACAGGGAGATGTTGACATATATCAAATCAGCTGTAACACGGAATTACAGCGAAAAATGTATAAATAACATTATGGATTTTGTGTCCGGGTCAGCTAGTCAGAACTCTGGTCTCCTGCAAGATTTTTATCAGACCACTCTAAAGGCCCTTGAAGAGGCAAAGAATGAGAGGCTTTGGTTCAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGAGTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGATCAAAAGAAAGGAAGTCAACTTTTGGAGGTTTATGCAATTGAGATTCAAATGTACACTGAGACTAAAAATAACAAAAAGCTAAAGCAATTATACCAAAAAGCTCTTGCAATCAAGTCAGCAATACCTCATCCTAGGATCATGGGAATAATTCGTGAGTGTGGGGGTAAGATGCATATGACAGAGCGTCAGTGGGCAGAGGCCGCCACAGATTTTTTTGAAGCTTTCAAGAACTATGATGAAGCGGGGAACCAGAGGCGTATACAATGCTTGAAATATTTAGTTCTGGCTAATATGCTGATGCAGTCTGAGGTTAATCCATTTGATGGTCAAGAAGCAAAGCCGTATAAAAATGATCCTGAGATCTTGGCAATGACAAATCTGGTAGCAGCATATCAACGAAATGAGATATTGGAGTTCGAAAAAATTCTGAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

328

Amino Acids

38.38

Weight (kDa)

5.22

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	872
AccI	GTMKAC	1 cut(s)	808
AciI	CCGC	2 cut(s)	750, 791
AclWI	GGATC	3 cut(s)	113, 692, 896
AcsI	RAATTY	2 cut(s)	459, 972
AfaI	GTAC	3 cut(s)	41, 541, 602
AfeI	AGCGCT	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	409, 872
AflII	CTTAAG	1 cut(s)	446
AhdI	GACNNNNNGTC	1 cut(s)	732
AluBI	AGCT	6 cut(s)	287, 350, 451, 628, 650, 770
AluI	AGCT	6 cut(s)	287, 350, 451, 628, 650, 770
Alw26I	GTCTC	4 cut(s)	107, 230, 371, 602
AlwI	GGATC	3 cut(s)	113, 692, 896
Aor51HI	AGCGCT	1 cut(s)	132
AoxI	GGCC	2 cut(s)	399, 747
ApeKI	GCWGC	1 cut(s)	935
ApoI	RAATTY	2 cut(s)	459, 972
Asp700I	GAANNNNTTC	2 cut(s)	153, 972
AspA2I	CCTAGG	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	400
AsuC2I	CCSGG	1 cut(s)	343
AsuII	TTCGAA	1 cut(s)	966
AvrII	CCTAGG	1 cut(s)	680
AxyI	CCTNAGG	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbvI	GCAGC	1 cut(s)	947
BccI	CCATC	3 cut(s)	241, 530, 866
BceAI	ACGGC	1 cut(s)	874
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	4 cut(s)	107, 230, 371, 602
BfaI	CTAG	2 cut(s)	351, 681
BfoI	RGCGCY	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	446
BglII	AGATCT	2 cut(s)	213, 909
BisI	GCNGC	2 cut(s)	750, 936
BlnI	CCTAGG	1 cut(s)	680
BlsI	GCNGC	2 cut(s)	751, 937
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	343
BmeRI	GACNNNNNGTC	1 cut(s)	732
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	3 cut(s)	7, 165, 797
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	2 cut(s)	708, 837
Bpu14I	TTCGAA	1 cut(s)	966
BpuMI	CCSGG	1 cut(s)	343
BsaBI	GATNNNNATC	2 cut(s)	190, 381
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 872
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	924
Bse8I	GATNNNNATC	2 cut(s)	190, 381
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	1 cut(s)	676
BseJI	GATNNNNATC	2 cut(s)	190, 381
BseLI	CCNNNNNNNGG	2 cut(s)	409, 872
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	6 cut(s)	48, 168, 241, 597, 846, 897
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	947
BshFI	GGCC	2 cut(s)	401, 749
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	409, 872
BsmAI	GTCTC	4 cut(s)	107, 230, 371, 602
BsmBI	CGTCTC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	401, 749
Bso31I	GGTCTC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	966
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	6 cut(s)	118, 213, 547, 684, 901, 909
BspACI	CCGC	2 cut(s)	750, 791
BspANI	GGCC	2 cut(s)	401, 749
BspCNI	CTCAG	6 cut(s)	49, 169, 240, 598, 847, 898
BspLI	GGNNCC	3 cut(s)	7, 165, 797
BspPI	GGATC	3 cut(s)	113, 692, 896
BspQI	GCTCTTC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	966
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	6 cut(s)	118, 213, 547, 684, 901, 909
BssNAI	GTATAC	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	680
Bst1107I	GTATAC	1 cut(s)	809
Bst4CI	ACNGT	2 cut(s)	208, 224
Bst6I	CTCTTC	2 cut(s)	45, 402
BstAFI	CTTAAG	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	600
BstBI	TTCGAA	1 cut(s)	966
BstDEI	CTNAG	6 cut(s)	57, 177, 227, 606, 855, 906
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	676
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	6 cut(s)	121, 216, 550, 687, 904, 912
BstMAI	GTCTC	4 cut(s)	107, 230, 371, 602
BstMBI	GATC	6 cut(s)	118, 213, 547, 684, 901, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 749
BstSCI	CCNGG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	947
BstX2I	RGATCY	2 cut(s)	213, 909
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	2 cut(s)	213, 909
BstZ17I	GTATAC	1 cut(s)	809
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	401, 749
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	603, 743
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	400
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	3 cut(s)	40, 540, 601
CspCI	CAANNNNNGTGG	2 cut(s)	503, 538
CviAII	CATG	2 cut(s)	160, 688
CviQI	GTAC	3 cut(s)	40, 540, 601
DdeI	CTNAG	6 cut(s)	57, 177, 227, 606, 855, 906
DpnI	GATC	6 cut(s)	120, 215, 549, 686, 903, 911
DpnII	GATC	6 cut(s)	118, 213, 547, 684, 901, 909
DriI	GACNNNNNGTC	1 cut(s)	732
Eam1104I	CTCTTC	2 cut(s)	45, 402
Eam1105I	GACNNNNNGTC	1 cut(s)	732
EarI	CTCTTC	2 cut(s)	45, 402
Eco130I	CCWWGG	1 cut(s)	680
Eco31I	GGTCTC	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	680
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	163, 691
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	2 cut(s)	159, 687
FauI	CCCGC	1 cut(s)	784
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	808
Fnu4HI	GCNGC	2 cut(s)	750, 936
FokI	GGATG	1 cut(s)	663
Fsp4HI	GCNGC	2 cut(s)	750, 936
FspBI	CTAG	2 cut(s)	351, 681
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	750, 936
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	401, 749
HapII	CCGG	1 cut(s)	342
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	163, 691
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	2 cut(s)	270, 566
HindII	GTYRAC	2 cut(s)	270, 566
HindIII	AAGCTT	2 cut(s)	449, 768
HinfI	GANTC	4 cut(s)	33, 186, 251, 592
HpaII	CCGG	1 cut(s)	342
Hpy166II	GTNNAC	4 cut(s)	270, 566, 603, 809
Hpy188I	TCNGA	6 cut(s)	10, 46, 357, 387, 856, 978
Hpy188III	TCNNGA	8 cut(s)	122, 138, 229, 436, 701, 775, 878, 905
Hpy8I	GTNNAC	4 cut(s)	270, 566, 603, 809
HpyAV	CCTTC	3 cut(s)	119, 499, 973
HpyCH4III	ACNGT	2 cut(s)	208, 224
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	6 cut(s)	373, 456, 584, 656, 721, 850
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 749
HpyF3I	CTNAG	6 cut(s)	57, 177, 227, 606, 855, 906
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	163, 691
HspAI	GCGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	6 cut(s)	118, 213, 547, 684, 901, 909
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	61, 128, 163
Lsp1109I	GCAGC	1 cut(s)	947
LweI	GCATC	2 cut(s)	708, 837
MaeI	CTAG	2 cut(s)	351, 681
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	6 cut(s)	120, 215, 549, 686, 903, 911
MboI	GATC	6 cut(s)	118, 213, 547, 684, 901, 909
MboII	GAAGA	5 cut(s)	62, 158, 223, 419, 545
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	213, 909
MluCI	AATT	7 cut(s)	153, 298, 459, 585, 635, 696, 972
Mph1103I	ATGCAT	1 cut(s)	723
MroXI	GAANNNNTTC	2 cut(s)	153, 972
MseI	TTAA	2 cut(s)	447, 861
MspA1I	CMGCKG	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	343
MunI	CAATTG	1 cut(s)	585
MwoI	GCNNNNNNNGC	2 cut(s)	61, 749
NciI	CCSGG	1 cut(s)	343
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	6 cut(s)	118, 213, 547, 684, 901, 909
NlaIII	CATG	2 cut(s)	163, 691
NlaIV	GGNNCC	3 cut(s)	7, 165, 797
NsiI	ATGCAT	1 cut(s)	723
NspV	TTCGAA	1 cut(s)	966
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	2 cut(s)	153, 972
PfeI	GAWTC	4 cut(s)	33, 186, 251, 592
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	2 cut(s)	751, 937
PspN4I	GGNNCC	3 cut(s)	7, 165, 797
PspPI	GGNCC	1 cut(s)	400
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
PsuI	RGATCY	2 cut(s)	213, 909
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	3 cut(s)	41, 541, 602
RsaNI	GTAC	3 cut(s)	40, 540, 601
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	447, 861
SatI	GCNGC	2 cut(s)	750, 936
Sau3AI	GATC	6 cut(s)	118, 213, 547, 684, 901, 909
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	343
SfaNI	GCATC	2 cut(s)	708, 837
SfuI	TTCGAA	1 cut(s)	966
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	7 cut(s)	153, 298, 459, 585, 635, 696, 972
SsiI	CCGC	2 cut(s)	750, 791
SspI	AATATT	1 cut(s)	824
SspMI	CTAG	2 cut(s)	351, 681
StyD4I	CCNGG	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	208, 224
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	36, 966
TasI	AATT	7 cut(s)	153, 298, 459, 585, 635, 696, 972
TatI	WGTACW	2 cut(s)	39, 600
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	4 cut(s)	33, 186, 251, 592
Tru1I	TTAA	2 cut(s)	447, 861
Tru9I	TTAA	2 cut(s)	447, 861
TscAI	CASTG	2 cut(s)	610, 743
TseI	GCWGC	1 cut(s)	935
TspDTI	ATGAA	2 cut(s)	243, 801
TspGWI	ACGGA	2 cut(s)	45, 310
TspRI	CASTG	2 cut(s)	610, 743
Van91I	CCANNNNNTGG	1 cut(s)	872
Vha464I	CTTAAG	1 cut(s)	446
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	2 cut(s)	459, 972
XmaJI	CCTAGG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	808
XmnI	GAANNNNTTC	2 cut(s)	153, 972
XspI	CTAG	2 cut(s)	351, 681
ZrmI	AGTACT	1 cut(s)	41
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.