Rmu_sc0000333.1_g000008

Cop9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000333.1
Physical Location & Seq
Reverse (-)
78850 .. 86941
8092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000333.1_g000008.1.cds

Sequence Viewer

Length: 1590 bp
atggcttccgatgctgatatggaggattacggattcgagtactcggatgaggagcctgaggaacaggacgttgacatcgagaatcaatattacaactctaaaggtttggttgagactgatccagaaggagcactttcaggatttgaggaagtagttcgcatggagcccgagaaggccgagtggggatttaaagctttgaaacagactgtgaagatctattatcgtctcgggaggtataaagaaatgatggattcgtacagggtgatgttgacatacatcaaatcagctgtgacgcgaaactacagtgagaaatgtataaacaacattatggattttgtttctggatcagcgagtcaaaactttggtctcctgcaagagttttatcagaccactctaaaggcccttgaagaggcaaagaatgagaggctttggttcaagacaaatcttaagctttgcaaaatttggtttgatatgggcgaatatgggagaatgagtaagattctcaaggaactccataagtcttgtcaaaaagaagatggtacagatgatcaaaagaaaggaagtcaacttttggaggtttatgcaattgagattcaaatgtacactgagactaaaaataacaaaaagctcaagcaattataccaaaaagctcttgcgatcaagtctgcaattcctcatcctaggatcatgggaattattcgtgagtgtggcggcaagatgcatatggcagagcgtcagtgggcagaggccgccacagatttttttgaagcttttaagaactatgatgaagctgggaaccagaggcgtattcagtgcttgaaatatttagtcctggctaatatgctgatggagtccgaggttaatccatttgatggtcaagaagcaaagccgtataaaaatgatcctgagatcttggcaatgacaaatctcatagcagcatatcaacgaaatgagatcttagagtttgagaaaattcttaagagtaataggaggacaattatggatgatccattcattcgaaactatattgaagatttgttgaagaatgtcagaactcaagttctgcttaaactaatcaagccgtacacacggatccgaattcctttcatatcaaaggaactcaatgtccctgagaaagatgttgagcagctcttggtttcactaatattggataaccgaatcgatggacatatcgatcaagtgaaccggctcttagagcgtggtgacaggtcaaagggaatgaagaagtatgctgccgtagataaatggaacacgcagctgaggtctctttaccaaacaattgctctgtgcagctccgtccttcccgcaatcaatgttgtccagcccacgccgtccacaccaccaagccatccgacccagcatagccacgacacactgccctacgccgccgcacagatcaccaatacccacgccgctgcgcagaccaaacggaccacaccatcacttagatcatcaggcaccgccatccctgcacaacacaaccaccacttaccatcatctggaaactcgcctcagccacccaaccagaccaagcgaataacctctctccagaactctccgagtgactag

Protein Analysis

529

Amino Acids

60.81

Weight (kDa)

6.86

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1440
AccB1I GGYRCC 1 cut(s) 1478
AccB7I CCANNNNNTGG 2 cut(s) 872, 1520
AccII CGCG 1 cut(s) 295
AciI CCGC 7 cut(s) 711, 750, 1326, 1407, 1410, 1434, 1482
AclWI GGATC 7 cut(s) 113, 352, 692, 896, 1001, 1087, 1100
AcsI RAATTY 3 cut(s) 459, 972, 1098
AfaI GTAC 5 cut(s) 41, 257, 541, 602, 1085
AfiI CCNNNNNNNGG 3 cut(s) 409, 872, 1520
AflII CTTAAG 2 cut(s) 446, 977
AgsI TTSAA 8 cut(s) 199, 407, 436, 596, 767, 820, 1031, 1042
AjnI CCWGG 1 cut(s) 831
AloI GAACNNNNNNTCC 2 cut(s) 1110, 1142
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 5 cut(s) 107, 230, 371, 602, 1290
AlwI GGATC 7 cut(s) 113, 352, 692, 896, 1001, 1087, 1100
Ama87I CYCGRG 2 cut(s) 167, 227
AoxI GGCC 3 cut(s) 174, 399, 747
ApeKI GCWGC 6 cut(s) 935, 1147, 1253, 1276, 1311, 1436
ApoI RAATTY 3 cut(s) 459, 972, 1098
ArsI GACNNNNNNTTYG 2 cut(s) 349, 381
Asp700I GAANNNNTTC 1 cut(s) 153
AspA2I CCTAGG 1 cut(s) 680
AspLEI GCGC 1 cut(s) 1441
AspS9I GGNCC 2 cut(s) 400, 1452
AsuHPI GGTGA 3 cut(s) 274, 1235, 1411
AsuII TTCGAA 1 cut(s) 1018
AvaI CYCGRG 2 cut(s) 167, 227
AvaII GGWCC 1 cut(s) 1452
AvrII CCTAGG 1 cut(s) 680
AxyI CCTNAGG 1 cut(s) 57
BamHI GGATCC 1 cut(s) 1092
BanI GGYRCC 1 cut(s) 1478
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 133
BbvCI CCTCAGC 2 cut(s) 1280, 1533
BbvI GCAGC 6 cut(s) 947, 1159, 1240, 1288, 1323, 1423
BccI CCATC 9 cut(s) 241, 530, 841, 866, 1178, 1377, 1468, 1493, 1522
BceAI ACGGC 4 cut(s) 874, 1066, 1241, 1336
BciT130I CCWGG 1 cut(s) 833
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 5 cut(s) 107, 230, 371, 602, 1290
BfaI CTAG 2 cut(s) 681, 1588
BfmI CTRYAG 1 cut(s) 301
BfrI CTTAAG 2 cut(s) 446, 977
BglII AGATCT 3 cut(s) 213, 909, 954
BlnI CCTAGG 1 cut(s) 680
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 833
Bme18I GGWCC 1 cut(s) 1452
BmeT110I CYCGRG 2 cut(s) 167, 227
BmgT120I GGNCC 2 cut(s) 400, 1452
BmiI GGNNCC 5 cut(s) 54, 165, 797, 1094, 1480
BmrFI CCNGG 1 cut(s) 833
BmsI GCATC 1 cut(s) 708
BpmI CTGGAG 1 cut(s) 1553
Bpu10I CCTNAGC 2 cut(s) 1280, 1533
Bpu14I TTCGAA 1 cut(s) 1018
BpuEI CTTGAG 3 cut(s) 488, 614, 1041
Bsa29I ATCGAT 2 cut(s) 1182, 1194
BsaI GGTCTC 2 cut(s) 371, 1290
BsaJI CCNNGG 2 cut(s) 680, 855
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 872, 1520
Bse118I RCCGGY 1 cut(s) 1206
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 924
BseBI CCWGG 1 cut(s) 833
BseCI ATCGAT 2 cut(s) 1182, 1194
BseDI CCNNGG 2 cut(s) 680, 855
BseGI GGATG 5 cut(s) 52, 676, 1009, 1369, 1485
BseLI CCNNNNNNNGG 3 cut(s) 409, 872, 1520
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 6 cut(s) 48, 597, 897, 1122, 1271, 1547
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 6 cut(s) 947, 1159, 1240, 1288, 1323, 1423
BseYI CCCAGC 2 cut(s) 791, 1377
BsgI GTGCAG 2 cut(s) 1330, 1476
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 3 cut(s) 176, 401, 749
BshNI GGYRCC 1 cut(s) 1478
BshVI ATCGAT 2 cut(s) 1182, 1194
BsiHKAI GWGCWC 1 cut(s) 133
BsiHKCI CYCGRG 2 cut(s) 167, 227
BsiSI CCGG 1 cut(s) 1207
BslFI GGGAC 1 cut(s) 1112
BslI CCNNNNNNNGG 3 cut(s) 409, 872, 1520
BsmAI GTCTC 5 cut(s) 107, 230, 371, 602, 1290
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 1112
BsnI GGCC 3 cut(s) 176, 401, 749
Bso31I GGTCTC 2 cut(s) 371, 1290
BsoBI CYCGRG 2 cut(s) 167, 227
Bsp119I TTCGAA 1 cut(s) 1018
Bsp1286I GDGCHC 2 cut(s) 133, 168
Bsp1407I TGTACA 1 cut(s) 600
BspACI CCGC 7 cut(s) 711, 750, 1326, 1407, 1410, 1434, 1482
BspANI GGCC 3 cut(s) 176, 401, 749
BspCNI CTCAG 6 cut(s) 49, 598, 898, 1123, 1272, 1546
BspDI ATCGAT 2 cut(s) 1182, 1194
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 5 cut(s) 54, 165, 797, 1094, 1480
BspPI GGATC 7 cut(s) 113, 352, 692, 896, 1001, 1087, 1100
BspT104I TTCGAA 1 cut(s) 1018
BspT107I GGYRCC 1 cut(s) 1478
BspTI CTTAAG 2 cut(s) 446, 977
BspTNI GGTCTC 2 cut(s) 371, 1290
BsrDI GCAATG 1 cut(s) 924
BsrFI RCCGGY 1 cut(s) 1206
BsrGI TGTACA 1 cut(s) 600
BssAI RCCGGY 1 cut(s) 1206
BssECI CCNNGG 2 cut(s) 680, 855
BssT1I CCWWGG 1 cut(s) 680
Bst2UI CCWGG 1 cut(s) 833
Bst4CI ACNGT 2 cut(s) 208, 305
Bst6I CTCTTC 1 cut(s) 402
BstAFI CTTAAG 2 cut(s) 446, 977
BstAUI TGTACA 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 1018
BstDEI CTNAG 9 cut(s) 57, 606, 906, 958, 1131, 1213, 1280, 1466, 1533
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 5 cut(s) 52, 676, 1009, 1369, 1485
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 1441
BstMAI GTCTC 5 cut(s) 107, 230, 371, 602, 1290
BstMWI GCNNNNNNNGC 4 cut(s) 11, 749, 1216, 1490
BstNI CCWGG 1 cut(s) 833
BstSCI CCNGG 1 cut(s) 831
BstSFI CTRYAG 1 cut(s) 301
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 6 cut(s) 947, 1159, 1240, 1288, 1323, 1423
BstX2I RGATCY 4 cut(s) 213, 909, 954, 1092
BstYI RGATCY 4 cut(s) 213, 909, 954, 1092
Bsu15I ATCGAT 2 cut(s) 1182, 1194
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 3 cut(s) 176, 401, 749
BsuTUI ATCGAT 2 cut(s) 1182, 1194
BtsCI GGATG 5 cut(s) 52, 676, 1009, 1369, 1485
BtsI GCAGTG 1 cut(s) 1394
BtsIMutI CAGTG 5 cut(s) 310, 603, 743, 818, 1394
CfoI GCGC 1 cut(s) 1441
Cfr10I RCCGGY 1 cut(s) 1206
Cfr13I GGNCC 2 cut(s) 400, 1452
ClaI ATCGAT 2 cut(s) 1182, 1194
CseI GACGC 2 cut(s) 301, 722
Csp6I GTAC 5 cut(s) 40, 256, 540, 601, 1084
CviAII CATG 2 cut(s) 160, 688
CviQI GTAC 5 cut(s) 40, 256, 540, 601, 1084
DdeI CTNAG 9 cut(s) 57, 606, 906, 958, 1131, 1213, 1280, 1466, 1533
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 680
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 2 cut(s) 371, 1290
Eco47I GGWCC 1 cut(s) 1452
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 2 cut(s) 167, 227
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 1098
EcoRII CCWGG 1 cut(s) 831
EcoT14I CCWWGG 1 cut(s) 680
EcoT22I ATGCAT 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 680
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 2 cut(s) 163, 691
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 1050, 1082
FaqI GGGAC 1 cut(s) 1112
FatI CATG 2 cut(s) 159, 687
FauI CCCGC 1 cut(s) 1333
FauNDI CATATG 1 cut(s) 723
FbaI TGATCA 1 cut(s) 547
FokI GGATG 5 cut(s) 59, 663, 1016, 1356, 1472
FriOI GRGCYC 1 cut(s) 168
FspBI CTAG 2 cut(s) 681, 1588
FspI TGCGCA 1 cut(s) 1440
GlaI GCGC 1 cut(s) 1440
GsaI CCCAGC 2 cut(s) 795, 1381
GsuI CTGGAG 1 cut(s) 1553
HaeIII GGCC 3 cut(s) 176, 401, 749
HapII CCGG 1 cut(s) 1207
HgaI GACGC 2 cut(s) 301, 722
HhaI GCGC 1 cut(s) 1441
Hin1II CATG 2 cut(s) 163, 691
Hin6I GCGC 1 cut(s) 1439
HinP1I GCGC 1 cut(s) 1439
HincII GTYRAC 3 cut(s) 73, 270, 566
HindII GTYRAC 3 cut(s) 73, 270, 566
HindIII AAGCTT 3 cut(s) 192, 449, 768
HinfI GANTC 8 cut(s) 33, 82, 251, 352, 499, 592, 851, 1179
HpaII CCGG 1 cut(s) 1207
HphI GGTGA 3 cut(s) 274, 1235, 1411
Hpy166II GTNNAC 7 cut(s) 73, 270, 566, 603, 1086, 1204, 1356
Hpy188I TCNGA 8 cut(s) 10, 46, 387, 856, 1052, 1097, 1374, 1581
Hpy8I GTNNAC 7 cut(s) 73, 270, 566, 603, 1086, 1204, 1356
HpyAV CCTTC 3 cut(s) 119, 166, 1331
HpyCH4III ACNGT 2 cut(s) 208, 305
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 7 cut(s) 373, 456, 584, 668, 721, 1311, 1493
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 749, 1216, 1490
HpyF3I CTNAG 9 cut(s) 57, 606, 906, 958, 1131, 1213, 1280, 1466, 1533
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 163, 691
HspAI GCGC 1 cut(s) 1439
Ksp22I TGATCA 1 cut(s) 547
LmnI GCTCC 4 cut(s) 52, 128, 163, 1319
Lsp1109I GCAGC 6 cut(s) 947, 1159, 1240, 1288, 1323, 1423
LweI GCATC 1 cut(s) 708
MaeI CTAG 2 cut(s) 681, 1588
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 3 cut(s) 289, 1223, 1583
MboII GAAGA 6 cut(s) 223, 419, 545, 1043, 1054, 1255
MfeI CAATTG 2 cut(s) 585, 1299
MflI RGATCY 4 cut(s) 213, 909, 954, 1092
MhlI GDGCHC 2 cut(s) 133, 168
MluCI AATT 9 cut(s) 459, 585, 635, 669, 693, 972, 996, 1098, 1299
MlyI GAGTC 2 cut(s) 361, 860
MmeI TCCRAC 1 cut(s) 1397
Mph1103I ATGCAT 1 cut(s) 723
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 6 cut(s) 189, 447, 774, 861, 978, 1068
MspA1I CMGCKG 3 cut(s) 287, 1279, 1436
MspCI CTTAAG 2 cut(s) 446, 977
MspI CCGG 1 cut(s) 1207
MspR9I CCNGG 1 cut(s) 833
MunI CAATTG 2 cut(s) 585, 1299
MvaI CCWGG 1 cut(s) 833
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 4 cut(s) 11, 749, 1216, 1490
NdeI CATATG 1 cut(s) 723
NlaIII CATG 2 cut(s) 163, 691
NlaIV GGNNCC 5 cut(s) 54, 165, 797, 1094, 1480
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 3 cut(s) 289, 1223, 1583
NsbI TGCGCA 1 cut(s) 1440
NsiI ATGCAT 1 cut(s) 723
NspV TTCGAA 1 cut(s) 1018
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 6 cut(s) 33, 82, 251, 499, 592, 1179
PflMI CCANNNNNTGG 2 cut(s) 872, 1520
PleI GAGTC 2 cut(s) 360, 859
PpsI GAGTC 2 cut(s) 360, 859
Psp6I CCWGG 1 cut(s) 831
PspFI CCCAGC 2 cut(s) 791, 1377
PspGI CCWGG 1 cut(s) 831
PspN4I GGNNCC 5 cut(s) 54, 165, 797, 1094, 1480
PspPI GGNCC 2 cut(s) 400, 1452
PsuI RGATCY 4 cut(s) 213, 909, 954, 1092
PvuII CAGCTG 2 cut(s) 287, 1279
RsaI GTAC 5 cut(s) 41, 257, 541, 602, 1085
RsaNI GTAC 5 cut(s) 40, 256, 540, 601, 1084
SaqAI TTAA 6 cut(s) 189, 447, 774, 861, 978, 1068
Sau96I GGNCC 2 cut(s) 400, 1452
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 2 cut(s) 361, 860
ScrFI CCNGG 1 cut(s) 833
SduI GDGCHC 2 cut(s) 133, 168
SfaNI GCATC 1 cut(s) 708
SfcI CTRYAG 1 cut(s) 301
SfuI TTCGAA 1 cut(s) 1018
SinI GGWCC 1 cut(s) 1452
SmlI CTYRAG 5 cut(s) 446, 503, 629, 977, 1056
SmoI CTYRAG 5 cut(s) 446, 503, 629, 977, 1056
Sse9I AATT 9 cut(s) 459, 585, 635, 669, 693, 972, 996, 1098, 1299
SsiI CCGC 7 cut(s) 711, 750, 1326, 1407, 1410, 1434, 1482
SspI AATATT 3 cut(s) 89, 824, 1167
SspMI CTAG 2 cut(s) 681, 1588
StyD4I CCNGG 1 cut(s) 831
StyI CCWWGG 1 cut(s) 680
TaaI ACNGT 2 cut(s) 208, 305
TaiI ACGT 1 cut(s) 72
TaqI TCGA 5 cut(s) 36, 78, 1018, 1182, 1194
TasI AATT 9 cut(s) 459, 585, 635, 669, 693, 972, 996, 1098, 1299
TatI WGTACW 2 cut(s) 39, 600
TauI GCSGC 5 cut(s) 714, 752, 1409, 1412, 1436
TfiI GAWTC 6 cut(s) 33, 82, 251, 499, 592, 1179
Tru1I TTAA 6 cut(s) 189, 447, 774, 861, 978, 1068
Tru9I TTAA 6 cut(s) 189, 447, 774, 861, 978, 1068
TscAI CASTG 5 cut(s) 310, 610, 743, 818, 1401
TseFI GTSAC 3 cut(s) 289, 1223, 1583
TseI GCWGC 6 cut(s) 935, 1147, 1253, 1276, 1311, 1436
Tsp45I GTSAC 3 cut(s) 289, 1223, 1583
TspDTI ATGAA 4 cut(s) 801, 1003, 1096, 1256
TspGWI ACGGA 4 cut(s) 45, 1105, 1306, 1465
TspRI CASTG 5 cut(s) 310, 610, 743, 818, 1401
Van91I CCANNNNNTGG 2 cut(s) 872, 1520
Vha464I CTTAAG 2 cut(s) 446, 977
VpaK11BI GGWCC 1 cut(s) 1452
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 3 cut(s) 459, 972, 1098
XmaJI CCTAGG 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 681, 1588
ZrmI AGTACT 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.