Rw4G029700

Cop9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
56428255 .. 56432939
4685 bp
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UTR
Exon/CDS
Intron
Rw4G029700.1

Sequence Viewer

Length: 1335 bp
ATGGCAGCGAACATGCAAACTGAATATGCTGATATGGAGGATTACGGATTCGAGTACTCGGACGAAGAGCCTGAGGAGCAGGACGTTGATATTGAGAACCAGTATTACAACTCCAAAGGTTTGGTTGAGACTGATCCAGAAGGAGCGCTTTCAGGATTTGAAGAAGTAATTCGCATGGAGCCTGACAAGGCTGAGTGGGGATTTAAATCTTTGAAGCAAACTGTGAAGATCTATTACCGTCTCAGGAGGTATAAAGAGATGATGGATTCATACAGGGAGATGTTGACATATATCAAATCAGCCGTAACACGGAATTACAGTGAAAAATGTATAAATAACATTATGGATTTTGTGTCCGGGTCAGCTAGTCAGAACTCTGGTCTCCTGCAAGATTTTTATCAGACCACTCTAAAGGCCCTTGAAGAGGCAAAGAATGAGAGGCTTTGGTTCAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGAGTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTCCACAAATCTTGTCAAAAGGAAGATGGTACTGATGATCAAAAGAAAGGAAGTCAACTTTTGGAGGTTTATGCAATTGAGATTCAAATGTACACTGAGACTAAAAATAACAAAAAGCTAAAGCAATTATACCAAAAAGCTCTTGCAATCAAGTCAGCAATACCTCATCCTAGAATCATGGGAATAATTCGTGAGTGTGGGGGTAAGATGCATATGACAGAGCGTCAGTGGGCAGAGGCCGCCACAGATTTTTTTGAAGCTTTCAAGAACTATGATGAAGCGGGGAACCAGAGGCGTATACAATGCTTGAAATATTTAGTTCTGGCTAATATGCTGATGCAGTCCGAGGTTAATCCATTTGATGGTCAAGAAGCAAAGCCGTATAAAAATGATCCTGAGATCTTGGCAATGACAAATCTGGTAGCAGCATATCAACGAAATGAGATATTGGAGTTCGAAAAAATTCTGAAGAGTAATAGGAAGACAATTATGGATGATCCATTCATTCGAAACTATATTGAAGATCTGTTGAAGAATATTAGAACACAAGTGCTGCTTAAACTAATCAAGCCGTACACACGAATCCGAATTCCCTTCATATCAAAGGAACTTAATGTCCCTGAGAAAGATGTTGAGCAGCTCTTGGTTTCACTAATTTTAGATAACAAAATCGATGGACATATTGATCAGGTGAACCAGCTCATGGAGCGCGGTGACAGGTCGAAGGGAAGGAAGAAGTATGCTGCCGTAGATAAATGGAACACACAGCTGAAGTCTCTTTCTCAAACTATTGGTAACCGAGTATATTGA

Protein Analysis

444

Amino Acids

52.08

Weight (kDa)

6.26

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 331 - 411 8.7e-24 PCI domain
COPS2_C PF25983 420 - 443 3.7e-12 COP9 signalosome complex subunit 2, C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 887, 1228
AccI GTMKAC 1 cut(s) 823
AccII CGCG 1 cut(s) 1236
AciI CCGC 3 cut(s) 765, 806, 1236
AclWI GGATC 3 cut(s) 128, 911, 1016
AcsI RAATTY 3 cut(s) 474, 987, 1113
AcuI CTGAAG 2 cut(s) 1013, 1316
AfaI GTAC 4 cut(s) 56, 556, 617, 1100
AfeI AGCGCT 1 cut(s) 147
AfiI CCNNNNNNNGG 4 cut(s) 309, 424, 887, 1228
AflII CTTAAG 1 cut(s) 461
AhdI GACNNNNNGTC 1 cut(s) 747
AloI GAACNNNNNNTCC 2 cut(s) 1125, 1157
AluBI AGCT 8 cut(s) 365, 466, 643, 665, 785, 1165, 1225, 1294
AluI AGCT 8 cut(s) 365, 466, 643, 665, 785, 1165, 1225, 1294
Alw26I GTCTC 5 cut(s) 122, 245, 386, 617, 1305
AlwI GGATC 3 cut(s) 128, 911, 1016
Aor51HI AGCGCT 1 cut(s) 147
AoxI GGCC 2 cut(s) 414, 762
ApeKI GCWGC 5 cut(s) 5, 950, 1078, 1162, 1268
ApoI RAATTY 3 cut(s) 474, 987, 1113
Asp700I GAANNNNTTC 2 cut(s) 168, 987
AspLEI GCGC 2 cut(s) 148, 1236
AspS9I GGNCC 1 cut(s) 415
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 2 cut(s) 1228, 1250
AsuII TTCGAA 2 cut(s) 981, 1033
AxyI CCTNAGG 1 cut(s) 72
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbsI GAAGAC 1 cut(s) 1013
BbvI GCAGC 5 cut(s) 17, 962, 1065, 1174, 1255
BccI CCATC 4 cut(s) 256, 545, 881, 1193
BceAI ACGGC 4 cut(s) 287, 889, 1081, 1256
BclI TGATCA 2 cut(s) 562, 1210
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 5 cut(s) 122, 245, 386, 617, 1305
BfaI CTAG 2 cut(s) 366, 696
BfoI RGCGCY 1 cut(s) 149
BfrI CTTAAG 1 cut(s) 461
BglII AGATCT 3 cut(s) 228, 924, 1048
BisI GCNGC 6 cut(s) 6, 765, 951, 1079, 1163, 1269
BlsI GCNGC 6 cut(s) 7, 766, 952, 1080, 1164, 1270
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 358
BmeRI GACNNNNNGTC 1 cut(s) 747
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 2 cut(s) 180, 812
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 2 cut(s) 723, 852
BpiI GAAGAC 1 cut(s) 1013
Bpu14I TTCGAA 2 cut(s) 981, 1033
BpuMI CCSGG 1 cut(s) 358
Bsa29I ATCGAT 1 cut(s) 1197
BsaBI GATNNNNATC 2 cut(s) 205, 396
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 870
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 424, 887, 1228
Bse1I ACTGG 1 cut(s) 100
Bse21I CCTNAGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 939
Bse8I GATNNNNATC 2 cut(s) 205, 396
BseCI ATCGAT 1 cut(s) 1197
BseDI CCNNGG 1 cut(s) 870
BseGI GGATG 2 cut(s) 691, 1024
BseJI GATNNNNATC 2 cut(s) 205, 396
BseLI CCNNNNNNNGG 4 cut(s) 309, 424, 887, 1228
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 6 cut(s) 63, 183, 256, 612, 912, 1137
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 5 cut(s) 17, 962, 1065, 1174, 1255
Bsh1236I CGCG 1 cut(s) 1236
BshFI GGCC 2 cut(s) 416, 764
BshVI ATCGAT 1 cut(s) 1197
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 1127
BslI CCNNNNNNNGG 4 cut(s) 309, 424, 887, 1228
BsmAI GTCTC 5 cut(s) 122, 245, 386, 617, 1305
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 1127
BsnI GGCC 2 cut(s) 416, 764
Bso31I GGTCTC 1 cut(s) 386
Bsp119I TTCGAA 2 cut(s) 981, 1033
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 8 cut(s) 133, 228, 562, 916, 924, 1021, 1048, 1210
BspACI CCGC 3 cut(s) 765, 806, 1236
BspANI GGCC 2 cut(s) 416, 764
BspCNI CTCAG 6 cut(s) 64, 184, 255, 613, 913, 1138
BspDI ATCGAT 1 cut(s) 1197
BspFNI CGCG 1 cut(s) 1236
BspLI GGNNCC 2 cut(s) 180, 812
BspPI GGATC 3 cut(s) 128, 911, 1016
BspQI GCTCTTC 1 cut(s) 60
BspT104I TTCGAA 2 cut(s) 981, 1033
BspTI CTTAAG 1 cut(s) 461
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 939
BsrGI TGTACA 1 cut(s) 615
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 870
BssMI GATC 8 cut(s) 133, 228, 562, 916, 924, 1021, 1048, 1210
BssNAI GTATAC 1 cut(s) 824
Bst1107I GTATAC 1 cut(s) 824
Bst4CI ACNGT 3 cut(s) 223, 239, 320
Bst6I CTCTTC 3 cut(s) 60, 417, 989
BstAFI CTTAAG 1 cut(s) 461
BstAUI TGTACA 1 cut(s) 615
BstBI TTCGAA 2 cut(s) 981, 1033
BstDEI CTNAG 6 cut(s) 72, 192, 242, 621, 921, 1146
BstEII GGTNACC 1 cut(s) 1319
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 691, 1024
BstFNI CGCG 1 cut(s) 1236
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 2 cut(s) 148, 1236
BstKTI GATC 8 cut(s) 136, 231, 565, 919, 927, 1024, 1051, 1213
BstMAI GTCTC 5 cut(s) 122, 245, 386, 617, 1305
BstMBI GATC 8 cut(s) 133, 228, 562, 916, 924, 1021, 1048, 1210
BstMWI GCNNNNNNNGC 3 cut(s) 76, 764, 1231
BstNSI RCATGY 1 cut(s) 16
BstPI GGTNACC 1 cut(s) 1319
BstSCI CCNGG 1 cut(s) 356
BstUI CGCG 1 cut(s) 1236
BstV1I GCAGC 5 cut(s) 17, 962, 1065, 1174, 1255
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 3 cut(s) 228, 924, 1048
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 3 cut(s) 228, 924, 1048
BstZ17I GTATAC 1 cut(s) 824
Bsu15I ATCGAT 1 cut(s) 1197
Bsu36I CCTNAGG 1 cut(s) 72
BsuRI GGCC 2 cut(s) 416, 764
BsuTUI ATCGAT 1 cut(s) 1197
BtsCI GGATG 2 cut(s) 691, 1024
BtsIMutI CAGTG 3 cut(s) 325, 618, 758
CfoI GCGC 2 cut(s) 148, 1236
Cfr13I GGNCC 1 cut(s) 415
ClaI ATCGAT 1 cut(s) 1197
CseI GACGC 1 cut(s) 737
Csp6I GTAC 4 cut(s) 55, 555, 616, 1099
CspCI CAANNNNNGTGG 2 cut(s) 518, 553
CviAII CATG 4 cut(s) 13, 175, 703, 1228
CviQI GTAC 4 cut(s) 55, 555, 616, 1099
DdeI CTNAG 6 cut(s) 72, 192, 242, 621, 921, 1146
DpnI GATC 8 cut(s) 135, 230, 564, 918, 926, 1023, 1050, 1212
DpnII GATC 8 cut(s) 133, 228, 562, 916, 924, 1021, 1048, 1210
DraI TTTAAA 1 cut(s) 205
DriI GACNNNNNGTC 1 cut(s) 747
Eam1104I CTCTTC 3 cut(s) 60, 417, 989
Eam1105I GACNNNNNGTC 1 cut(s) 747
EarI CTCTTC 3 cut(s) 60, 417, 989
Eco31I GGTCTC 1 cut(s) 386
Eco47III AGCGCT 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 1013, 1316
Eco81I CCTNAGG 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 1319
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 1319
EcoRI GAATTC 1 cut(s) 1113
EcoT22I ATGCAT 1 cut(s) 738
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 4 cut(s) 16, 178, 706, 1231
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 1065, 1097
FaqI GGGAC 1 cut(s) 1127
FatI CATG 4 cut(s) 12, 174, 702, 1227
FauI CCCGC 1 cut(s) 799
FauNDI CATATG 1 cut(s) 738
FbaI TGATCA 2 cut(s) 562, 1210
FblI GTMKAC 1 cut(s) 823
Fnu4HI GCNGC 6 cut(s) 6, 765, 951, 1079, 1163, 1269
FokI GGATG 2 cut(s) 678, 1031
Fsp4HI GCNGC 6 cut(s) 6, 765, 951, 1079, 1163, 1269
FspBI CTAG 2 cut(s) 366, 696
GlaI GCGC 2 cut(s) 147, 1235
GluI GCNGC 6 cut(s) 6, 765, 951, 1079, 1163, 1269
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 2 cut(s) 416, 764
HapII CCGG 1 cut(s) 357
HgaI GACGC 1 cut(s) 737
HhaI GCGC 2 cut(s) 148, 1236
Hin1II CATG 4 cut(s) 16, 178, 706, 1231
Hin6I GCGC 2 cut(s) 146, 1234
HinP1I GCGC 2 cut(s) 146, 1234
HincII GTYRAC 2 cut(s) 285, 581
HindII GTYRAC 2 cut(s) 285, 581
HindIII AAGCTT 2 cut(s) 464, 783
HinfI GANTC 5 cut(s) 48, 266, 607, 699, 1107
HpaII CCGG 1 cut(s) 357
HphI GGTGA 2 cut(s) 1228, 1250
Hpy166II GTNNAC 6 cut(s) 285, 581, 618, 824, 1101, 1219
Hpy188I TCNGA 6 cut(s) 61, 372, 402, 871, 993, 1112
Hpy188III TCNNGA 8 cut(s) 137, 153, 244, 451, 716, 790, 893, 920
Hpy8I GTNNAC 6 cut(s) 285, 581, 618, 824, 1101, 1219
HpyAV CCTTC 5 cut(s) 134, 514, 1129, 1243, 1248
HpyCH4III ACNGT 3 cut(s) 223, 239, 320
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 7 cut(s) 16, 388, 471, 599, 671, 736, 865
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 764, 1231
HpyF3I CTNAG 6 cut(s) 72, 192, 242, 621, 921, 1146
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 4 cut(s) 16, 178, 706, 1231
HspAI GCGC 2 cut(s) 146, 1234
Ksp22I TGATCA 2 cut(s) 562, 1210
Kzo9I GATC 8 cut(s) 133, 228, 562, 916, 924, 1021, 1048, 1210
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 4 cut(s) 76, 143, 178, 1231
Lsp1109I GCAGC 5 cut(s) 17, 962, 1065, 1174, 1255
LweI GCATC 2 cut(s) 723, 852
MaeI CTAG 2 cut(s) 366, 696
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 3 cut(s) 304, 1238, 1319
MalI GATC 8 cut(s) 135, 230, 564, 918, 926, 1023, 1050, 1212
MboI GATC 8 cut(s) 133, 228, 562, 916, 924, 1021, 1048, 1210
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 3 cut(s) 228, 924, 1048
Mph1103I ATGCAT 1 cut(s) 738
MroXI GAANNNNTTC 2 cut(s) 168, 987
MseI TTAA 5 cut(s) 204, 462, 876, 1083, 1137
MspA1I CMGCKG 1 cut(s) 1294
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 358
MunI CAATTG 1 cut(s) 600
MvnI CGCG 1 cut(s) 1236
MwoI GCNNNNNNNGC 3 cut(s) 76, 764, 1231
NciI CCSGG 1 cut(s) 358
NdeI CATATG 1 cut(s) 738
NdeII GATC 8 cut(s) 133, 228, 562, 916, 924, 1021, 1048, 1210
NlaIII CATG 4 cut(s) 16, 178, 706, 1231
NlaIV GGNNCC 2 cut(s) 180, 812
NmuCI GTSAC 1 cut(s) 1238
NsiI ATGCAT 1 cut(s) 738
NspI RCATGY 1 cut(s) 16
NspV TTCGAA 2 cut(s) 981, 1033
PciSI GCTCTTC 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 168, 987
PfeI GAWTC 5 cut(s) 48, 266, 607, 699, 1107
PflMI CCANNNNNTGG 2 cut(s) 887, 1228
PkrI GCNGC 6 cut(s) 7, 766, 952, 1080, 1164, 1270
PspEI GGTNACC 1 cut(s) 1319
PspN4I GGNNCC 2 cut(s) 180, 812
PspPI GGNCC 1 cut(s) 415
PsrI GAACNNNNNNTAC 2 cut(s) 89, 121
PsuI RGATCY 3 cut(s) 228, 924, 1048
PvuII CAGCTG 1 cut(s) 1294
RsaI GTAC 4 cut(s) 56, 556, 617, 1100
RsaNI GTAC 4 cut(s) 55, 555, 616, 1099
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 5 cut(s) 204, 462, 876, 1083, 1137
SatI GCNGC 6 cut(s) 6, 765, 951, 1079, 1163, 1269
Sau3AI GATC 8 cut(s) 133, 228, 562, 916, 924, 1021, 1048, 1210
Sau96I GGNCC 1 cut(s) 415
ScaI AGTACT 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 358
SfaNI GCATC 2 cut(s) 723, 852
SfuI TTCGAA 2 cut(s) 981, 1033
SmiI ATTTAAAT 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SsiI CCGC 3 cut(s) 765, 806, 1236
SspI AATATT 2 cut(s) 839, 1063
SspMI CTAG 2 cut(s) 366, 696
StyD4I CCNGG 1 cut(s) 356
SwaI ATTTAAAT 1 cut(s) 205
TaaI ACNGT 3 cut(s) 223, 239, 320
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 51, 981, 1033, 1197, 1247
TatI WGTACW 2 cut(s) 54, 615
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 5 cut(s) 48, 266, 607, 699, 1107
Tru1I TTAA 5 cut(s) 204, 462, 876, 1083, 1137
Tru9I TTAA 5 cut(s) 204, 462, 876, 1083, 1137
TscAI CASTG 3 cut(s) 325, 625, 758
TseFI GTSAC 1 cut(s) 1238
TseI GCWGC 5 cut(s) 5, 950, 1078, 1162, 1268
Tsp45I GTSAC 1 cut(s) 1238
TspDTI ATGAA 4 cut(s) 258, 816, 1018, 1111
TspGWI ACGGA 2 cut(s) 60, 325
TspRI CASTG 3 cut(s) 325, 625, 758
Van91I CCANNNNNTGG 2 cut(s) 887, 1228
Vha464I CTTAAG 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 3 cut(s) 474, 987, 1113
XceI RCATGY 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 823
XmnI GAANNNNTTC 2 cut(s) 168, 987
XspI CTAG 2 cut(s) 366, 696
ZrmI AGTACT 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.