Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016267.1

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 514

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016267.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 250 bp

actaatcaagccgtacacacggatccgaattcctttcatatcaaaggaactcaatgtccctgagaaagatgttgagcagctcttggtttcactaatattggataaccgaatcgatggacatatcgatcaagtgaaccggctcttagagcgtggtgacaggtcaaagggaatgaagaagtatgctgccgtagataaatggaacacgcagctgaggtctctttaccaaacaattggtaaccgagtatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

82

Amino Acids

9.65

Weight (kDa)

9.75

Isoelectric Point (pI)

30.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	17, 30
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	1 cut(s)	15
AloI	GAACNNNNNNTCC	2 cut(s)	40, 72
AluBI	AGCT	2 cut(s)	80, 209
AluI	AGCT	2 cut(s)	80, 209
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	2 cut(s)	17, 30
ApeKI	GCWGC	3 cut(s)	77, 183, 206
ApoI	RAATTY	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	89, 170, 218
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	220
BisI	GCNGC	3 cut(s)	78, 184, 207
BlsI	GCNGC	3 cut(s)	79, 185, 208
BmiI	GGNNCC	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	210
Bsa29I	ATCGAT	2 cut(s)	112, 124
BsaI	GGTCTC	1 cut(s)	220
Bse118I	RCCGGY	1 cut(s)	136
BseCI	ATCGAT	2 cut(s)	112, 124
BseMII	CTCAG	2 cut(s)	52, 201
BseXI	GCAGC	3 cut(s)	89, 170, 218
BshVI	ATCGAT	2 cut(s)	112, 124
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	22, 125
BspCNI	CTCAG	2 cut(s)	53, 202
BspDI	ATCGAT	2 cut(s)	112, 124
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	2 cut(s)	17, 30
BspTNI	GGTCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssMI	GATC	2 cut(s)	22, 125
BstDEI	CTNAG	3 cut(s)	61, 143, 210
BstEII	GGTNACC	1 cut(s)	234
BstKTI	GATC	2 cut(s)	25, 128
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	22, 125
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	89, 170, 218
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	2 cut(s)	112, 124
BsuTUI	ATCGAT	2 cut(s)	112, 124
Cfr10I	RCCGGY	1 cut(s)	136
ClaI	ATCGAT	2 cut(s)	112, 124
Csp6I	GTAC	1 cut(s)	14
CviJI	RGCY	4 cut(s)	11, 80, 140, 209
CviKI_1	RGCY	4 cut(s)	11, 80, 140, 209
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	3 cut(s)	61, 143, 210
DpnI	GATC	2 cut(s)	24, 127
DpnII	GATC	2 cut(s)	22, 125
Eco31I	GGTCTC	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	234
EcoO65I	GGTNACC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	28
FaiI	YATR	4 cut(s)	39, 121, 181, 245
FaqI	GGGAC	1 cut(s)	42
Fnu4HI	GCNGC	3 cut(s)	78, 184, 207
Fsp4HI	GCNGC	3 cut(s)	78, 184, 207
GluI	GCNGC	3 cut(s)	78, 184, 207
HapII	CCGG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	16, 134
Hpy188I	TCNGA	1 cut(s)	27
Hpy8I	GTNNAC	2 cut(s)	16, 134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	3 cut(s)	61, 143, 210
Kzo9I	GATC	2 cut(s)	22, 125
LpnPI	CCDG	3 cut(s)	73, 143, 150
Lsp1109I	GCAGC	3 cut(s)	89, 170, 218
MaeIII	GTNAC	2 cut(s)	153, 234
MalI	GATC	2 cut(s)	24, 127
MboI	GATC	2 cut(s)	22, 125
MboII	GAAGA	1 cut(s)	185
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	2 cut(s)	28, 229
MnlI	CCTC	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	2 cut(s)	22, 125
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	79, 185, 208
PspEI	GGTNACC	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SatI	GCNGC	3 cut(s)	78, 184, 207
Sau3AI	GATC	2 cut(s)	22, 125
SetI	ASST	4 cut(s)	82, 162, 211, 216
SgeI	CNNG	9 cut(s)	20, 31, 72, 95, 141, 149, 162, 170, 215
Sse9I	AATT	2 cut(s)	28, 229
SspI	AATATT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	112, 124
TasI	AATT	2 cut(s)	28, 229
TfiI	GAWTC	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	3 cut(s)	77, 183, 206
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	26, 186
TspGWI	ACGGA	1 cut(s)	35
XapI	RAATTY	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.