Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036582.1

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Forward (+)

4558 .. 5527

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036582.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgggttccgatgctgatatggaggattacggattcgagtactcggacgaagagcctgaggagcaggacgttgatattgagaaccagtattacaactccaaaggtttggttgagactgatccagaaggagcgctttcaggatttgaagaagtaattcgcatggagcctgaaaaggctgagtggggatttaaatctttgaagcaaactgtgaagatctattaccgtctcaggaggtataaagagatgatggattcatacagggagatgttgacatatatcaaatcagccgtaacacggaattacagtgaaaaatgtataaataacattatggattttgtgtccgggtcagctagtcagaactctggtctcctgcaagatttttatcagaccactctaaaggcccttgaagaggcaaagaatgaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

142

Amino Acids

16.56

Weight (kDa)

4.39

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	41
AfeI	AGCGCT	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	294, 409
AgsI	TTSAA	3 cut(s)	146, 199, 407
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	3 cut(s)	107, 230, 371
AlwI	GGATC	1 cut(s)	113
Aor51HI	AGCGCT	1 cut(s)	132
AoxI	GGCC	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	400
AsuC2I	CCSGG	1 cut(s)	343
AxyI	CCTNAGG	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BccI	CCATC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	3 cut(s)	107, 230, 371
BfaI	CTAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	134
BglII	AGATCT	1 cut(s)	213
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	2 cut(s)	7, 165
BmrFI	CCNGG	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	343
BsaBI	GATNNNNATC	2 cut(s)	190, 381
BsaI	GGTCTC	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 409
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	2 cut(s)	190, 381
BseJI	GATNNNNATC	2 cut(s)	190, 381
BseLI	CCNNNNNNNGG	2 cut(s)	294, 409
BseMII	CTCAG	3 cut(s)	48, 168, 241
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	294, 409
BsmAI	GTCTC	3 cut(s)	107, 230, 371
BsmBI	CGTCTC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	401
Bso31I	GGTCTC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	118, 213
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	3 cut(s)	49, 169, 240
BspLI	GGNNCC	2 cut(s)	7, 165
BspPI	GGATC	1 cut(s)	113
BspQI	GCTCTTC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	2 cut(s)	118, 213
Bst4CI	ACNGT	3 cut(s)	208, 224, 305
Bst6I	CTCTTC	2 cut(s)	45, 402
BstDEI	CTNAG	3 cut(s)	57, 177, 227
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	121, 216
BstMAI	GTCTC	3 cut(s)	107, 230, 371
BstMBI	GATC	2 cut(s)	118, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	6 cut(s)	55, 166, 176, 287, 350, 401
CviKI_1	RGCY	6 cut(s)	55, 166, 176, 287, 350, 401
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	3 cut(s)	57, 177, 227
DpnI	GATC	2 cut(s)	120, 215
DpnII	GATC	2 cut(s)	118, 213
DraI	TTTAAA	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	45, 402
EarI	CTCTTC	2 cut(s)	45, 402
Eco31I	GGTCTC	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	1 cut(s)	163
FaiI	YATR	8 cut(s)	20, 161, 237, 256, 274, 276, 317, 329
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	1 cut(s)	159
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	342
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	33, 251
HpaII	CCGG	1 cut(s)	342
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	5 cut(s)	10, 46, 357, 387, 428
Hpy188III	TCNNGA	3 cut(s)	122, 138, 229
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	3 cut(s)	208, 224, 305
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	3 cut(s)	57, 177, 227
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	118, 213
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	61, 128, 163
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	120, 215
MboI	GATC	2 cut(s)	118, 213
MboII	GAAGA	4 cut(s)	62, 158, 223, 419
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	2 cut(s)	153, 298
MnlI	CCTC	5 cut(s)	16, 52, 225, 403, 415
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	1 cut(s)	189
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	61
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	2 cut(s)	118, 213
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	7, 165
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	33, 251
PspN4I	GGNNCC	2 cut(s)	7, 165
PspPI	GGNCC	1 cut(s)	400
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	118, 213
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	343
SetI	ASST	5 cut(s)	72, 106, 236, 352, 426
SmiI	ATTTAAAT	1 cut(s)	190
Sse9I	AATT	2 cut(s)	153, 298
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	341
SwaI	ATTTAAAT	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	208, 224, 305
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	153, 298
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	33, 251
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	2 cut(s)	45, 310
TspRI	CASTG	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	351
ZrmI	AGTACT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.