Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Forward (+)

49053042 .. 49059014

Gene Structure 5973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGATGAGGAGCCTGAGGAACAGGACGTTGACATCGAGAATCAATATTACAACTCTAAAGGTTTGGTTGAGACTGATCCAGAAGGAGCACTTTCAGGATTTGAGGAAGTAGTTCGCATGGAGCCCGAGAAGGCCGAGTGGGGATTTAAAGCTTTGAAACAGACTGTGAAGATCTATTATCGTCTCGGGAGGTATAAAGAAATGATGGATTCGTACAGGGTGATGTTGACATACATCAAATCAGCTGTGACGCGAAACTACAGTGAGAAATGTATAAACAACATTATGGATTTTGTTTCTGGATCAGCGAGTCAAAACTTTGGTCTCTTGCAAGAGTTTTATCAGACCACTCTAAAGGCCCTTGAAGAGGCAAAGAATGAGAGGCTTTGGTTCAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGGGCGAATATGGGAGAATGAGTAAGATTCTCAAGGAACTCCATAAGTCTTGTCAAAAAGAAGATGGTACAGATGATCAAAAGAAAGGAAGTCAACTTTTGGAGGTTTATGCAATTGAGATTCAAATGTACACTGAGACTAAAAATAACAAAAAGCTCAAGCAATTATACCAAAAAGCTCTTGCGATCAAGTCTGCAATTCCTCATCCTAGGATCATGGGCATTATTCGTGAGTGTGGCGGCAAGATGCATATGGCAGAGCGTCAGTGGGCAGAGGCCGCCACAGATTTTTTTGAAGCTTTTAAGAACTATGATGAAGCTGGGAACCAGAGGCGTATTCAATGCTTGAAATATTTAGTCCTGGCTAATATGCTGATGGAGTCCGAGGTTAATCCATTTGATGGTCAAGAAGCAAAGCCGTATAAAAATGATCCTGAGATCTTGGCAATGACAAATCTCATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAGGTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

329

Amino Acids

38.45

Weight (kDa)

5.16

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	872
AccII	CGCG	1 cut(s)	295
AciI	CCGC	2 cut(s)	711, 750
AclWI	GGATC	4 cut(s)	113, 352, 692, 896
AcsI	RAATTY	2 cut(s)	459, 972
AfaI	GTAC	4 cut(s)	41, 257, 541, 602
AfiI	CCNNNNNNNGG	2 cut(s)	409, 872
AflII	CTTAAG	2 cut(s)	446, 977
AgsI	TTSAA	7 cut(s)	199, 407, 436, 596, 767, 812, 820
AjnI	CCWGG	1 cut(s)	831
AluBI	AGCT	7 cut(s)	194, 287, 451, 628, 650, 770, 791
AluI	AGCT	7 cut(s)	194, 287, 451, 628, 650, 770, 791
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	4 cut(s)	107, 230, 371, 602
AlwI	GGATC	4 cut(s)	113, 352, 692, 896
Ama87I	CYCGRG	2 cut(s)	167, 227
AoxI	GGCC	3 cut(s)	174, 399, 747
ApeKI	GCWGC	1 cut(s)	935
ApoI	RAATTY	2 cut(s)	459, 972
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
Asp700I	GAANNNNTTC	1 cut(s)	153
AspA2I	CCTAGG	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	2 cut(s)	167, 227
AvrII	CCTAGG	1 cut(s)	680
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	947
BccI	CCATC	4 cut(s)	241, 530, 841, 866
BceAI	ACGGC	1 cut(s)	874
BciT130I	CCWGG	1 cut(s)	833
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	4 cut(s)	107, 230, 371, 602
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	1 cut(s)	301
BfrI	CTTAAG	2 cut(s)	446, 977
BglII	AGATCT	3 cut(s)	213, 909, 954
BisI	GCNGC	3 cut(s)	712, 750, 936
BlnI	CCTAGG	1 cut(s)	680
BlsI	GCNGC	3 cut(s)	713, 751, 937
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	833
BmeT110I	CYCGRG	2 cut(s)	167, 227
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	3 cut(s)	54, 165, 797
BmrFI	CCNGG	1 cut(s)	833
BmsI	GCATC	1 cut(s)	708
BpuEI	CTTGAG	2 cut(s)	488, 614
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	680, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 872
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	924
BseBI	CCWGG	1 cut(s)	833
BseDI	CCNNGG	2 cut(s)	680, 855
BseGI	GGATG	2 cut(s)	52, 676
BseLI	CCNNNNNNNGG	2 cut(s)	409, 872
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	3 cut(s)	48, 597, 897
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	947
BseYI	CCCAGC	1 cut(s)	791
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	3 cut(s)	176, 401, 749
BsiHKAI	GWGCWC	1 cut(s)	133
BsiHKCI	CYCGRG	2 cut(s)	167, 227
BslI	CCNNNNNNNGG	2 cut(s)	409, 872
BsmAI	GTCTC	4 cut(s)	107, 230, 371, 602
BsmBI	CGTCTC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	176, 401, 749
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	2 cut(s)	167, 227
Bsp1286I	GDGCHC	2 cut(s)	133, 168
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	9 cut(s)	118, 213, 344, 547, 657, 684, 901, 909, 954
BspACI	CCGC	2 cut(s)	711, 750
BspANI	GGCC	3 cut(s)	176, 401, 749
BspCNI	CTCAG	3 cut(s)	49, 598, 898
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	3 cut(s)	54, 165, 797
BspPI	GGATC	4 cut(s)	113, 352, 692, 896
BspTI	CTTAAG	2 cut(s)	446, 977
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	600
BssECI	CCNNGG	2 cut(s)	680, 855
BssMI	GATC	9 cut(s)	118, 213, 344, 547, 657, 684, 901, 909, 954
BssT1I	CCWWGG	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	2 cut(s)	208, 305
Bst6I	CTCTTC	1 cut(s)	402
BstAFI	CTTAAG	2 cut(s)	446, 977
BstAUI	TGTACA	1 cut(s)	600
BstDEI	CTNAG	4 cut(s)	57, 606, 906, 958
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	52, 676
BstFNI	CGCG	1 cut(s)	295
BstKTI	GATC	9 cut(s)	121, 216, 347, 550, 660, 687, 904, 912, 957
BstMAI	GTCTC	4 cut(s)	107, 230, 371, 602
BstMBI	GATC	9 cut(s)	118, 213, 344, 547, 657, 684, 901, 909, 954
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 749
BstNI	CCWGG	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	831
BstSFI	CTRYAG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	947
BstX2I	RGATCY	3 cut(s)	213, 909, 954
BstYI	RGATCY	3 cut(s)	213, 909, 954
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	176, 401, 749
BtsCI	GGATG	2 cut(s)	52, 676
BtsIMutI	CAGTG	3 cut(s)	310, 603, 743
Cfr13I	GGNCC	1 cut(s)	400
CseI	GACGC	2 cut(s)	301, 722
Csp6I	GTAC	4 cut(s)	40, 256, 540, 601
CviAII	CATG	2 cut(s)	160, 688
CviQI	GTAC	4 cut(s)	40, 256, 540, 601
DdeI	CTNAG	4 cut(s)	57, 606, 906, 958
DpnI	GATC	9 cut(s)	120, 215, 346, 549, 659, 686, 903, 911, 956
DpnII	GATC	9 cut(s)	118, 213, 344, 547, 657, 684, 901, 909, 954
DraI	TTTAAA	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	371
Eco81I	CCTNAGG	1 cut(s)	57
Eco88I	CYCGRG	2 cut(s)	167, 227
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	723
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	680
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	163, 691
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	2 cut(s)	159, 687
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	3 cut(s)	712, 750, 936
FokI	GGATG	2 cut(s)	59, 663
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	712, 750, 936
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	3 cut(s)	712, 750, 936
GsaI	CCCAGC	1 cut(s)	795
HaeIII	GGCC	3 cut(s)	176, 401, 749
HgaI	GACGC	2 cut(s)	301, 722
Hin1II	CATG	2 cut(s)	163, 691
HincII	GTYRAC	3 cut(s)	73, 270, 566
HindII	GTYRAC	3 cut(s)	73, 270, 566
HindIII	AAGCTT	3 cut(s)	192, 449, 768
HinfI	GANTC	7 cut(s)	33, 82, 251, 352, 499, 592, 851
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	4 cut(s)	73, 270, 566, 603
Hpy188I	TCNGA	4 cut(s)	10, 46, 387, 856
Hpy188III	TCNNGA	9 cut(s)	79, 122, 138, 229, 342, 436, 701, 878, 905
Hpy8I	GTNNAC	4 cut(s)	73, 270, 566, 603
HpyAV	CCTTC	2 cut(s)	119, 166
HpyCH4III	ACNGT	2 cut(s)	208, 305
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	5 cut(s)	373, 456, 584, 668, 721
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 749
HpyF3I	CTNAG	4 cut(s)	57, 606, 906, 958
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	163, 691
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	9 cut(s)	118, 213, 344, 547, 657, 684, 901, 909, 954
LmnI	GCTCC	3 cut(s)	52, 128, 163
Lsp1109I	GCAGC	1 cut(s)	947
LweI	GCATC	1 cut(s)	708
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	9 cut(s)	120, 215, 346, 549, 659, 686, 903, 911, 956
MboI	GATC	9 cut(s)	118, 213, 344, 547, 657, 684, 901, 909, 954
MboII	GAAGA	3 cut(s)	223, 419, 545
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	3 cut(s)	213, 909, 954
MhlI	GDGCHC	2 cut(s)	133, 168
MluCI	AATT	5 cut(s)	459, 585, 635, 669, 972
MlyI	GAGTC	2 cut(s)	361, 860
Mph1103I	ATGCAT	1 cut(s)	723
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	6 cut(s)	189, 447, 774, 861, 978, 988
MspA1I	CMGCKG	1 cut(s)	287
MspCI	CTTAAG	2 cut(s)	446, 977
MspR9I	CCNGG	1 cut(s)	833
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	833
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	11, 749
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	9 cut(s)	118, 213, 344, 547, 657, 684, 901, 909, 954
NlaIII	CATG	2 cut(s)	163, 691
NlaIV	GGNNCC	3 cut(s)	54, 165, 797
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	723
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	5 cut(s)	33, 82, 251, 499, 592
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	3 cut(s)	713, 751, 937
PleI	GAGTC	2 cut(s)	360, 859
PpsI	GAGTC	2 cut(s)	360, 859
Psp6I	CCWGG	1 cut(s)	831
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	831
PspN4I	GGNNCC	3 cut(s)	54, 165, 797
PspPI	GGNCC	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	213, 909, 954
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	4 cut(s)	41, 257, 541, 602
RsaNI	GTAC	4 cut(s)	40, 256, 540, 601
SaqAI	TTAA	6 cut(s)	189, 447, 774, 861, 978, 988
SatI	GCNGC	3 cut(s)	712, 750, 936
Sau3AI	GATC	9 cut(s)	118, 213, 344, 547, 657, 684, 901, 909, 954
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	1 cut(s)	41
SchI	GAGTC	2 cut(s)	361, 860
ScrFI	CCNGG	1 cut(s)	833
SduI	GDGCHC	2 cut(s)	133, 168
SfaNI	GCATC	1 cut(s)	708
SfcI	CTRYAG	1 cut(s)	301
SmlI	CTYRAG	4 cut(s)	446, 503, 629, 977
SmoI	CTYRAG	4 cut(s)	446, 503, 629, 977
Sse9I	AATT	5 cut(s)	459, 585, 635, 669, 972
SsiI	CCGC	2 cut(s)	711, 750
SspI	AATATT	2 cut(s)	89, 824
SspMI	CTAG	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	831
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	208, 305
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	36, 78
TasI	AATT	5 cut(s)	459, 585, 635, 669, 972
TatI	WGTACW	2 cut(s)	39, 600
TauI	GCSGC	2 cut(s)	714, 752
TfiI	GAWTC	5 cut(s)	33, 82, 251, 499, 592
Tru1I	TTAA	6 cut(s)	189, 447, 774, 861, 978, 988
Tru9I	TTAA	6 cut(s)	189, 447, 774, 861, 978, 988
TscAI	CASTG	3 cut(s)	310, 610, 743
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	935
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	801
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	310, 610, 743
Van91I	CCANNNNNTGG	1 cut(s)	872
Vha464I	CTTAAG	2 cut(s)	446, 977
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	2 cut(s)	459, 972
XmaJI	CCTAGG	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	681
ZrmI	AGTACT	1 cut(s)	41
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.