Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004427

Physical Location & Seq

Genomic Coordinates Forward (+)

13935812 .. 13943169

Gene Structure 7358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G156800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGGTTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGATGAGGAGCCTGAGGAACAGGATGTTGACATTGAGAACCAATATTACAACTCTAAAGGTTTGGTTGAGACAGATCCCGAAGGAGCTCTTTCAGGATTCGATGAAGTAGTTCGAATGGAGCCTGAGAAGGCCGAGTGGGGATTTAAAGCTTTGAAGCAAACTGTGAAGCTTTATTATCGTCTGGGGAGGTATAAAGAAATGATGGATGCGTACAGGGTGATGTTGACATATATCAAATCAGCAGTAACACGAAATTACAGTGAAAAATGTATAAACAATATTATGGATTTTGTTTCTGGTTCAGCTAGTCAGAACTTTGGTCTCCTGCAAGAGTTCTATCAGACCACTTTAAAGGCCCTTGAAGAGGCAAAGAATGAGAGACTTTGGTTCAAGACAAATCTTAAGCTGTGCAAAATTTGGTTTGATATGGGTGAATATGGGCGAATGAATAAGATTCTGAAAGAACTCCATAAATCTTGTCAAAAAGAAGATGGTACAGATGACCAAAAGAAAGGAAGTCAACTTCTGGAGGTTTATGCAATTGAGATTCAGATGTACACGGAGACTAAAAATAATAAAAAGCTCAAGCAATTATACCAAAAAGCGCTTGCAATCAAGTCAGCAATACCTCATCCTAGGATAATGGGAATAATTCGTGAGTGTGGGGGGAAGATGCATATGGCAGAGCGTCAGTGGGCAGATGCAGCCACAGATTTTTTTGAAGCCTTTAAGAACTACGATGAAGCTGGGAACCAGAGGCGTATACAATGCTTAAAGTATCTAGTTCTGGCTAATATGCTGATGGAGTCAGAGGTTAATCCATTTGATGGTCAAGAAGCAAAGCCGTATAAAAATGATCCTGAGATCTTGGCAATGACAAATCTGATAGCAGCATATCAACGAAATGAGATACTGGAGTTTGAGAAAATTCTTAAGAGTAACAGGAGGACAATTATGGATGATCCGTTCATCCGAAACTATATTGAAGATCTGTTGAAGAATGTTAGGACACAAGTGCTGCTTAAACTTATCAAGCCGTACACTAGAATACGGATTCCCTTCATATCAAAGGAACTTAATGTGCCTGAGAAAGATGTTGAGCAACTCTTGGTTTCGCTTATTTTGGATAACCGAATCGATGGACATATAGATCAGGTGAACCGGCTCTTAGAGCGTGGTGACAGGTCAAAGGGAATGAAGAAATATGCTGCTATAGATAAATGGAACACACAGCTAAAGTCTCTTTACCAAACTATCAGTAACCGAGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019538 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0140110 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

440

Amino Acids

51.45

Weight (kDa)

6.05

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26990
fragaria_vesca	FvH4_4g27570
malus_domestica	MD00G1108200.v1.1 MD03G1163800.v1.1 MD11G1176300.v1.1
prunus_persica	Prupe.6G156800_v2.0.a1 Prupe.6G156800_v2.0.a1
pyrus_communis	pycom11g15960 pycom11g16000
rosa_chinensis	RchiOBHm_Chr4g0435421 RchiOBHm_Chr5g0050051
rosa_laevigata	RLG00000006594 RLG00000034682
rosa_multiflora	Rmu_sc0000333.1_g000008 Rmu_sc0001940.1_g000023 Rmu_sc0009623.1_g000002 Rmu_sc0016267.1_g000001 Rmu_sc0036582.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031080 Rroxscaffold_5G00376660
rosa_rugosa	Rorug04G0284900 Rorug05G0256900
rosa_samantha	Rh4AG340600 Rh4BG348900 Rh4CG363400 Rh4DG343100 Rh5AG330100 Rh5BG340800 Rh5CG367400 Rh5DG353500
rosa_wichuraiana	Rw4G029700 Rw5G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	872
AccI	GTMKAC	1 cut(s)	808
AclWI	GGATC	3 cut(s)	113, 896, 1001
AcsI	RAATTY	2 cut(s)	459, 972
AfaI	GTAC	5 cut(s)	41, 257, 541, 602, 1085
AfeI	AGCGCT	1 cut(s)	651
AfiI	CCNNNNNNNGG	2 cut(s)	409, 872
AflII	CTTAAG	2 cut(s)	446, 977
AgsI	TTSAA	6 cut(s)	199, 407, 436, 767, 1031, 1042
AloI	GAACNNNNNNTCC	2 cut(s)	995, 1027
AluBI	AGCT	8 cut(s)	131, 194, 214, 350, 451, 628, 791, 1279
AluI	AGCT	8 cut(s)	131, 194, 214, 350, 451, 628, 791, 1279
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	5 cut(s)	107, 371, 418, 602, 1290
AlwI	GGATC	3 cut(s)	113, 896, 1001
Aor51HI	AGCGCT	1 cut(s)	651
AoxI	GGCC	2 cut(s)	174, 399
ApeKI	GCWGC	4 cut(s)	749, 935, 1063, 1253
ApoI	RAATTY	2 cut(s)	459, 972
Asp700I	GAANNNNTTC	1 cut(s)	153
AspA2I	CCTAGG	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	4 cut(s)	274, 488, 1213, 1235
AsuII	TTCGAA	1 cut(s)	157
AvrII	CCTAGG	1 cut(s)	680
AxyI	CCTNAGG	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	947, 980
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	4 cut(s)	761, 947, 1050, 1240
BccI	CCATC	5 cut(s)	241, 530, 841, 866, 1178
BceAI	ACGGC	2 cut(s)	874, 1066
BcoDI	GTCTC	5 cut(s)	107, 371, 418, 602, 1290
BfaI	CTAG	4 cut(s)	351, 681, 827, 1089
BfmI	CTRYAG	1 cut(s)	1257
BfoI	RGCGCY	1 cut(s)	653
BfrI	CTTAAG	2 cut(s)	446, 977
BglII	AGATCT	2 cut(s)	909, 1033
BisI	GCNGC	4 cut(s)	750, 936, 1064, 1254
BlnI	CCTAGG	1 cut(s)	680
BlsI	GCNGC	4 cut(s)	751, 937, 1065, 1255
BmcAI	AGTACT	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	4 cut(s)	7, 54, 165, 797
BmsI	GCATC	3 cut(s)	241, 708, 736
BpmI	CTGGAG	2 cut(s)	593, 980
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	614
Bsa29I	ATCGAT	1 cut(s)	1182
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 872
Bse118I	RCCGGY	1 cut(s)	1206
Bse1I	ACTGG	1 cut(s)	963
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	924
BseCI	ATCGAT	1 cut(s)	1182
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	6 cut(s)	52, 73, 256, 676, 1009, 1014
BseLI	CCNNNNNNNGG	2 cut(s)	409, 872
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	4 cut(s)	48, 159, 897, 1122
BseNI	ACTGG	1 cut(s)	963
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	4 cut(s)	761, 947, 1050, 1240
BseYI	CCCAGC	1 cut(s)	791
BshFI	GGCC	2 cut(s)	176, 401
BshVI	ATCGAT	1 cut(s)	1182
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	1207
BslI	CCNNNNNNNGG	2 cut(s)	409, 872
BsmAI	GTCTC	5 cut(s)	107, 371, 418, 602, 1290
BsnI	GGCC	2 cut(s)	176, 401
Bso31I	GGTCTC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	6 cut(s)	118, 901, 909, 1006, 1033, 1195
BspANI	GGCC	2 cut(s)	176, 401
BspCNI	CTCAG	4 cut(s)	49, 160, 898, 1123
BspDI	ATCGAT	1 cut(s)	1182
BspLI	GGNNCC	4 cut(s)	7, 54, 165, 797
BspPI	GGATC	3 cut(s)	113, 896, 1001
BspT104I	TTCGAA	1 cut(s)	157
BspTI	CTTAAG	2 cut(s)	446, 977
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	924
BsrFI	RCCGGY	1 cut(s)	1206
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	963
BssAI	RCCGGY	1 cut(s)	1206
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	6 cut(s)	118, 901, 909, 1006, 1033, 1195
BssNAI	GTATAC	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	680
Bst1107I	GTATAC	1 cut(s)	809
Bst4CI	ACNGT	2 cut(s)	208, 305
Bst6I	CTCTTC	1 cut(s)	402
BstAFI	CTTAAG	2 cut(s)	446, 977
BstAUI	TGTACA	1 cut(s)	600
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	654
BstDEI	CTNAG	5 cut(s)	57, 168, 906, 1131, 1213
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	6 cut(s)	52, 73, 256, 676, 1009, 1014
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	6 cut(s)	121, 904, 912, 1009, 1036, 1198
BstMAI	GTCTC	5 cut(s)	107, 371, 418, 602, 1290
BstMBI	GATC	6 cut(s)	118, 901, 909, 1006, 1033, 1195
BstMWI	GCNNNNNNNGC	2 cut(s)	749, 1216
BstSFI	CTRYAG	1 cut(s)	1257
BstV1I	GCAGC	4 cut(s)	761, 947, 1050, 1240
BstX2I	RGATCY	3 cut(s)	118, 909, 1033
BstYI	RGATCY	3 cut(s)	118, 909, 1033
BstZ17I	GTATAC	1 cut(s)	809
Bsu15I	ATCGAT	1 cut(s)	1182
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	176, 401
BsuTUI	ATCGAT	1 cut(s)	1182
BtsCI	GGATG	6 cut(s)	52, 73, 256, 676, 1009, 1014
BtsIMutI	CAGTG	2 cut(s)	310, 743
Cac8I	GCNNGC	1 cut(s)	654
CfoI	GCGC	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	1206
Cfr13I	GGNCC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	1182
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	5 cut(s)	40, 256, 540, 601, 1084
CviQI	GTAC	5 cut(s)	40, 256, 540, 601, 1084
DdeI	CTNAG	5 cut(s)	57, 168, 906, 1131, 1213
DpnI	GATC	6 cut(s)	120, 903, 911, 1008, 1035, 1197
DpnII	GATC	6 cut(s)	118, 901, 909, 1006, 1033, 1195
DraI	TTTAAA	2 cut(s)	190, 396
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	651
Eco53kI	GAGCTC	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	723
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	680
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 1050, 1082
FauNDI	CATATG	1 cut(s)	723
FblI	GTMKAC	1 cut(s)	808
Fnu4HI	GCNGC	4 cut(s)	750, 936, 1064, 1254
FokI	GGATG	6 cut(s)	59, 80, 263, 663, 1001, 1016
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	4 cut(s)	750, 936, 1064, 1254
FspBI	CTAG	4 cut(s)	351, 681, 827, 1089
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	4 cut(s)	750, 936, 1064, 1254
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	2 cut(s)	593, 980
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	2 cut(s)	176, 401
HapII	CCGG	1 cut(s)	1207
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	1 cut(s)	652
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HincII	GTYRAC	3 cut(s)	73, 270, 566
HindII	GTYRAC	3 cut(s)	73, 270, 566
HindIII	AAGCTT	2 cut(s)	192, 212
HinfI	GANTC	7 cut(s)	33, 141, 499, 592, 851, 1099, 1179
HpaII	CCGG	1 cut(s)	1207
HphI	GGTGA	4 cut(s)	274, 488, 1213, 1235
Hpy166II	GTNNAC	7 cut(s)	73, 270, 566, 603, 809, 1086, 1204
Hpy188I	TCNGA	9 cut(s)	10, 46, 357, 387, 504, 597, 856, 930, 1019
Hpy188III	TCNNGA	7 cut(s)	122, 138, 436, 572, 701, 878, 905
Hpy8I	GTNNAC	7 cut(s)	73, 270, 566, 603, 809, 1086, 1204
HpyAV	CCTTC	3 cut(s)	119, 166, 1114
HpyCH4III	ACNGT	2 cut(s)	208, 305
HpyCH4V	TGCA	6 cut(s)	373, 456, 584, 656, 721, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	749, 1216
HpyF3I	CTNAG	5 cut(s)	57, 168, 906, 1131, 1213
HspAI	GCGC	1 cut(s)	650
Kzo9I	GATC	6 cut(s)	118, 901, 909, 1006, 1033, 1195
LmnI	GCTCC	3 cut(s)	52, 128, 163
Lsp1109I	GCAGC	4 cut(s)	761, 947, 1050, 1240
LweI	GCATC	3 cut(s)	241, 708, 736
MaeI	CTAG	4 cut(s)	351, 681, 827, 1089
MaeIII	GTNAC	4 cut(s)	289, 983, 1223, 1304
MalI	GATC	6 cut(s)	120, 903, 911, 1008, 1035, 1197
MboI	GATC	6 cut(s)	118, 901, 909, 1006, 1033, 1195
MboII	GAAGA	6 cut(s)	419, 545, 727, 1043, 1054, 1255
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	3 cut(s)	118, 909, 1033
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	7 cut(s)	298, 459, 585, 635, 696, 972, 996
MlyI	GAGTC	1 cut(s)	860
Mph1103I	ATGCAT	1 cut(s)	723
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	9 cut(s)	189, 395, 447, 774, 818, 861, 978, 1068, 1122
MspCI	CTTAAG	2 cut(s)	446, 977
MspI	CCGG	1 cut(s)	1207
MunI	CAATTG	1 cut(s)	585
MwoI	GCNNNNNNNGC	2 cut(s)	749, 1216
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	6 cut(s)	118, 901, 909, 1006, 1033, 1195
NlaIV	GGNNCC	4 cut(s)	7, 54, 165, 797
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	1223
NsiI	ATGCAT	1 cut(s)	723
NspV	TTCGAA	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	6 cut(s)	33, 141, 499, 592, 1099, 1179
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	4 cut(s)	751, 937, 1065, 1255
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
Psp124BI	GAGCTC	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	791
PspN4I	GGNNCC	4 cut(s)	7, 54, 165, 797
PspPI	GGNCC	1 cut(s)	400
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
PsuI	RGATCY	3 cut(s)	118, 909, 1033
RsaI	GTAC	5 cut(s)	41, 257, 541, 602, 1085
RsaNI	GTAC	5 cut(s)	40, 256, 540, 601, 1084
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	9 cut(s)	189, 395, 447, 774, 818, 861, 978, 1068, 1122
SatI	GCNGC	4 cut(s)	750, 936, 1064, 1254
Sau3AI	GATC	6 cut(s)	118, 901, 909, 1006, 1033, 1195
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	1 cut(s)	41
SchI	GAGTC	1 cut(s)	860
SduI	GDGCHC	1 cut(s)	133
SfaNI	GCATC	3 cut(s)	241, 708, 736
SfcI	CTRYAG	1 cut(s)	1257
SfuI	TTCGAA	1 cut(s)	157
SmlI	CTYRAG	3 cut(s)	446, 629, 977
SmoI	CTYRAG	3 cut(s)	446, 629, 977
Sse9I	AATT	7 cut(s)	298, 459, 585, 635, 696, 972, 996
SspI	AATATT	2 cut(s)	89, 325
SspMI	CTAG	4 cut(s)	351, 681, 827, 1089
SstI	GAGCTC	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	208, 305
TaqI	TCGA	4 cut(s)	36, 144, 157, 1182
TasI	AATT	7 cut(s)	298, 459, 585, 635, 696, 972, 996
TatI	WGTACW	2 cut(s)	39, 600
TfiI	GAWTC	6 cut(s)	33, 141, 499, 592, 1099, 1179
Tru1I	TTAA	9 cut(s)	189, 395, 447, 774, 818, 861, 978, 1068, 1122
Tru9I	TTAA	9 cut(s)	189, 395, 447, 774, 818, 861, 978, 1068, 1122
TscAI	CASTG	2 cut(s)	310, 743
TseFI	GTSAC	1 cut(s)	1223
TseI	GCWGC	4 cut(s)	749, 935, 1063, 1253
Tsp45I	GTSAC	1 cut(s)	1223
TspDTI	ATGAA	6 cut(s)	162, 506, 801, 1003, 1096, 1256
TspGWI	ACGGA	4 cut(s)	45, 620, 999, 1111
TspRI	CASTG	2 cut(s)	310, 743
Van91I	CCANNNNNTGG	1 cut(s)	872
Vha464I	CTTAAG	2 cut(s)	446, 977
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	2 cut(s)	459, 972
XmaJI	CCTAGG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	808
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	4 cut(s)	351, 681, 827, 1089
ZrmI	AGTACT	1 cut(s)	41
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.