MD11G1176300.v1.1

Cop9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
20838057 .. 20844266
6210 bp
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UTR
Exon/CDS
Intron
MD11G1176300.v1.1.491

Sequence Viewer

Length: 1320 bp
ATGGGCTCCGATGCTGATATGGAGGATTACGGATTCGAGTACTCGGATGAGGAACCTGAGGAACAGGACGTCGACATTGAGAACCAATATTACAACTCTAAAGGTTTGGTTGAGACAGATCCAGAAGGAGCACTTTCGGGATTCGATGAAGTTGTTCGCATGGAGCCTGAGAAGGCCGAGTGGGGATTTAAAGCCTTGAAGCAAACCGTGAAGCTCTATTATCGTCTGGGGAGGTATAAAGAAATGATGGATGCATACAGGGTGATGTTGACATACATCAAATCAGCAGTAACAAGGAATTACAGTGAAAAATGTATAAACAACATTATGGATTTTGTTTCTGGTTCAGCTAGTCAGAACTTTGGTCTCCTGCAAGAGTTCTATCAGACCACTCTAAAGGCCCTTGAAGAGGCAAAGAATGAGAGACTTTGGTTTAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGATATGGGTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTCCATAAATCCTGTCAAAAGGAAGATGGTACTGATGACCAAAAGAAAGGAAGTCAACTCCTAGAGGTTTACGCTATTGAGATTCAAATGTACACTGAGACTAAAAATAACAAAAAGCTTAAGCAATTATACCAAAAAGCTCTTGCAATCAAGTCAGCAATACCTCATCCTAGGATCATGGGAATAATTCGTGAGTGTGGGGGTAAGATGCATATGGCTGAGCGTCAGTGGGCAGATGCAGCCACAGATTTTTTTGAAGCCTTTAAGAACTACGATGAAGCTGGGAACCAGAGGCGTATACAATGCTTGAAGTACTTAGTTCTGGCTAATATGCTGATGGAGTCAGAAGTTAATCCATTTGATGGTCAAGAAGCAAAGCCGTATAAAAACGATCCTGAGATCTTGGCAATGACAAATCTGATTGCAGCGTATCAACGAAATGAGATACTGGAGTTTGAGAAAATTCTTAAGAGTAACAGGAGGACAATTATGGATGATCCATTCATTCGAAACTATATTGAAGATCTATTGAAGAATGTTAGGACACAAGTGCTGCTCAAACTTATCAAGCCGTACACGAGAATTCGGATTCCCTTCATATCAAAGGAACTTAATGTTCCGGAGAAAGATGTGGAGCAACTTTTGGTTTCACTTATATTGGATAACCGAATTGATGGACATATTGATCAGGTGAACCGGCTCTTAGAGCGTGGTGACAGGTCAAAGGGAATGAAGAAGTATGCTGCCGTAGATAAATGGAACACTCAGCTAAGGTCTCTTTACCAAACTATCAGTAACCGAGTATATTGA

Protein Analysis

440

Amino Acids

51.44

Weight (kDa)

6.05

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 326 - 406 1.6e-23 PCI domain
COPS2_C PF25983 414 - 438 1.6e-13 COP9 signalosome complex subunit 2, C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
AccB7I CCANNNNNTGG 1 cut(s) 872
AccI GTMKAC 2 cut(s) 72, 808
AccIII TCCGGA 1 cut(s) 1129
AclWI GGATC 4 cut(s) 113, 692, 896, 1001
AcsI RAATTY 3 cut(s) 459, 972, 1092
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 5 cut(s) 41, 541, 602, 824, 1085
AfiI CCNNNNNNNGG 2 cut(s) 409, 872
AflII CTTAAG 3 cut(s) 446, 629, 977
AgsI TTSAA 8 cut(s) 199, 407, 505, 596, 767, 820, 1031, 1042
AluBI AGCT 7 cut(s) 214, 350, 451, 628, 650, 791, 1279
AluI AGCT 7 cut(s) 214, 350, 451, 628, 650, 791, 1279
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 5 cut(s) 107, 371, 418, 602, 1290
AlwI GGATC 4 cut(s) 113, 692, 896, 1001
Aor13HI TCCGGA 1 cut(s) 1129
AoxI GGCC 2 cut(s) 174, 399
ApeKI GCWGC 4 cut(s) 749, 935, 1063, 1253
ApoI RAATTY 3 cut(s) 459, 972, 1092
Asp700I GAANNNNTTC 1 cut(s) 153
AspA2I CCTAGG 1 cut(s) 680
AspS9I GGNCC 1 cut(s) 400
AsuHPI GGTGA 4 cut(s) 274, 488, 1213, 1235
AsuII TTCGAA 1 cut(s) 1018
AvrII CCTAGG 1 cut(s) 680
AxyI CCTNAGG 1 cut(s) 57
BaeI ACNNNNGTAYC 2 cut(s) 947, 980
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 1087
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 4 cut(s) 761, 947, 1050, 1240
BccI CCATC 5 cut(s) 241, 530, 841, 866, 1178
BceAI ACGGC 3 cut(s) 874, 1066, 1241
BclI TGATCA 1 cut(s) 1195
BcoDI GTCTC 5 cut(s) 107, 371, 418, 602, 1290
BfaI CTAG 3 cut(s) 351, 572, 681
BfrI CTTAAG 3 cut(s) 446, 629, 977
BglII AGATCT 2 cut(s) 909, 1033
BisI GCNGC 4 cut(s) 750, 936, 1064, 1254
BlnI CCTAGG 1 cut(s) 680
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 4 cut(s) 751, 937, 1065, 1255
BmcAI AGTACT 2 cut(s) 41, 824
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 4 cut(s) 7, 54, 165, 797
BmsI GCATC 3 cut(s) 241, 708, 736
BpmI CTGGAG 1 cut(s) 980
Bpu10I CCTNAGC 1 cut(s) 1280
Bpu1102I GCTNAGC 1 cut(s) 729
Bpu14I TTCGAA 1 cut(s) 1018
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 2 cut(s) 371, 1290
BsaJI CCNNGG 1 cut(s) 680
BsaWI WCCGGW 1 cut(s) 1129
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 872
Bse118I RCCGGY 1 cut(s) 1206
Bse1I ACTGG 1 cut(s) 963
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 924
BseAI TCCGGA 1 cut(s) 1129
BseDI CCNNGG 1 cut(s) 680
BseGI GGATG 4 cut(s) 52, 256, 676, 1009
BseLI CCNNNNNNNGG 2 cut(s) 409, 872
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 6 cut(s) 48, 159, 597, 720, 897, 1289
BseNI ACTGG 1 cut(s) 963
BseXI GCAGC 4 cut(s) 761, 947, 1050, 1240
BseYI CCCAGC 1 cut(s) 791
BshFI GGCC 2 cut(s) 176, 401
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 1130, 1207
BslI CCNNNNNNNGG 2 cut(s) 409, 872
BsmAI GTCTC 5 cut(s) 107, 371, 418, 602, 1290
BsnI GGCC 2 cut(s) 176, 401
Bso31I GGTCTC 2 cut(s) 371, 1290
Bsp119I TTCGAA 1 cut(s) 1018
Bsp1286I GDGCHC 2 cut(s) 8, 133
Bsp13I TCCGGA 1 cut(s) 1129
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 7 cut(s) 118, 684, 901, 909, 1006, 1033, 1195
Bsp1720I GCTNAGC 1 cut(s) 729
BspANI GGCC 2 cut(s) 176, 401
BspCNI CTCAG 6 cut(s) 49, 160, 598, 721, 898, 1288
BspEI TCCGGA 1 cut(s) 1129
BspLI GGNNCC 4 cut(s) 7, 54, 165, 797
BspPI GGATC 4 cut(s) 113, 692, 896, 1001
BspT104I TTCGAA 1 cut(s) 1018
BspTI CTTAAG 3 cut(s) 446, 629, 977
BspTNI GGTCTC 2 cut(s) 371, 1290
BsrDI GCAATG 1 cut(s) 924
BsrFI RCCGGY 1 cut(s) 1206
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 963
BssAI RCCGGY 1 cut(s) 1206
BssECI CCNNGG 1 cut(s) 680
BssMI GATC 7 cut(s) 118, 684, 901, 909, 1006, 1033, 1195
BssNAI GTATAC 1 cut(s) 809
BssNI GRCGYC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 1087
BssT1I CCWWGG 1 cut(s) 680
Bst1107I GTATAC 1 cut(s) 809
Bst2BI CACGAG 1 cut(s) 1087
Bst4CI ACNGT 2 cut(s) 208, 305
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 69
BstAFI CTTAAG 3 cut(s) 446, 629, 977
BstAUI TGTACA 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 1018
BstDEI CTNAG 9 cut(s) 57, 168, 606, 729, 826, 906, 1213, 1275, 1280
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 4 cut(s) 52, 256, 676, 1009
BstKTI GATC 7 cut(s) 121, 687, 904, 912, 1009, 1036, 1198
BstMAI GTCTC 5 cut(s) 107, 371, 418, 602, 1290
BstMBI GATC 7 cut(s) 118, 684, 901, 909, 1006, 1033, 1195
BstMWI GCNNNNNNNGC 2 cut(s) 749, 1216
BstV1I GCAGC 4 cut(s) 761, 947, 1050, 1240
BstX2I RGATCY 3 cut(s) 118, 909, 1033
BstYI RGATCY 3 cut(s) 118, 909, 1033
BstZ17I GTATAC 1 cut(s) 809
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 176, 401
BtsCI GGATG 4 cut(s) 52, 256, 676, 1009
BtsIMutI CAGTG 3 cut(s) 310, 603, 743
Cfr10I RCCGGY 1 cut(s) 1206
Cfr13I GGNCC 1 cut(s) 400
CseI GACGC 1 cut(s) 722
Csp6I GTAC 5 cut(s) 40, 540, 601, 823, 1084
CviAII CATG 2 cut(s) 160, 688
CviQI GTAC 5 cut(s) 40, 540, 601, 823, 1084
DdeI CTNAG 9 cut(s) 57, 168, 606, 729, 826, 906, 1213, 1275, 1280
DpnI GATC 7 cut(s) 120, 686, 903, 911, 1008, 1035, 1197
DpnII GATC 7 cut(s) 118, 684, 901, 909, 1006, 1033, 1195
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 680
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 371, 1290
Eco81I CCTNAGG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 1092
EcoT14I CCWWGG 1 cut(s) 680
EcoT22I ATGCAT 2 cut(s) 256, 723
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 680
FaeI CATG 2 cut(s) 163, 691
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 2 cut(s) 159, 687
FauNDI CATATG 1 cut(s) 723
FbaI TGATCA 1 cut(s) 1195
FblI GTMKAC 2 cut(s) 72, 808
Fnu4HI GCNGC 4 cut(s) 750, 936, 1064, 1254
FokI GGATG 4 cut(s) 59, 263, 663, 1016
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 750, 936, 1064, 1254
FspBI CTAG 3 cut(s) 351, 572, 681
GluI GCNGC 4 cut(s) 750, 936, 1064, 1254
GsaI CCCAGC 1 cut(s) 795
GsuI CTGGAG 1 cut(s) 980
HaeIII GGCC 2 cut(s) 176, 401
HapII CCGG 2 cut(s) 1130, 1207
HgaI GACGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 2 cut(s) 163, 691
HincII GTYRAC 3 cut(s) 73, 270, 566
HindII GTYRAC 3 cut(s) 73, 270, 566
HindIII AAGCTT 2 cut(s) 449, 626
HinfI GANTC 5 cut(s) 33, 141, 592, 851, 1099
HpaII CCGG 2 cut(s) 1130, 1207
HphI GGTGA 4 cut(s) 274, 488, 1213, 1235
Hpy166II GTNNAC 8 cut(s) 73, 270, 566, 580, 603, 809, 1086, 1204
Hpy188I TCNGA 7 cut(s) 10, 46, 357, 387, 856, 930, 1098
Hpy188III TCNNGA 6 cut(s) 122, 138, 701, 878, 905, 1130
Hpy8I GTNNAC 8 cut(s) 73, 270, 566, 580, 603, 809, 1086, 1204
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 119, 166, 499, 1114
HpyCH4III ACNGT 2 cut(s) 208, 305
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 7 cut(s) 254, 373, 456, 656, 721, 749, 935
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 1216
HpyF3I CTNAG 9 cut(s) 57, 168, 606, 729, 826, 906, 1213, 1275, 1280
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 2 cut(s) 163, 691
Kpn2I TCCGGA 1 cut(s) 1129
Ksp22I TGATCA 1 cut(s) 1195
Kzo9I GATC 7 cut(s) 118, 684, 901, 909, 1006, 1033, 1195
LmnI GCTCC 4 cut(s) 11, 128, 163, 1144
Lsp1109I GCAGC 4 cut(s) 761, 947, 1050, 1240
LweI GCATC 3 cut(s) 241, 708, 736
MaeI CTAG 3 cut(s) 351, 572, 681
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 4 cut(s) 289, 983, 1223, 1304
MalI GATC 7 cut(s) 120, 686, 903, 911, 1008, 1035, 1197
MboI GATC 7 cut(s) 118, 684, 901, 909, 1006, 1033, 1195
MboII GAAGA 5 cut(s) 419, 545, 1043, 1054, 1255
MflI RGATCY 3 cut(s) 118, 909, 1033
MhlI GDGCHC 2 cut(s) 8, 133
MluCI AATT 8 cut(s) 298, 459, 635, 696, 972, 996, 1092, 1179
MlyI GAGTC 1 cut(s) 860
MnlI CCTC 9 cut(s) 16, 43, 52, 225, 403, 568, 684, 795, 984
Mph1103I ATGCAT 2 cut(s) 256, 723
MroI TCCGGA 1 cut(s) 1129
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 8 cut(s) 189, 435, 447, 630, 774, 861, 978, 1122
MspCI CTTAAG 3 cut(s) 446, 629, 977
MspI CCGG 2 cut(s) 1130, 1207
MwoI GCNNNNNNNGC 2 cut(s) 749, 1216
NdeI CATATG 1 cut(s) 723
NdeII GATC 7 cut(s) 118, 684, 901, 909, 1006, 1033, 1195
NlaIII CATG 2 cut(s) 163, 691
NlaIV GGNNCC 4 cut(s) 7, 54, 165, 797
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 1223
NsiI ATGCAT 2 cut(s) 256, 723
NspV TTCGAA 1 cut(s) 1018
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 4 cut(s) 33, 141, 592, 1099
PflMI CCANNNNNTGG 1 cut(s) 872
PkrI GCNGC 4 cut(s) 751, 937, 1065, 1255
PleI GAGTC 1 cut(s) 859
PpsI GAGTC 1 cut(s) 859
PspFI CCCAGC 1 cut(s) 791
PspN4I GGNNCC 4 cut(s) 7, 54, 165, 797
PspPI GGNCC 1 cut(s) 400
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
PsuI RGATCY 3 cut(s) 118, 909, 1033
RsaI GTAC 5 cut(s) 41, 541, 602, 824, 1085
RsaNI GTAC 5 cut(s) 40, 540, 601, 823, 1084
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 8 cut(s) 189, 435, 447, 630, 774, 861, 978, 1122
SatI GCNGC 4 cut(s) 750, 936, 1064, 1254
Sau3AI GATC 7 cut(s) 118, 684, 901, 909, 1006, 1033, 1195
Sau96I GGNCC 1 cut(s) 400
ScaI AGTACT 2 cut(s) 41, 824
SchI GAGTC 1 cut(s) 860
SduI GDGCHC 2 cut(s) 8, 133
SfaNI GCATC 3 cut(s) 241, 708, 736
SfuI TTCGAA 1 cut(s) 1018
SmlI CTYRAG 3 cut(s) 446, 629, 977
SmoI CTYRAG 3 cut(s) 446, 629, 977
Sse9I AATT 8 cut(s) 298, 459, 635, 696, 972, 996, 1092, 1179
SspI AATATT 1 cut(s) 89
SspMI CTAG 3 cut(s) 351, 572, 681
StyI CCWWGG 1 cut(s) 680
TaaI ACNGT 2 cut(s) 208, 305
TaiI ACGT 1 cut(s) 72
TaqI TCGA 4 cut(s) 36, 72, 144, 1018
TasI AATT 8 cut(s) 298, 459, 635, 696, 972, 996, 1092, 1179
TatI WGTACW 3 cut(s) 39, 600, 822
TfiI GAWTC 4 cut(s) 33, 141, 592, 1099
Tru1I TTAA 8 cut(s) 189, 435, 447, 630, 774, 861, 978, 1122
Tru9I TTAA 8 cut(s) 189, 435, 447, 630, 774, 861, 978, 1122
TscAI CASTG 3 cut(s) 310, 610, 743
TseFI GTSAC 1 cut(s) 1223
TseI GCWGC 4 cut(s) 749, 935, 1063, 1253
Tsp45I GTSAC 1 cut(s) 1223
TspDTI ATGAA 5 cut(s) 162, 801, 1003, 1096, 1256
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 3 cut(s) 310, 610, 743
Van91I CCANNNNNTGG 1 cut(s) 872
Vha464I CTTAAG 3 cut(s) 446, 629, 977
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 3 cut(s) 459, 972, 1092
XmaJI CCTAGG 1 cut(s) 680
XmiI GTMKAC 2 cut(s) 72, 808
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 3 cut(s) 351, 572, 681
ZraI GACGTC 1 cut(s) 70
ZrmI AGTACT 2 cut(s) 41, 824
Zsp2I ATGCAT 2 cut(s) 256, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.