Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

12334019 .. 12334788

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28755.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAGAGTAAACATGATGGAAGGTCTAAAGCGTCTGATGGCAGGAGACAAATCCGGACCGATCAACATAGGCAATCCAGGTGAATTCTCAATTGTTGAGCTCGCTGAAACGGTTAAAGCGCTTATTAAACCGGACGTGGAGATAAAGATTGTGGAGAACATACCAGATGATCCGAGGCAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008460 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0012505 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0016835 GO:0016836 GO:0018130 GO:0019305 GO:0019321 GO:0019438 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034641 GO:0034654 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046383 GO:0046483 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0055086 GO:0070403 GO:0071704 GO:0071944 GO:0097159 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

61

Amino Acids

6.71

Weight (kDa)

4.93

Isoelectric Point (pI)

24.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	53
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	83
AfeI	AGCGCT	1 cut(s)	120
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	100, 183
AluI	AGCT	2 cut(s)	100, 183
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	164
Aor13HI	TCCGGA	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BccI	CCATC	2 cut(s)	10, 31
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	2 cut(s)	53, 130
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	54, 131
BsmAI	GTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	60, 169
BspEI	TCCGGA	1 cut(s)	53
BspPI	GGATC	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	60, 169
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	63, 172
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	60, 169
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	56
CpoI	CGGWCCG	1 cut(s)	56
CseI	GACGC	1 cut(s)	20
CspI	CGGWCCG	1 cut(s)	56
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	2 cut(s)	100, 183
CviKI_1	RGCY	2 cut(s)	100, 183
DpnI	GATC	2 cut(s)	62, 171
DpnII	GATC	2 cut(s)	60, 169
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	56
Eco47III	AGCGCT	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	16
FaiI	YATR	3 cut(s)	14, 68, 161
FatI	CATG	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	102
GlaI	GCGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	122
HapII	CCGG	2 cut(s)	54, 131
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HpaII	CCGG	2 cut(s)	54, 131
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	36, 174
Hpy188III	TCNNGA	1 cut(s)	54
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	60, 169
LpnPI	CCDG	6 cut(s)	27, 63, 67, 90, 144, 177
MaeII	ACGT	1 cut(s)	135
MalI	GATC	2 cut(s)	62, 171
MboI	GATC	2 cut(s)	60, 169
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	83, 90
MnlI	CCTC	1 cut(s)	168
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	2 cut(s)	114, 126
MspI	CCGG	2 cut(s)	54, 131
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	60, 169
NlaIII	CATG	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	56
Rsr2I	CGGWCCG	1 cut(s)	56
RsrII	CGGWCCG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	114, 126
Sau3AI	GATC	2 cut(s)	60, 169
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	5 cut(s)	25, 82, 102, 138, 185
SgeI	CNNG	9 cut(s)	25, 54, 66, 89, 90, 113, 143, 148, 176
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	2 cut(s)	83, 90
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	2 cut(s)	83, 90
Tru1I	TTAA	2 cut(s)	114, 126
Tru9I	TTAA	2 cut(s)	114, 126
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.