Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

15107405 .. 15109432

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAAAACGAAAAGAATGAGGTGATTGTTGCGGATAATTACTTCACTGGCTCCAAGGACAACCTGAAGAAATGGATCGGTCATCCAAGATTTGAACTCATTCGTCATGATGTCACAGAGCCTCTGCTAATTGAGGTTGATCAAATATACCATCTTGCCTGTCCTGCTTCTCCGATCTTCTACAAGCACAATCCTGTAAAGACAATAAAGACAAATGTGATCGGTACATTGAACATGCTGGGACTTGCCAAGCGAGTCGGAGCAAGGATTTTGCTTACATCTACTTCCGAGGTGTACGGAGATCCTCTTATTCACCCCCAGACTGAGAGCTACTGGGGAAATGTGAACCCCATTGGAGTTAGGAGTTGCTATGATGAGGGAAAGCGAGTTGCTGAAACCTTGATGTTTGATTATCACAGGCAGCATGGCATAGAGATAAGGATTGCTAGGATCTTCAACACTTATGGGCCTCGCATGAATATTGATGATGGTCGTGTTGTCAGTAATTTCATCGCCCAAGCTATCCGTAATGATCCCTTGACTGTTCAAGCGCCTGGGACTCAGACGCGGAGTTTCTGCTATGTGTCTGACATGGTTGATGGCCTCATTCGACTTATGCAAGGAGACAACACAGGACCGATCAACATTGGCAATCCAGGTGAATTTACAATGCTTGAACTTGCAGAGAATGTCAAGGAGCTTATCAATCCTAAGTTAGAGATCATAATGGTTGAAAACACACCCGATCGATCCTCGCCAGAGGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

257

Amino Acids

28.9

Weight (kDa)

5.54

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	568
AciI	CCGC	2 cut(s)	32, 568
AclWI	GGATC	5 cut(s)	83, 296, 458, 527, 744
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	226, 296
AgsI	TTSAA	6 cut(s)	95, 232, 457, 548, 677, 734
AjnI	CCWGG	2 cut(s)	553, 655
AluBI	AGCT	3 cut(s)	330, 521, 700
AluI	AGCT	3 cut(s)	330, 521, 700
Alw26I	GTCTC	1 cut(s)	618
AlwI	GGATC	5 cut(s)	83, 296, 458, 527, 744
AoxI	GGCC	2 cut(s)	467, 601
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	1 cut(s)	662
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	2 cut(s)	467, 635
AsuHPI	GGTGA	3 cut(s)	34, 305, 671
AvaII	GGWCC	1 cut(s)	635
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	3 cut(s)	159, 482, 593
BciT130I	CCWGG	2 cut(s)	555, 657
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	618
BfaI	CTAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	554
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	2 cut(s)	555, 657
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	467, 635
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	2 cut(s)	555, 657
BmrI	ACTGGG	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	748
BsaJI	CCNNGG	3 cut(s)	54, 288, 554
Bse1I	ACTGG	2 cut(s)	52, 338
BseBI	CCWGG	2 cut(s)	555, 657
BseCI	ATCGAT	1 cut(s)	748
BseDI	CCNNGG	3 cut(s)	54, 288, 554
BseGI	GGATG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	315, 575
BseNI	ACTGG	2 cut(s)	52, 338
BseXI	GCAGC	1 cut(s)	433
BseYI	CCCAGC	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	568
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	2 cut(s)	469, 603
BshVI	ATCGAT	1 cut(s)	748
BsiEI	CGRYCG	1 cut(s)	748
BslFI	GGGAC	2 cut(s)	255, 571
BsmAI	GTCTC	1 cut(s)	618
BsmFI	GGGAC	2 cut(s)	255, 571
BsnI	GGCC	2 cut(s)	469, 603
BspACI	CCGC	2 cut(s)	32, 568
BspANI	GGCC	2 cut(s)	469, 603
BspCNI	CTCAG	2 cut(s)	316, 574
BspDI	ATCGAT	1 cut(s)	748
BspFNI	CGCG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	5 cut(s)	83, 296, 458, 527, 744
BsrI	ACTGG	2 cut(s)	52, 338
BssECI	CCNNGG	3 cut(s)	54, 288, 554
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	555, 657
Bst4CI	ACNGT	1 cut(s)	544
BstDEI	CTNAG	3 cut(s)	324, 561, 711
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	568
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	553
BstMAI	GTCTC	1 cut(s)	618
BstMCI	CGRYCG	1 cut(s)	748
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	555, 657
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	553, 655
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	301, 450
BstYI	RGATCY	2 cut(s)	301, 450
Bsu15I	ATCGAT	1 cut(s)	748
BsuRI	GGCC	2 cut(s)	469, 603
BsuTUI	ATCGAT	1 cut(s)	748
BtgZI	GCGATG	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	45
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	467, 635
ClaI	ATCGAT	1 cut(s)	748
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	225, 295
CviAII	CATG	5 cut(s)	107, 235, 425, 475, 592
CviJI	RGCY	8 cut(s)	51, 121, 330, 469, 521, 603, 700, 767
CviKI_1	RGCY	8 cut(s)	51, 121, 330, 469, 521, 603, 700, 767
CviQI	GTAC	2 cut(s)	225, 295
DdeI	CTNAG	3 cut(s)	324, 561, 711
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	553, 655
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	5 cut(s)	110, 238, 428, 478, 595
FaqI	GGGAC	2 cut(s)	255, 571
FatI	CATG	5 cut(s)	106, 234, 424, 474, 591
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	422
GsaI	CCCAGC	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	2 cut(s)	469, 603
HgaI	GACGC	1 cut(s)	574
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	5 cut(s)	110, 238, 428, 478, 595
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HinfI	GANTC	2 cut(s)	255, 559
HphI	GGTGA	3 cut(s)	34, 305, 671
Hpy166II	GTNNAC	2 cut(s)	295, 346
Hpy188I	TCNGA	5 cut(s)	174, 260, 289, 564, 589
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	2 cut(s)	295, 346
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	2 cut(s)	619, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	3 cut(s)	324, 561, 711
Hsp92II	CATG	5 cut(s)	110, 238, 428, 478, 595
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	139
LmnI	GCTCC	3 cut(s)	56, 260, 697
Lsp1109I	GCAGC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	1 cut(s)	112
MboII	GAAGA	3 cut(s)	79, 169, 445
MflI	RGATCY	2 cut(s)	301, 450
MluCI	AATT	4 cut(s)	37, 129, 505, 662
MlyI	GAGTC	2 cut(s)	264, 553
MmeI	TCCRAC	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	555, 657
MvaI	CCWGG	2 cut(s)	555, 657
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	1 cut(s)	164
NlaIII	CATG	5 cut(s)	110, 238, 428, 478, 595
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	423
Ple19I	CGATCG	1 cut(s)	748
PleI	GAGTC	2 cut(s)	263, 553
PpsI	GAGTC	2 cut(s)	263, 553
Psp6I	CCWGG	2 cut(s)	553, 655
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	2 cut(s)	553, 655
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	2 cut(s)	467, 635
PsuI	RGATCY	2 cut(s)	301, 450
PvuI	CGATCG	1 cut(s)	748
RsaI	GTAC	2 cut(s)	226, 296
RsaNI	GTAC	2 cut(s)	225, 295
SatI	GCNGC	1 cut(s)	422
Sau96I	GGNCC	2 cut(s)	467, 635
SchI	GAGTC	2 cut(s)	264, 553
ScrFI	CCNGG	2 cut(s)	555, 657
SetI	ASST	9 cut(s)	24, 66, 138, 294, 332, 401, 523, 661, 702
SinI	GGWCC	1 cut(s)	635
Sse9I	AATT	4 cut(s)	37, 129, 505, 662
SsiI	CCGC	2 cut(s)	32, 568
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	553, 655
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	2 cut(s)	610, 748
TaqII	GACCGA	2 cut(s)	68, 652
TasI	AATT	4 cut(s)	37, 129, 505, 662
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	491, 499
TspGWI	ACGGA	2 cut(s)	312, 515
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.