Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

44837084 .. 44838591

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0329600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTCATTTTCGGGTCCAAAATACAAGTACGATTAATAAATGTGCCCCGCTGGCCTGGACCTCCTCCTCAGCTGAGGTTCGATATCGCCGCCACCGCAGCTGACCTGAGGCACAAGGTCTGCTTCAATGTGCAATTTCAAGCCGGTTGTATAGATCTCTTCCAACTTGGCAATTCCCAGAATAAGGAAAGTTGTACAAGCATATCCGCAGATAGGCATATTTTTCATAGCACAGTGTCGCAAGTAGATACAGGACAACCGGTACCAATATTGGAGGAGGGAGAAGGGACTCTGGTCATACTACGTCTTTTCAAACAAAGCCGCTTTTGGTATGATAATCCACGAGACTTCACACAGGATGGCGAACCAACCCTCGTAGATGAAGAGATACTTCTTGTCCAACCTGGCCCAGCCAAGTTTATTGCTGAGCGTCTTTTGCGTATGGGTGTCCCACCAGAAGAACATGAAGCTATTCTTCTGAAATTTCTTCAGAAGTATCTTGTAGATATTGACGACATCACCCATTATGTCCTATATACTGTGAATATATTGGACATCAGTGTGTCCTTGTTGGGTAGTGCTGACTATCATGAGATCGTTGATTGGGCGGCAGAAGAAAACATCGTATTTGAGGACCATTGGGGTACAAATAAGCTCAAATTTATTCCTGCAAGTAGATCTTGGATCATGAGTTTGAAGAAAATAAAACTTGATACTTTGGAAGTAGATCTTGGATCATGTGCTATTTGTCTCGACGACGTTGCAAAATGTGATGATCAACTGGTTACTACCTTACCCTGTAAACACCATATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

272

Amino Acids

30.83

Weight (kDa)

5.07

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	262
AccB1I	GGYRCC	1 cut(s)	262
AciI	CCGC	6 cut(s)	49, 90, 96, 207, 322, 608
AclWI	GGATC	2 cut(s)	692, 742
AcsI	RAATTY	2 cut(s)	482, 659
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	4 cut(s)	30, 196, 264, 646
AfiI	CCNNNNNNNGG	2 cut(s)	184, 213
AgeI	ACCGGT	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	127, 140, 313, 697
AjnI	CCWGG	2 cut(s)	55, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	714, 746
AluBI	AGCT	4 cut(s)	73, 101, 470, 655
AluI	AGCT	4 cut(s)	73, 101, 470, 655
Alw26I	GTCTC	2 cut(s)	339, 755
AlwI	GGATC	2 cut(s)	692, 742
AoxI	GGCC	2 cut(s)	53, 406
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	482, 659
AseI	ATTAAT	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	259
Asp700I	GAANNNNTTC	1 cut(s)	471
Asp718I	GGTACC	1 cut(s)	262
AspS9I	GGNCC	4 cut(s)	15, 59, 407, 634
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	3 cut(s)	15, 59, 634
AxyI	CCTNAGG	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	342
BbvCI	CCTCAGC	2 cut(s)	69, 74
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	2 cut(s)	57, 405
BclI	TGATCA	1 cut(s)	775
BcoDI	GTCTC	2 cut(s)	339, 755
BglI	GCCNNNNNGGC	1 cut(s)	52
BglII	AGATCT	3 cut(s)	154, 677, 727
BisI	GCNGC	4 cut(s)	90, 99, 322, 609
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	4 cut(s)	91, 100, 323, 610
Bme1390I	CCNGG	2 cut(s)	57, 405
Bme18I	GGWCC	3 cut(s)	15, 59, 634
BmgT120I	GGNCC	4 cut(s)	15, 59, 407, 634
BmiI	GGNNCC	2 cut(s)	16, 264
BmrFI	CCNGG	2 cut(s)	57, 405
BoxI	GACNNNNGTC	1 cut(s)	293
Bpu10I	CCTNAGC	2 cut(s)	69, 74
Bpu1102I	GCTNAGC	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 213
Bse118I	RCCGGY	2 cut(s)	143, 259
Bse1I	ACTGG	1 cut(s)	786
Bse21I	CCTNAGG	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	57, 405
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	184, 213
BseMII	CTCAG	4 cut(s)	65, 83, 98, 417
BseNI	ACTGG	1 cut(s)	786
BseRI	GAGGAG	3 cut(s)	54, 57, 290
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	409
BshFI	GGCC	2 cut(s)	55, 408
BshNI	GGYRCC	1 cut(s)	262
BshTI	ACCGGT	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	144, 260
BslFI	GGGAC	2 cut(s)	301, 434
BslI	CCNNNNNNNGG	2 cut(s)	184, 213
BsmAI	GTCTC	2 cut(s)	339, 755
BsmFI	GGGAC	2 cut(s)	301, 434
BsnI	GGCC	2 cut(s)	55, 408
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	194
Bsp143I	GATC	7 cut(s)	154, 594, 677, 684, 727, 734, 775
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	6 cut(s)	49, 90, 96, 207, 322, 608
BspANI	GGCC	2 cut(s)	55, 408
BspCNI	CTCAG	4 cut(s)	66, 82, 99, 418
BspHI	TCATGA	2 cut(s)	589, 687
BspLI	GGNNCC	2 cut(s)	16, 264
BspPI	GGATC	2 cut(s)	692, 742
BspT107I	GGYRCC	1 cut(s)	262
BsrFI	RCCGGY	2 cut(s)	143, 259
BsrGI	TGTACA	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	786
BssAI	RCCGGY	2 cut(s)	143, 259
BssMI	GATC	7 cut(s)	154, 594, 677, 684, 727, 734, 775
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	57, 405
Bst4CI	ACNGT	2 cut(s)	235, 541
Bst6I	CTCTTC	2 cut(s)	164, 378
BstAUI	TGTACA	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	4 cut(s)	69, 74, 107, 426
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	7 cut(s)	157, 597, 680, 687, 730, 737, 778
BstMAI	GTCTC	2 cut(s)	339, 755
BstMBI	GATC	7 cut(s)	154, 594, 677, 684, 727, 734, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 95, 98, 436
BstNI	CCWGG	2 cut(s)	57, 405
BstPAI	GACNNNNGTC	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	55, 403
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	3 cut(s)	154, 677, 727
BstYI	RGATCY	3 cut(s)	154, 677, 727
Bsu36I	CCTNAGG	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	55, 408
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	240, 565
Cac8I	GCNNGC	1 cut(s)	53
CciI	TCATGA	2 cut(s)	589, 687
Cfr10I	RCCGGY	2 cut(s)	143, 259
Cfr13I	GGNCC	4 cut(s)	15, 59, 407, 634
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	4 cut(s)	29, 195, 263, 645
CspAI	ACCGGT	1 cut(s)	259
CviAII	CATG	5 cut(s)	464, 590, 688, 738, 814
CviJI	RGCY	9 cut(s)	55, 73, 101, 143, 321, 408, 413, 470, 655
CviKI_1	RGCY	9 cut(s)	55, 73, 101, 143, 321, 408, 413, 470, 655
CviQI	GTAC	4 cut(s)	29, 195, 263, 645
DdeI	CTNAG	4 cut(s)	69, 74, 107, 426
DpnI	GATC	7 cut(s)	156, 596, 679, 686, 729, 736, 777
DpnII	GATC	7 cut(s)	154, 594, 677, 684, 727, 734, 775
Eam1104I	CTCTTC	2 cut(s)	164, 378
EarI	CTCTTC	2 cut(s)	164, 378
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	3 cut(s)	15, 59, 634
Eco57I	CTGAAG	1 cut(s)	473
Eco81I	CCTNAGG	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	55, 403
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	5 cut(s)	467, 593, 691, 741, 817
FaqI	GGGAC	2 cut(s)	301, 434
FatI	CATG	5 cut(s)	463, 589, 687, 737, 813
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	4 cut(s)	90, 99, 322, 609
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	4 cut(s)	90, 99, 322, 609
GluI	GCNGC	4 cut(s)	90, 99, 322, 609
GsaI	CCCAGC	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	55, 408
HapII	CCGG	2 cut(s)	144, 260
HgaI	GACGC	1 cut(s)	419
Hin1II	CATG	5 cut(s)	467, 593, 691, 741, 817
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	144, 260
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	803
Hpy188I	TCNGA	2 cut(s)	480, 492
Hpy188III	TCNNGA	3 cut(s)	590, 688, 752
Hpy8I	GTNNAC	1 cut(s)	803
Hpy99I	CGWCG	2 cut(s)	758, 761
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	235, 541
HpyCH4IV	ACGT	2 cut(s)	304, 759
HpyCH4V	TGCA	3 cut(s)	133, 671, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 95, 98, 436
HpyF3I	CTNAG	4 cut(s)	69, 74, 107, 426
HpySE526I	ACGT	2 cut(s)	304, 759
Hsp92II	CATG	5 cut(s)	467, 593, 691, 741, 817
KpnI	GGTACC	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	7 cut(s)	154, 594, 677, 684, 727, 734, 775
Lsp1109I	GCAGC	1 cut(s)	110
MaeII	ACGT	2 cut(s)	304, 759
MaeIII	GTNAC	1 cut(s)	784
MalI	GATC	7 cut(s)	156, 596, 679, 686, 729, 736, 777
MboI	GATC	7 cut(s)	154, 594, 677, 684, 727, 734, 775
MboII	GAAGA	7 cut(s)	151, 395, 467, 470, 479, 626, 709
MflI	RGATCY	3 cut(s)	154, 677, 727
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	4 cut(s)	134, 172, 482, 659
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	187, 424
MnlI	CCTC	9 cut(s)	69, 72, 75, 78, 102, 268, 271, 383, 625
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	3 cut(s)	51, 73, 101
MspI	CCGG	2 cut(s)	144, 260
MspR9I	CCNGG	2 cut(s)	57, 405
MvaI	CCWGG	2 cut(s)	57, 405
MwoI	GCNNNNNNNGC	4 cut(s)	52, 95, 98, 436
NdeII	GATC	7 cut(s)	154, 594, 677, 684, 727, 734, 775
NlaIII	CATG	5 cut(s)	467, 593, 691, 741, 817
NlaIV	GGNNCC	2 cut(s)	16, 264
PagI	TCATGA	2 cut(s)	589, 687
PdmI	GAANNNNTTC	1 cut(s)	471
PinAI	ACCGGT	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	91, 100, 323, 610
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PshAI	GACNNNNGTC	1 cut(s)	293
PshBI	ATTAAT	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	55, 403
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	2 cut(s)	55, 403
PspN4I	GGNNCC	2 cut(s)	16, 264
PspPI	GGNCC	4 cut(s)	15, 59, 407, 634
PsuI	RGATCY	3 cut(s)	154, 677, 727
PvuII	CAGCTG	2 cut(s)	73, 101
RsaI	GTAC	4 cut(s)	30, 196, 264, 646
RsaNI	GTAC	4 cut(s)	29, 195, 263, 645
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	4 cut(s)	90, 99, 322, 609
Sau3AI	GATC	7 cut(s)	154, 594, 677, 684, 727, 734, 775
Sau96I	GGNCC	4 cut(s)	15, 59, 407, 634
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	57, 405
SduI	GDGCHC	1 cut(s)	48
SinI	GGWCC	3 cut(s)	15, 59, 634
SmiMI	CAYNNNNRTG	1 cut(s)	560
Sse9I	AATT	4 cut(s)	134, 172, 482, 659
SsiI	CCGC	6 cut(s)	49, 90, 96, 207, 322, 608
SspI	AATATT	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	55, 403
TaaI	ACNGT	2 cut(s)	235, 541
TaiI	ACGT	2 cut(s)	307, 762
TaqI	TCGA	2 cut(s)	81, 753
TasI	AATT	4 cut(s)	134, 172, 482, 659
TatI	WGTACW	1 cut(s)	194
TauI	GCSGC	3 cut(s)	92, 324, 611
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	2 cut(s)	240, 565
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	215, 396, 480
TspRI	CASTG	2 cut(s)	240, 565
VpaK11BI	GGWCC	3 cut(s)	15, 59, 634
VspI	ATTAAT	1 cut(s)	35
XapI	RAATTY	2 cut(s)	482, 659
XmnI	GAANNNNTTC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.