Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

20824452 .. 20826530

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAAACGAAAAGAATGAGGTGATTGTTGCGGATAATTACTTCACTGGCTCAAAGGACAACCTGAAGAAATGGATCGGTCATCCAAGATTTGAACTCATTCGTCATGATGTCACAGAGCCTCTGCTAATTGAGGTTGACCAAATATACCATCTTGCCTGCCCTGCTTCCCCGATCTTCTACAAGTACAATCCTGTAAAGACAATAAAGACAAATGTGATTGGTACATTGAACATGCTGGGACTTGCCAAGCGAGTCGGAGCAAGGATTTTGCTTACATCTACTTCGGAGGTGTATGGAGATCCTCTCATTCACCCCCAGACCGAGAGCTATTGGGGAAATGTGAATCCAATTGGAGTTAGGAGTTGCTATGACGAGGGAAAGCGAGTTGCTGAAACTTTGATGTTTGATTATCACAGGCAGCATGGCATAGAGATAAGGATTGCTAGGATCTTCAACACTTATGGACCTCGAATGAATATCGATGATGGTCGTGTTGTCAGCAATTTCATAGCGCAAGCTATCCGTAACGATCCCTTGACTGTTCAAGCGCCTGGGACTCAAACACGGAGTTTCTGCTATGTGTCGGACATGGTCGATGGCCTTATTCGACTTATGCAAGGGGACAACACCGGACCTATCAACATTGGGAATCCAGGTGAATTTACAATGCTTGAACTTGCAGAGAATGTCAAGGAGCTTATCAATCCTAAGGTAGAGATCATAATGGTTGAAAACACACCTCTCTGCATCCGAGTTCGATCGATCCCCGCCAAAGGAAGCCTGACATCTCGAAAGCAAAGGAGCTGCTGGGATGGGAACCAAAGGTTAAGTTGCGCGAAGGTCTTCCCCTCATGGAGGATGATTTCCGCGCAAGGCTTGGCGTCCTCAAAAGTTAGTCGACGATGTAGCATAGAATGCAAGGGTGGTGGCGCATTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

315

Amino Acids

35.25

Weight (kDa)

8.85

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	901
AccII	CGCG	2 cut(s)	839, 872
AciI	CCGC	3 cut(s)	32, 771, 870
AclWI	GGATC	5 cut(s)	83, 296, 458, 527, 760
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	884
AfaI	GTAC	2 cut(s)	188, 226
AfiI	CCNNNNNNNGG	2 cut(s)	776, 858
AgsI	TTSAA	6 cut(s)	95, 232, 457, 548, 677, 734
AjnI	CCWGG	2 cut(s)	553, 655
AluBI	AGCT	4 cut(s)	330, 521, 700, 807
AluI	AGCT	4 cut(s)	330, 521, 700, 807
AlwI	GGATC	5 cut(s)	83, 296, 458, 527, 760
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	2 cut(s)	421, 807
ApoI	RAATTY	1 cut(s)	662
Asp700I	GAANNNNTTC	2 cut(s)	99, 845
AspLEI	GCGC	5 cut(s)	517, 553, 839, 874, 935
AspS9I	GGNCC	2 cut(s)	467, 635
AsuHPI	GGTGA	3 cut(s)	34, 305, 671
AvaII	GGWCC	2 cut(s)	467, 635
AxyI	CCTNAGG	1 cut(s)	711
BbsI	GAAGAC	1 cut(s)	838
BbvI	GCAGC	2 cut(s)	433, 794
BccI	CCATC	4 cut(s)	159, 482, 593, 809
BciT130I	CCWGG	2 cut(s)	555, 657
BfaI	CTAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	554
BisI	GCNGC	2 cut(s)	422, 808
BlsI	GCNGC	2 cut(s)	423, 809
Bme1390I	CCNGG	2 cut(s)	555, 657
Bme18I	GGWCC	2 cut(s)	467, 635
BmgT120I	GGNCC	2 cut(s)	467, 635
BmiI	GGNNCC	1 cut(s)	821
BmrFI	CCNGG	2 cut(s)	555, 657
BmsI	GCATC	1 cut(s)	759
BpiI	GAAGAC	1 cut(s)	838
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bsa29I	ATCGAT	2 cut(s)	483, 764
BsaHI	GRCGYC	1 cut(s)	884
BsaJI	CCNNGG	1 cut(s)	554
BsaWI	WCCGGW	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	2 cut(s)	776, 858
Bse1I	ACTGG	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	711
BseBI	CCWGG	2 cut(s)	555, 657
BseCI	ATCGAT	2 cut(s)	483, 764
BseDI	CCNNGG	1 cut(s)	554
BseGI	GGATG	4 cut(s)	82, 750, 820, 867
BseLI	CCNNNNNNNGG	2 cut(s)	776, 858
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	433, 794
BseYI	CCCAGC	2 cut(s)	238, 810
Bsh1236I	CGCG	2 cut(s)	839, 872
Bsh1285I	CGRYCG	1 cut(s)	764
BshFI	GGCC	1 cut(s)	603
BshVI	ATCGAT	2 cut(s)	483, 764
BsiEI	CGRYCG	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	3 cut(s)	255, 571, 638
BslI	CCNNNNNNNGG	2 cut(s)	776, 858
BsmFI	GGGAC	3 cut(s)	255, 571, 638
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	1 cut(s)	603
Bsp143I	GATC	8 cut(s)	75, 174, 301, 450, 532, 720, 761, 765
BspACI	CCGC	3 cut(s)	32, 771, 870
BspANI	GGCC	1 cut(s)	603
BspDI	ATCGAT	2 cut(s)	483, 764
BspFNI	CGCG	2 cut(s)	839, 872
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	821
BspPI	GGATC	5 cut(s)	83, 296, 458, 527, 760
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	554
BssMI	GATC	8 cut(s)	75, 174, 301, 450, 532, 720, 761, 765
BssNI	GRCGYC	1 cut(s)	884
Bst2UI	CCWGG	2 cut(s)	555, 657
Bst4CI	ACNGT	1 cut(s)	544
BstACI	GRCGYC	1 cut(s)	884
BstAPI	GCANNNNNTGC	1 cut(s)	918
BstC8I	GCNNGC	2 cut(s)	160, 519
BstDEI	CTNAG	1 cut(s)	711
BstENI	CCTNNNNNAGG	1 cut(s)	856
BstF5I	GGATG	4 cut(s)	82, 750, 820, 867
BstFNI	CGCG	2 cut(s)	839, 872
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	5 cut(s)	517, 553, 839, 874, 935
BstKTI	GATC	8 cut(s)	78, 177, 304, 453, 535, 723, 764, 768
BstMBI	GATC	8 cut(s)	75, 174, 301, 450, 532, 720, 761, 765
BstMCI	CGRYCG	1 cut(s)	764
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 918
BstNI	CCWGG	2 cut(s)	555, 657
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	553, 655
BstUI	CGCG	2 cut(s)	839, 872
BstV1I	GCAGC	2 cut(s)	433, 794
BstV2I	GAAGAC	1 cut(s)	838
BstX2I	RGATCY	2 cut(s)	301, 450
BstYI	RGATCY	2 cut(s)	301, 450
Bsu15I	ATCGAT	2 cut(s)	483, 764
Bsu36I	CCTNAGG	1 cut(s)	711
BsuRI	GGCC	1 cut(s)	603
BsuTUI	ATCGAT	2 cut(s)	483, 764
BtsCI	GGATG	4 cut(s)	82, 750, 820, 867
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	160, 519
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	5 cut(s)	517, 553, 839, 874, 935
Cfr13I	GGNCC	2 cut(s)	467, 635
ClaI	ATCGAT	2 cut(s)	483, 764
CseI	GACGC	1 cut(s)	873
Csp6I	GTAC	2 cut(s)	187, 225
CspCI	CAANNNNNGTGG	2 cut(s)	910, 945
CviAII	CATG	5 cut(s)	107, 235, 425, 592, 855
CviJI	RGCY	9 cut(s)	51, 121, 330, 521, 603, 700, 783, 807, 879
CviKI_1	RGCY	9 cut(s)	51, 121, 330, 521, 603, 700, 783, 807, 879
CviQI	GTAC	2 cut(s)	187, 225
DdeI	CTNAG	1 cut(s)	711
DpnI	GATC	8 cut(s)	77, 176, 303, 452, 534, 722, 763, 767
DpnII	GATC	8 cut(s)	75, 174, 301, 450, 532, 720, 761, 765
Eco47I	GGWCC	2 cut(s)	467, 635
Eco57I	CTGAAG	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	711
EcoNI	CCTNNNNNAGG	1 cut(s)	856
EcoRII	CCWGG	2 cut(s)	553, 655
FaeI	CATG	5 cut(s)	110, 238, 428, 595, 858
FaqI	GGGAC	3 cut(s)	255, 571, 638
FatI	CATG	5 cut(s)	106, 234, 424, 591, 854
FauI	CCCGC	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	901
Fnu4HI	GCNGC	2 cut(s)	422, 808
FokI	GGATG	4 cut(s)	69, 737, 827, 874
Fsp4HI	GCNGC	2 cut(s)	422, 808
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	5 cut(s)	516, 552, 838, 873, 934
GluI	GCNGC	2 cut(s)	422, 808
GsaI	CCCAGC	2 cut(s)	242, 814
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	1 cut(s)	633
HgaI	GACGC	1 cut(s)	873
HhaI	GCGC	5 cut(s)	517, 553, 839, 874, 935
Hin1I	GRCGYC	1 cut(s)	884
Hin1II	CATG	5 cut(s)	110, 238, 428, 595, 858
Hin6I	GCGC	5 cut(s)	515, 551, 837, 872, 933
HinP1I	GCGC	5 cut(s)	515, 551, 837, 872, 933
HincII	GTYRAC	2 cut(s)	139, 902
HindII	GTYRAC	2 cut(s)	139, 902
HinfI	GANTC	4 cut(s)	255, 346, 559, 652
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	3 cut(s)	34, 305, 671
Hpy166II	GTNNAC	2 cut(s)	139, 902
Hpy188I	TCNGA	4 cut(s)	260, 289, 589, 755
Hpy188III	TCNNGA	2 cut(s)	107, 792
Hpy8I	GTNNAC	2 cut(s)	139, 902
Hpy99I	CGWCG	1 cut(s)	906
HpyAV	CCTTC	1 cut(s)	835
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	4 cut(s)	619, 683, 750, 921
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 918
HpyF3I	CTNAG	1 cut(s)	711
Hsp92I	GRCGYC	1 cut(s)	884
Hsp92II	CATG	5 cut(s)	110, 238, 428, 595, 858
HspAI	GCGC	5 cut(s)	515, 551, 837, 872, 933
Kzo9I	GATC	8 cut(s)	75, 174, 301, 450, 532, 720, 761, 765
LmnI	GCTCC	3 cut(s)	260, 697, 804
Lsp1109I	GCAGC	2 cut(s)	433, 794
LweI	GCATC	1 cut(s)	759
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	112, 527
MalI	GATC	8 cut(s)	77, 176, 303, 452, 534, 722, 763, 767
MboI	GATC	8 cut(s)	75, 174, 301, 450, 532, 720, 761, 765
MboII	GAAGA	4 cut(s)	79, 169, 445, 838
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	2 cut(s)	301, 450
MluCI	AATT	5 cut(s)	37, 129, 351, 505, 662
MlyI	GAGTC	2 cut(s)	264, 553
MmeI	TCCRAC	2 cut(s)	238, 567
MroXI	GAANNNNTTC	2 cut(s)	99, 845
MseI	TTAA	1 cut(s)	830
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	555, 657
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	2 cut(s)	555, 657
MvnI	CGCG	2 cut(s)	839, 872
MwoI	GCNNNNNNNGC	2 cut(s)	164, 918
NdeII	GATC	8 cut(s)	75, 174, 301, 450, 532, 720, 761, 765
NlaIII	CATG	5 cut(s)	110, 238, 428, 595, 858
NlaIV	GGNNCC	1 cut(s)	821
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	1 cut(s)	106
PctI	GAATGC	1 cut(s)	923
PdmI	GAANNNNTTC	2 cut(s)	99, 845
PfeI	GAWTC	2 cut(s)	346, 652
PflFI	GACNNNGTC	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	423, 809
Ple19I	CGATCG	1 cut(s)	764
PleI	GAGTC	2 cut(s)	263, 553
PpsI	GAGTC	2 cut(s)	263, 553
Psp6I	CCWGG	2 cut(s)	553, 655
PspFI	CCCAGC	2 cut(s)	238, 810
PspGI	CCWGG	2 cut(s)	553, 655
PspN4I	GGNNCC	1 cut(s)	821
PspPI	GGNCC	2 cut(s)	467, 635
PsuI	RGATCY	2 cut(s)	301, 450
PsyI	GACNNNGTC	1 cut(s)	593
PvuI	CGATCG	1 cut(s)	764
RsaI	GTAC	2 cut(s)	188, 226
RsaNI	GTAC	2 cut(s)	187, 225
SalI	GTCGAC	1 cut(s)	900
SaqAI	TTAA	1 cut(s)	830
SatI	GCNGC	2 cut(s)	422, 808
Sau3AI	GATC	8 cut(s)	75, 174, 301, 450, 532, 720, 761, 765
Sau96I	GGNCC	2 cut(s)	467, 635
SchI	GAGTC	2 cut(s)	264, 553
ScrFI	CCNGG	2 cut(s)	555, 657
SfaNI	GCATC	1 cut(s)	759
SinI	GGWCC	2 cut(s)	467, 635
Sse9I	AATT	5 cut(s)	37, 129, 351, 505, 662
SsiI	CCGC	3 cut(s)	32, 771, 870
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	553, 655
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	8 cut(s)	472, 483, 597, 610, 760, 764, 793, 901
TaqII	GACCGA	2 cut(s)	68, 338
TasI	AATT	5 cut(s)	37, 129, 351, 505, 662
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	2 cut(s)	346, 652
Tru1I	TTAA	1 cut(s)	830
Tru9I	TTAA	1 cut(s)	830
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	421, 807
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	491, 499
TspGWI	ACGGA	2 cut(s)	515, 583
TspRI	CASTG	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	467, 635
XagI	CCTNNNNNAGG	1 cut(s)	856
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	901
XmnI	GAANNNNTTC	2 cut(s)	99, 845
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.