Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

14764371 .. 14765024

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCAAGGAGACAACACCGGTCCGATCAACATTGGGAATCCAGACGAGTTTACTATGCTCGAACTGGCAGAGAATGTTAAAGAGCTTATCAATCCTGAGGTGGAGTTCAAGATGGTTGAAAACACACCTGATGATCCTCGCCAGAGGAAGCCTGACATCTCAAAGGCAAAGGATCGGAGTTGCTGGGATGGGAGCCAAAGGTCAAGCTGCGTGACGGTCTGCCACTCATGGAGGAGGATTTCGTACAAGACTTGGTGTCCCAAGAAATCGATCAAGAATGTAGCAAAGAATTCGAAACAGATGGAGTCAAGCTCCTTGCATTGTGATCTTCGATCAATATCGTATAAGGCCGTCCTTGTGCTGTTGGAGGAGAACTTCAATTTTGTAAAGTCGACTCATTTTATCCCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

138

Amino Acids

15.72

Weight (kDa)

8.27

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	392
AclWI	GGATC	2 cut(s)	128, 180
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	1 cut(s)	245
AgeI	ACCGGT	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	109, 119, 379
AhdI	GACNNNNNGTC	1 cut(s)	255
AluBI	AGCT	3 cut(s)	85, 207, 312
AluI	AGCT	3 cut(s)	85, 207, 312
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	2 cut(s)	128, 180
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	289
AsiGI	ACCGGT	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	106, 182, 295
BceAI	ACGGC	1 cut(s)	335
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BcoDI	GTCTC	1 cut(s)	3
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	20
BmeRI	GACNNNNNGTC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bpu14I	TTCGAA	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	337
BsaWI	WCCGGW	1 cut(s)	17
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	69
Bse21I	CCTNAGG	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	337
BseCI	ATCGAT	1 cut(s)	269
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	247, 383
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	183
BshFI	GGCC	1 cut(s)	350
BshTI	ACCGGT	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	350
Bsp119I	TTCGAA	1 cut(s)	293
Bsp143I	GATC	6 cut(s)	24, 133, 172, 270, 325, 332
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	88
BspDI	ATCGAT	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	128, 180
BspT104I	TTCGAA	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	6 cut(s)	24, 133, 172, 270, 325, 332
Bst4CI	ACNGT	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	6 cut(s)	27, 136, 175, 273, 328, 335
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	6 cut(s)	24, 133, 172, 270, 325, 332
BstV1I	GCAGC	1 cut(s)	194
Bsu15I	ATCGAT	1 cut(s)	269
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	350
BsuTUI	ATCGAT	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	269
CpoI	CGGWCCG	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	244
CspAI	ACCGGT	1 cut(s)	17
CspI	CGGWCCG	1 cut(s)	20
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	6 cut(s)	85, 151, 195, 207, 312, 350
CviKI_1	RGCY	6 cut(s)	85, 151, 195, 207, 312, 350
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	6 cut(s)	26, 135, 174, 272, 327, 334
DpnII	GATC	6 cut(s)	24, 133, 172, 270, 325, 332
DriI	GACNNNNNGTC	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	20
Eco81I	CCTNAGG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	289
FaeI	CATG	1 cut(s)	231
FaiI	YATR	3 cut(s)	56, 229, 345
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	208
GluI	GCNGC	1 cut(s)	208
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	3 cut(s)	37, 305, 394
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	2 cut(s)	51, 393
Hpy188I	TCNGA	2 cut(s)	24, 177
Hpy188III	TCNNGA	4 cut(s)	41, 95, 109, 274
Hpy8I	GTNNAC	2 cut(s)	51, 393
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	4, 319
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	231
Kzo9I	GATC	6 cut(s)	24, 133, 172, 270, 325, 332
LmnI	GCTCC	2 cut(s)	192, 317
LpnPI	CCDG	8 cut(s)	31, 50, 54, 108, 141, 155, 165, 169
Lsp1109I	GCAGC	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	6 cut(s)	26, 135, 174, 272, 327, 334
MboI	GATC	6 cut(s)	24, 133, 172, 270, 325, 332
MboII	GAAGA	1 cut(s)	320
MluCI	AATT	2 cut(s)	289, 379
MlyI	GAGTC	2 cut(s)	314, 388
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	6 cut(s)	91, 138, 147, 225, 228, 361
MseI	TTAA	2 cut(s)	78, 412
MspI	CCGG	1 cut(s)	18
NdeII	GATC	6 cut(s)	24, 133, 172, 270, 325, 332
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	37
PinAI	ACCGGT	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	209
PleI	GAGTC	2 cut(s)	313, 388
PpsI	GAGTC	2 cut(s)	313, 388
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
Rsr2I	CGGWCCG	1 cut(s)	20
RsrII	CGGWCCG	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	78, 412
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	6 cut(s)	24, 133, 172, 270, 325, 332
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	2 cut(s)	314, 388
SetI	ASST	6 cut(s)	87, 102, 130, 203, 209, 314
SfuI	TTCGAA	1 cut(s)	293
SinI	GGWCC	1 cut(s)	20
Sse9I	AATT	2 cut(s)	289, 379
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	5 cut(s)	60, 269, 293, 331, 392
TasI	AATT	2 cut(s)	289, 379
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	78, 412
Tru9I	TTAA	2 cut(s)	78, 412
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.