Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

44871887 .. 44872591

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0329900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCCACAGAGAGGCATATATTCGCTAGCACAGTGTTGCAAGTAGAAACAGGGCACTCTGTACCAAGTTTGGATTTCCCCCGTGTGCATCCGATCCGTCTACGTCTCTTCAAGCAAACCCGGGTTTGGTATGATGATCCAGCAGACTTTACAACAGACGGTGAACCAACTTTCGTGACTGAGAAAGGACTTTTGCTCGGCAGTTGCTCCAGCCCAACAAGCATTGTTCGCGAATATCTTTCGAGTATGGGTGTCCCACAACAAGAACACAAAGTTATTTCTAGCAAAATATTTGCGCGCATTTTGTTCGACGTAGCTAATAATTTGCCTATTACTGTGAATATACTGGACATCACTGTGGTCTTATTGGGTGCTGCGCAATATCATGACATTATAGATCGGGTTGCAATAGAAACCATCCTATTTGAGGACGAGTACCGTAATAGGGTCAATTTTATTCCTGCTAGTAGATCATCGATCAAGAGTTTGAAGAAAACAAGACTTGATAGTTTGGAAGAGTCTGTTATCAGACTCATCCCGTCATGTGCTATATGTCTCGAGGACTTTGCAGAATGTACTGATCAAATGGTTACAACCTTACCCTGCAAACACCAGTATCATGAAGGTTGCATTGTCCAGTCCCTGGAGATCAGTCACCTTTGTCCCTTGTGCCGATACCCAATGCCAATTGTGGAAACGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

234

Amino Acids

26.47

Weight (kDa)

5.48

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	181 - 225	2.9e-10	Ring finger domain
zf-RING_11	PF17123	182 - 211	8.8e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	182 - 224	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	182 - 224	9.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	378
AccB7I	CCANNNNNTGG	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	100
AccII	CGCG	2 cut(s)	231, 298
AclWI	GGATC	2 cut(s)	88, 131
AfaI	GTAC	3 cut(s)	63, 437, 577
AfiI	CCNNNNNNNGG	5 cut(s)	12, 126, 427, 445, 643
AgsI	TTSAA	2 cut(s)	112, 490
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	110, 560
AlwI	GGATC	2 cut(s)	88, 131
AlwNI	CAGNNNCTG	1 cut(s)	643
Ama87I	CYCGRG	2 cut(s)	120, 557
ApeKI	GCWGC	1 cut(s)	374
AspLEI	GCGC	3 cut(s)	298, 300, 379
AsuC2I	CCSGG	2 cut(s)	121, 122
AsuHPI	GGTGA	2 cut(s)	173, 647
AsuNHI	GCTAGC	1 cut(s)	26
AvaI	CYCGRG	2 cut(s)	120, 557
BaeGI	GKGCMC	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	599, 632
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	425
BcgI	CGANNNNNNTGC	4 cut(s)	289, 323, 548, 582
BciT130I	CCWGG	1 cut(s)	644
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	2 cut(s)	121, 122
BcoDI	GTCTC	2 cut(s)	110, 560
BfaI	CTAG	3 cut(s)	27, 282, 465
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	121, 122, 644
BmeT110I	CYCGRG	2 cut(s)	120, 557
BmrFI	CCNGG	3 cut(s)	121, 122, 644
BmsI	GCATC	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	193, 665
BpuMI	CCSGG	2 cut(s)	121, 122
Bsa29I	ATCGAT	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	120, 642
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 126, 427, 445, 643
Bse1I	ACTGG	3 cut(s)	351, 613, 637
BseBI	CCWGG	1 cut(s)	644
BseCI	ATCGAT	1 cut(s)	476
BseDI	CCNNGG	2 cut(s)	120, 642
BseGI	GGATG	3 cut(s)	88, 417, 534
BseLI	CCNNNNNNNGG	5 cut(s)	12, 126, 427, 445, 643
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	3 cut(s)	351, 613, 637
BsePI	GCGCGC	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	361
Bsh1236I	CGCG	2 cut(s)	231, 298
BshVI	ATCGAT	1 cut(s)	476
BsiHKCI	CYCGRG	2 cut(s)	120, 557
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	3 cut(s)	239, 625, 648
BslI	CCNNNNNNNGG	5 cut(s)	12, 126, 427, 445, 643
BsmAI	GTCTC	2 cut(s)	110, 560
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	3 cut(s)	239, 625, 648
BsoBI	CYCGRG	2 cut(s)	120, 557
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	7 cut(s)	93, 136, 397, 470, 477, 580, 648
Bsp68I	TCGCGA	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	476
BspFNI	CGCG	2 cut(s)	231, 298
BspHI	TCATGA	2 cut(s)	385, 619
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	88, 131
BsrI	ACTGG	3 cut(s)	351, 613, 637
BssECI	CCNNGG	2 cut(s)	120, 642
BssHII	GCGCGC	1 cut(s)	296
BssMI	GATC	7 cut(s)	93, 136, 397, 470, 477, 580, 648
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	5 cut(s)	34, 161, 337, 358, 440
Bst6I	CTCTTC	2 cut(s)	113, 510
BstC8I	GCNNGC	2 cut(s)	28, 298
BstDEI	CTNAG	1 cut(s)	180
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	3 cut(s)	88, 417, 534
BstFNI	CGCG	2 cut(s)	231, 298
BstHHI	GCGC	3 cut(s)	298, 300, 379
BstKTI	GATC	7 cut(s)	96, 139, 400, 473, 480, 583, 651
BstMAI	GTCTC	2 cut(s)	110, 560
BstMBI	GATC	7 cut(s)	93, 136, 397, 470, 477, 580, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 228
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	3 cut(s)	119, 120, 642
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	2 cut(s)	231, 298
BstV1I	GCAGC	1 cut(s)	361
Bsu15I	ATCGAT	1 cut(s)	476
BsuTUI	ATCGAT	1 cut(s)	476
BtsCI	GGATG	3 cut(s)	88, 417, 534
BtsIMutI	CAGTG	2 cut(s)	39, 354
BtuMI	TCGCGA	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	28, 298
CaiI	CAGNNNCTG	1 cut(s)	643
CciI	TCATGA	2 cut(s)	385, 619
CfoI	GCGC	3 cut(s)	298, 300, 379
Cfr9I	CCCGGG	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	476
Csp6I	GTAC	3 cut(s)	62, 436, 576
CviAII	CATG	3 cut(s)	386, 543, 620
CviJI	RGCY	2 cut(s)	213, 317
CviKI_1	RGCY	2 cut(s)	213, 317
CviQI	GTAC	3 cut(s)	62, 436, 576
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	7 cut(s)	95, 138, 399, 472, 479, 582, 650
DpnII	GATC	7 cut(s)	93, 136, 397, 470, 477, 580, 648
Eam1104I	CTCTTC	2 cut(s)	113, 510
EarI	CTCTTC	2 cut(s)	113, 510
Eco88I	CYCGRG	2 cut(s)	120, 557
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	642
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	3 cut(s)	389, 546, 623
FaqI	GGGAC	3 cut(s)	239, 625, 648
FatI	CATG	3 cut(s)	385, 542, 619
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	3 cut(s)	75, 404, 521
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	3 cut(s)	27, 282, 465
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	3 cut(s)	297, 299, 378
GluI	GCNGC	1 cut(s)	375
GsuI	CTGGAG	2 cut(s)	193, 665
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	3 cut(s)	298, 300, 379
Hin1II	CATG	3 cut(s)	389, 546, 623
Hin6I	GCGC	3 cut(s)	296, 298, 377
HinP1I	GCGC	3 cut(s)	296, 298, 377
HinfI	GANTC	2 cut(s)	518, 531
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	2 cut(s)	173, 647
Hpy166II	GTNNAC	3 cut(s)	6, 101, 164
Hpy188I	TCNGA	2 cut(s)	93, 530
Hpy188III	TCNNGA	6 cut(s)	175, 230, 386, 481, 557, 620
Hpy8I	GTNNAC	3 cut(s)	6, 101, 164
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	5 cut(s)	34, 161, 337, 358, 440
HpyCH4IV	ACGT	2 cut(s)	103, 312
HpyCH4V	TGCA	6 cut(s)	40, 88, 407, 569, 606, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 228
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	103, 312
Hsp92II	CATG	3 cut(s)	389, 546, 623
HspAI	GCGC	3 cut(s)	296, 298, 377
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	7 cut(s)	93, 136, 397, 470, 477, 580, 648
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	3 cut(s)	27, 282, 465
MaeII	ACGT	2 cut(s)	103, 312
MaeIII	GTNAC	3 cut(s)	175, 589, 653
MalI	GATC	7 cut(s)	95, 138, 399, 472, 479, 582, 650
MboI	GATC	7 cut(s)	93, 136, 397, 470, 477, 580, 648
MboII	GAAGA	3 cut(s)	100, 502, 527
MfeI	CAATTG	1 cut(s)	687
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	3 cut(s)	322, 451, 687
MlyI	GAGTC	2 cut(s)	525, 527
MnlI	CCTC	3 cut(s)	6, 421, 553
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	3 cut(s)	121, 122, 644
MunI	CAATTG	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	644
MvnI	CGCG	2 cut(s)	231, 298
MwoI	GCNNNNNNNGC	2 cut(s)	219, 228
NciI	CCSGG	2 cut(s)	121, 122
NdeII	GATC	7 cut(s)	93, 136, 397, 470, 477, 580, 648
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	389, 546, 623
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	175, 653
NruI	TCGCGA	1 cut(s)	231
NsbI	TGCGCA	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	557
PagI	TCATGA	2 cut(s)	385, 619
PauI	GCGCGC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	643
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	2 cut(s)	525, 526
PpsI	GAGTC	2 cut(s)	525, 526
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
PstNI	CAGNNNCTG	1 cut(s)	643
PteI	GCGCGC	1 cut(s)	296
RruI	TCGCGA	1 cut(s)	231
RsaI	GTAC	3 cut(s)	63, 437, 577
RsaNI	GTAC	3 cut(s)	62, 436, 576
RseI	CAYNNNNRTG	1 cut(s)	356
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	7 cut(s)	93, 136, 397, 470, 477, 580, 648
SchI	GAGTC	2 cut(s)	525, 527
ScrFI	CCNGG	3 cut(s)	121, 122, 644
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	6 cut(s)	106, 315, 319, 599, 628, 660
SfaNI	GCATC	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	557
SlaI	CTCGAG	1 cut(s)	557
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	3 cut(s)	322, 451, 687
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	3 cut(s)	27, 282, 465
StyD4I	CCNGG	3 cut(s)	119, 120, 642
TaaI	ACNGT	5 cut(s)	34, 161, 337, 358, 440
TaiI	ACGT	2 cut(s)	106, 315
TaqI	TCGA	4 cut(s)	242, 309, 476, 558
TasI	AATT	3 cut(s)	322, 451, 687
TatI	WGTACW	1 cut(s)	575
TscAI	CASTG	2 cut(s)	39, 361
TseFI	GTSAC	2 cut(s)	175, 653
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	2 cut(s)	175, 653
TspDTI	ATGAA	1 cut(s)	636
TspGWI	ACGGA	1 cut(s)	86
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	2 cut(s)	39, 361
Van91I	CCANNNNNTGG	1 cut(s)	643
XagI	CCTNNNNNAGG	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	557
XmaI	CCCGGG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	100
XspI	CTAG	3 cut(s)	27, 282, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.