Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

44819816 .. 44820775

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0329500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCCGCAGAGAGGCATATTTTTCATAGCACAGTGTCGCAAATAGATTCAGGACAACCTGTACCAATATTGGAGGAGGGAGAAGGGACTCTGGTCATACTACGTCTTTTCAAACAAAGCCGGTTTTGGTATGATGATCCACGAGACTTCACACAGGATGGTGAACCAACCCTCGTAGATGAACAGATACTTCTTGTCCAACCTGGCCCAGCCAAATTAAAGTTTATTGCTGAGCATCTTTTGCGTATGGGTGTCCCACCAGAAGAACATGAAGCTATTGTTCTGAAATTTGTTCAGAAGTATATTGTAGATATTGACGACATCCCCCATTATGTGCCATATACTGTGAATATATTGGACATCAGCGTGTCCTTGTTGGGTAGTGCTGACTATCATGAGATCGTTGATTGGGTGGCAGAAGAAAACATCGTGTTTGAGGACCATTGGGGTACAAATAAGCTCAAATTTATTCCTGCAAGTAGATCTTGGATCAAGAGTTTGAAGAAAATAAAACTAGATACTTGGGAAGTAGATCTTGGATCATGTGCTATTTGTCTCGAGGACTTTGCAGAATGTAATGATCAACTGGTTACAACCTTACCCTGCAGACACCACTATCATGTAGATTGCATTGTCCAGTCCCTAGAGATCAGTCACCTTTGTCCCTTGTGCCGATACCCATTGCCAACCATGGAAGGGGAGGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

236

Amino Acids

27.09

Weight (kDa)

4.78

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	181 - 225	5.6e-11	Ring finger domain
zf-RING_11	PF17123	182 - 211	1.7e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	182 - 224	9.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	3 cut(s)	131, 497, 547
AcsI	RAATTY	2 cut(s)	287, 464
AfaI	GTAC	2 cut(s)	63, 451
AfiI	CCNNNNNNNGG	2 cut(s)	12, 696
AgsI	TTSAA	2 cut(s)	112, 502
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	2 cut(s)	275, 460
AluI	AGCT	2 cut(s)	275, 460
Alw26I	GTCTC	2 cut(s)	138, 560
AlwI	GGATC	3 cut(s)	131, 497, 547
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	287, 464
AspS9I	GGNCC	2 cut(s)	206, 439
AsuHPI	GGTGA	2 cut(s)	173, 647
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	141
BccI	CCATC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	1 cut(s)	204
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	138, 560
BfaI	CTAG	2 cut(s)	515, 644
BfmI	CTRYAG	1 cut(s)	604
BglII	AGATCT	2 cut(s)	482, 532
BlpI	GCTNAGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	206, 439
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	244
BoxI	GACNNNNGTC	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 696
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	591, 637
Bse3DI	GCAATG	1 cut(s)	680
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	690
BseGI	GGATG	2 cut(s)	163, 321
BseLI	CCNNNNNNNGG	2 cut(s)	12, 696
BseMI	GCAATG	1 cut(s)	680
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	591, 637
BseRI	GAGGAG	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	4 cut(s)	100, 239, 625, 648
BslI	CCNNNNNNNGG	2 cut(s)	12, 696
BsmAI	GTCTC	2 cut(s)	138, 560
BsmFI	GGGAC	4 cut(s)	100, 239, 625, 648
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	557
Bsp143I	GATC	8 cut(s)	136, 399, 482, 489, 532, 539, 580, 648
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	608
BspPI	GGATC	3 cut(s)	131, 497, 547
BsrDI	GCAATG	1 cut(s)	680
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	591, 637
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	8 cut(s)	136, 399, 482, 489, 532, 539, 580, 648
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	690
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	34, 346
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	2 cut(s)	163, 321
BstKTI	GATC	8 cut(s)	139, 402, 485, 492, 535, 542, 583, 651
BstMAI	GTCTC	2 cut(s)	138, 560
BstMBI	GATC	8 cut(s)	136, 399, 482, 489, 532, 539, 580, 648
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	204
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	604
BstX2I	RGATCY	2 cut(s)	482, 532
BstYI	RGATCY	2 cut(s)	482, 532
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	2 cut(s)	163, 321
BtsIMutI	CAGTG	1 cut(s)	39
CciI	TCATGA	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	206, 439
Csp6I	GTAC	2 cut(s)	62, 450
CviAII	CATG	5 cut(s)	269, 395, 543, 620, 691
CviJI	RGCY	5 cut(s)	120, 207, 212, 275, 460
CviKI_1	RGCY	5 cut(s)	120, 207, 212, 275, 460
CviQI	GTAC	2 cut(s)	62, 450
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	8 cut(s)	138, 401, 484, 491, 534, 541, 582, 650
DpnII	GATC	8 cut(s)	136, 399, 482, 489, 532, 539, 580, 648
Eco130I	CCWWGG	1 cut(s)	690
Eco47I	GGWCC	1 cut(s)	439
Eco88I	CYCGRG	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	5 cut(s)	272, 398, 546, 623, 694
FalI	AAGNNNNNCTT	4 cut(s)	469, 501, 519, 551
FaqI	GGGAC	4 cut(s)	100, 239, 625, 648
FatI	CATG	5 cut(s)	268, 394, 542, 619, 690
FbaI	TGATCA	1 cut(s)	580
FokI	GGATG	2 cut(s)	170, 308
FspBI	CTAG	2 cut(s)	515, 644
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	5 cut(s)	272, 398, 546, 623, 694
HinfI	GANTC	2 cut(s)	47, 88
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	2 cut(s)	173, 647
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	285, 297
Hpy188III	TCNNGA	4 cut(s)	51, 395, 493, 557
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	77, 689
HpyCH4III	ACNGT	2 cut(s)	34, 346
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	476, 569, 606, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	5 cut(s)	272, 398, 546, 623, 694
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	8 cut(s)	136, 399, 482, 489, 532, 539, 580, 648
LmnI	GCTCC	1 cut(s)	703
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	515, 644
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	2 cut(s)	589, 653
MalI	GATC	8 cut(s)	138, 401, 484, 491, 534, 541, 582, 650
MboI	GATC	8 cut(s)	136, 399, 482, 489, 532, 539, 580, 648
MboII	GAAGA	3 cut(s)	275, 431, 514
MflI	RGATCY	2 cut(s)	482, 532
MluCI	AATT	3 cut(s)	215, 287, 464
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	7 cut(s)	6, 67, 70, 182, 430, 553, 694
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	2 cut(s)	365, 618
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	8 cut(s)	136, 399, 482, 489, 532, 539, 580, 648
NlaIII	CATG	5 cut(s)	272, 398, 546, 623, 694
NmuCI	GTSAC	1 cut(s)	653
PaeR7I	CTCGAG	1 cut(s)	557
PagI	TCATGA	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PshAI	GACNNNNGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	206, 439
PstI	CTGCAG	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	482, 532
RsaI	GTAC	2 cut(s)	63, 451
RsaNI	GTAC	2 cut(s)	62, 450
RseI	CAYNNNNRTG	2 cut(s)	365, 618
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	8 cut(s)	136, 399, 482, 489, 532, 539, 580, 648
Sau96I	GGNCC	2 cut(s)	206, 439
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	7 cut(s)	61, 106, 205, 277, 462, 599, 660
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	604
Sfr274I	CTCGAG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	439
SlaI	CTCGAG	1 cut(s)	557
SmiMI	CAYNNNNRTG	2 cut(s)	365, 618
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	3 cut(s)	215, 287, 464
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	1 cut(s)	69
SspMI	CTAG	2 cut(s)	515, 644
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	2 cut(s)	34, 346
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	558
TasI	AATT	3 cut(s)	215, 287, 464
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	3 cut(s)	14, 195, 285
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	2 cut(s)	287, 464
XhoI	CTCGAG	1 cut(s)	557
XspI	CTAG	2 cut(s)	515, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.