Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

17490531 .. 17494099

Gene Structure 3569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22040.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTACTAATGGAGATCATGCTTCTTCAAAGCCGCCTCCAAGCCCCTCTCCTCTAAGAAATGCTAAATTCTTTCAGGCGAATATGAGAATTTTGGTCACTGGAGGTGCTGGGTTCATTGGCTCTCACCTAGTAGACAAGCTGATGGAAAACGAGAAGAATGAGGTTATTGTTGCGGACAACTACTTCACTGGCTCAAAGGACAACCTTAAGAAATGGATTGGCCATCCTAGATTTGAGCTAATCCGTCATGATGTCACTGAGCCATTGCTGGTTGAGGTTGATCAAATATTCCATCTTGCTTGCCCTGCTTCTCCGATCTTCTACAAACACAATCCAGTAAAGACAATAAAGACAAATGTGATCGGCACATTGAACATGCTGGGACTTGCCAAACGAGTTGGAGCAAGGATTTTGCTCACATCTACTTCAGAGGTGTACGGAGATCCTCTTATTCATCCTCAGGTTGAGAGCTATTGGGGAAACGTGAATCCAATTGGAGTTAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACATTGATGTTTGATTATCACAGGCAGCACGGCATAGAGATCCGGATTGCTAGGATTTTCAACACTTATGGACCTCGCATGAATATTGATGACGGCCGTGTTGTCAGCAACTTCATAGCCCAAGCTATCCGAAATGACCCCTTGACTGTTCAATCGCCTGGAACACAGACAAGGAGTTTCTGCTATGTCTCTGACATGGTTGATGGTCTTATTCGACTTATGGAAGGAGACAACACTGGTCCAATCAACATTGGAAATCCAGGTGAATTTACAATGCTTGAACTCGCAGAGAATGTCAAGGAGCTTATCAATCCTAAGGTGGAGATTAAAATGGTTGAAAACACACCTGATGATCCTCGCCAGAGGAAGCCTGACATCTCAAAAGCAAAGGAGTTACTGGGATGGGAACCAAAGGTCAAGTTGCGTGACGGTCTGCCCCTTATGGAGGATGATTTCCGTACAAGACTTGGTGTTCCCAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

342

Amino Acids

38.3

Weight (kDa)

7.13

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	29 - 292	3.6e-07	RmlD substrate binding domain
Epimerase	PF01370	31 - 265	5.3e-46	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	31 - 138	9.2e-08	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	32 - 326	1.4e-49	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	32 - 184	1.2e-12	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	87 - 201	3.8e-06	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	582
AciI	CCGC	2 cut(s)	35, 176
AclWI	GGATC	3 cut(s)	440, 574, 887
AcoI	YGGCCR	2 cut(s)	223, 634
AcsI	RAATTY	3 cut(s)	68, 90, 806
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	2 cut(s)	440, 1000
AfiI	CCNNNNNNNGG	1 cut(s)	985
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	30, 376, 601, 692, 821, 878
AjnI	CCWGG	2 cut(s)	697, 799
AluBI	AGCT	5 cut(s)	142, 241, 474, 665, 844
AluI	AGCT	5 cut(s)	142, 241, 474, 665, 844
Alw26I	GTCTC	2 cut(s)	733, 762
AlwI	GGATC	3 cut(s)	440, 574, 887
Aor13HI	TCCGGA	1 cut(s)	582
AoxI	GGCC	2 cut(s)	223, 634
ApeKI	GCWGC	1 cut(s)	565
ApoI	RAATTY	3 cut(s)	68, 90, 806
AspS9I	GGNCC	2 cut(s)	611, 779
AsuHPI	GGTGA	2 cut(s)	119, 815
AvaII	GGWCC	2 cut(s)	611, 779
AxyI	CCTNAGG	2 cut(s)	462, 855
BalI	TGGCCA	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	5 cut(s)	139, 234, 303, 737, 936
BceAI	ACGGC	3 cut(s)	586, 621, 649
BciT130I	CCWGG	2 cut(s)	699, 801
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	733, 762
BfaI	CTAG	3 cut(s)	131, 231, 591
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	2 cut(s)	35, 566
BlsI	GCNGC	2 cut(s)	36, 567
Bme1390I	CCNGG	2 cut(s)	699, 801
Bme18I	GGWCC	2 cut(s)	611, 779
BmgT120I	GGNCC	2 cut(s)	611, 779
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	2 cut(s)	699, 801
BmrI	ACTGGG	1 cut(s)	947
BmuI	ACTGGG	1 cut(s)	947
BpmI	CTGGAG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	1 cut(s)	985
Bse1I	ACTGG	5 cut(s)	106, 196, 338, 781, 942
Bse21I	CCTNAGG	2 cut(s)	462, 855
Bse3DI	GCAATG	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	699, 801
BseGI	GGATG	4 cut(s)	226, 457, 947, 994
BseLI	CCNNNNNNNGG	1 cut(s)	985
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	252, 476
BseNI	ACTGG	5 cut(s)	106, 196, 338, 781, 942
BseRI	GAGGAG	1 cut(s)	42
BseX3I	CGGCCG	1 cut(s)	634
BseXI	GCAGC	1 cut(s)	577
BseYI	CCCAGC	2 cut(s)	110, 382
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	2 cut(s)	225, 636
BsiEI	CGRYCG	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	583
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	985
BsmAI	GTCTC	2 cut(s)	733, 762
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	2 cut(s)	225, 636
Bsp13I	TCCGGA	1 cut(s)	582
Bsp143I	GATC	7 cut(s)	16, 283, 318, 363, 445, 579, 892
BspACI	CCGC	2 cut(s)	35, 176
BspANI	GGCC	2 cut(s)	225, 636
BspCNI	CTCAG	2 cut(s)	253, 475
BspEI	TCCGGA	1 cut(s)	582
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	948
BspPI	GGATC	3 cut(s)	440, 574, 887
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	5 cut(s)	106, 196, 338, 781, 942
BssMI	GATC	7 cut(s)	16, 283, 318, 363, 445, 579, 892
Bst2UI	CCWGG	2 cut(s)	699, 801
Bst4CI	ACNGT	2 cut(s)	688, 971
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	4 cut(s)	56, 261, 462, 855
BstENI	CCTNNNNNAGG	1 cut(s)	983
BstF5I	GGATG	4 cut(s)	226, 457, 947, 994
BstKTI	GATC	7 cut(s)	19, 286, 321, 366, 448, 582, 895
BstMAI	GTCTC	2 cut(s)	733, 762
BstMBI	GATC	7 cut(s)	16, 283, 318, 363, 445, 579, 892
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	699, 801
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	697, 799
BstV1I	GCAGC	1 cut(s)	577
BstX2I	RGATCY	2 cut(s)	445, 579
BstYI	RGATCY	2 cut(s)	445, 579
BstZI	CGGCCG	1 cut(s)	634
Bsu36I	CCTNAGG	2 cut(s)	462, 855
BsuRI	GGCC	2 cut(s)	225, 636
BtsCI	GGATG	4 cut(s)	226, 457, 947, 994
BtsIMutI	CAGTG	4 cut(s)	99, 189, 258, 774
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	611, 779
Csp6I	GTAC	2 cut(s)	439, 999
CviAII	CATG	5 cut(s)	20, 251, 379, 619, 736
CviQI	GTAC	2 cut(s)	439, 999
DdeI	CTNAG	4 cut(s)	56, 261, 462, 855
DpnI	GATC	7 cut(s)	18, 285, 320, 365, 447, 581, 894
DpnII	GATC	7 cut(s)	16, 283, 318, 363, 445, 579, 892
EaeI	YGGCCR	2 cut(s)	223, 634
EagI	CGGCCG	1 cut(s)	634
EclXI	CGGCCG	1 cut(s)	634
Eco47I	GGWCC	2 cut(s)	611, 779
Eco52I	CGGCCG	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	414
Eco81I	CCTNAGG	2 cut(s)	462, 855
EcoNI	CCTNNNNNAGG	1 cut(s)	983
EcoRII	CCWGG	2 cut(s)	697, 799
FaeI	CATG	5 cut(s)	23, 254, 382, 622, 739
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	5 cut(s)	19, 250, 378, 618, 735
FbaI	TGATCA	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	35, 566
FokI	GGATG	4 cut(s)	213, 444, 954, 1001
Fsp4HI	GCNGC	2 cut(s)	35, 566
FspBI	CTAG	3 cut(s)	131, 231, 591
GluI	GCNGC	2 cut(s)	35, 566
GsaI	CCCAGC	2 cut(s)	114, 386
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	225, 636
HapII	CCGG	1 cut(s)	583
Hin1II	CATG	5 cut(s)	23, 254, 382, 622, 739
HinfI	GANTC	1 cut(s)	490
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	2 cut(s)	119, 815
Hpy166II	GTNNAC	2 cut(s)	136, 439
Hpy188I	TCNGA	4 cut(s)	318, 433, 671, 733
Hpy188III	TCNNGA	2 cut(s)	251, 583
Hpy8I	GTNNAC	2 cut(s)	136, 439
HpyAV	CCTTC	1 cut(s)	758
HpyCH4III	ACNGT	2 cut(s)	688, 971
HpyCH4IV	ACGT	1 cut(s)	486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	4 cut(s)	56, 261, 462, 855
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	5 cut(s)	23, 254, 382, 622, 739
Kpn2I	TCCGGA	1 cut(s)	582
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	7 cut(s)	16, 283, 318, 363, 445, 579, 892
LmnI	GCTCC	2 cut(s)	404, 841
Lsp1109I	GCAGC	1 cut(s)	577
MaeI	CTAG	3 cut(s)	131, 231, 591
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	4 cut(s)	97, 256, 933, 965
MalI	GATC	7 cut(s)	18, 285, 320, 365, 447, 581, 894
MboI	GATC	7 cut(s)	16, 283, 318, 363, 445, 579, 892
MboII	GAAGA	3 cut(s)	18, 169, 313
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	2 cut(s)	445, 579
MlsI	TGGCCA	1 cut(s)	225
MluCI	AATT	5 cut(s)	68, 90, 495, 806, 1021
MluNI	TGGCCA	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	382
Mox20I	TGGCCA	1 cut(s)	225
MroI	TCCGGA	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	225
MseI	TTAA	2 cut(s)	210, 867
Msp20I	TGGCCA	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	2 cut(s)	699, 801
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	2 cut(s)	699, 801
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	7 cut(s)	16, 283, 318, 363, 445, 579, 892
NlaIII	CATG	5 cut(s)	23, 254, 382, 622, 739
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	3 cut(s)	97, 256, 965
NspI	RCATGY	1 cut(s)	382
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	36, 567
Psp6I	CCWGG	2 cut(s)	697, 799
PspFI	CCCAGC	2 cut(s)	110, 382
PspGI	CCWGG	2 cut(s)	697, 799
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	2 cut(s)	611, 779
PsuI	RGATCY	2 cut(s)	445, 579
RsaI	GTAC	2 cut(s)	440, 1000
RsaNI	GTAC	2 cut(s)	439, 999
SaqAI	TTAA	2 cut(s)	210, 867
SatI	GCNGC	2 cut(s)	35, 566
Sau3AI	GATC	7 cut(s)	16, 283, 318, 363, 445, 579, 892
Sau96I	GGNCC	2 cut(s)	611, 779
ScrFI	CCNGG	2 cut(s)	699, 801
SinI	GGWCC	2 cut(s)	611, 779
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	68, 90, 495, 806, 1021
SsiI	CCGC	2 cut(s)	35, 176
SspI	AATATT	2 cut(s)	291, 625
SspMI	CTAG	3 cut(s)	131, 231, 591
StyD4I	CCNGG	2 cut(s)	697, 799
TaaI	ACNGT	2 cut(s)	688, 971
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	1 cut(s)	754
TasI	AATT	5 cut(s)	68, 90, 495, 806, 1021
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	2 cut(s)	210, 867
Tru9I	TTAA	2 cut(s)	210, 867
TscAI	CASTG	4 cut(s)	106, 196, 265, 781
TseFI	GTSAC	3 cut(s)	97, 256, 965
TseI	GCWGC	1 cut(s)	565
Tsp45I	GTSAC	3 cut(s)	97, 256, 965
TspDTI	ATGAA	4 cut(s)	106, 446, 635, 643
TspGWI	ACGGA	3 cut(s)	236, 456, 986
TspRI	CASTG	4 cut(s)	106, 196, 265, 781
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	611, 779
XagI	CCTNNNNNAGG	1 cut(s)	983
XapI	RAATTY	3 cut(s)	68, 90, 806
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	3 cut(s)	131, 231, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.