FvH4_1g22850

UDP-glucuronic acid decarboxylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
14782885 .. 14783232
348 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22850.t1

Sequence Viewer

Length: 273 bp
ATGAGAATCTTGGTTACTGGAGGAGCTGGGTTCATTGGGTCTCACCTAGTGGACAAGCTTATGGAAAACGAGAAGAACGAGCTTTTATGTCATGATGTTACTGAGCCACTGAGGGTTGAGGTTGATCAGATATTCCATCTTGCTTGCCCTGCTTCTCCGATCTTTTACAAACACAATCCAATCAAGACAATGAAGACGAATATGATTGGTACAATGAACATGCTGGGACTTGCCAAACGAGTTGGAGCAAGGATCTTACTCACGTCTACTTAA

Protein Analysis

91

Amino Acids

9.99

Weight (kDa)

8.71

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 3 - 90 5e-10 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 38 - 90 2.3e-06 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 266
AclWI GGATC 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 1 cut(s) 211
AjiI CACGTC 1 cut(s) 264
AluBI AGCT 3 cut(s) 26, 58, 82
AluI AGCT 3 cut(s) 26, 58, 82
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 200
BccI CCATC 1 cut(s) 144
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 47
BmgBI CACGTC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 93, 101
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 36
BseYI CCCAGC 2 cut(s) 26, 223
BslFI GGGAC 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 124, 159, 252
BspCNI CTCAG 2 cut(s) 94, 102
BspHI TCATGA 1 cut(s) 91
BspPI GGATC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 22
BssMI GATC 3 cut(s) 124, 159, 252
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 102, 110
BstKTI GATC 3 cut(s) 127, 162, 255
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 3 cut(s) 124, 159, 252
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BtrI CACGTC 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 145
CciI TCATGA 1 cut(s) 91
Csp6I GTAC 1 cut(s) 210
CviAII CATG 2 cut(s) 92, 220
CviJI RGCY 4 cut(s) 26, 58, 82, 106
CviKI_1 RGCY 4 cut(s) 26, 58, 82, 106
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 102, 110
DpnI GATC 3 cut(s) 126, 161, 254
DpnII GATC 3 cut(s) 124, 159, 252
DraIII CACNNNGTG 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 45
FaeI CATG 2 cut(s) 95, 223
FaiI YATR 5 cut(s) 62, 88, 93, 203, 221
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 91, 219
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 1 cut(s) 266
FspBI CTAG 1 cut(s) 47
GsaI CCCAGC 2 cut(s) 30, 227
GsuI CTGGAG 1 cut(s) 39
Hin1II CATG 2 cut(s) 95, 223
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 6
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 52, 267
Hpy188I TCNGA 2 cut(s) 129, 159
Hpy188III TCNNGA 2 cut(s) 92, 184
Hpy8I GTNNAC 2 cut(s) 52, 267
HpyCH4IV ACGT 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 102, 110
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 2 cut(s) 95, 223
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 3 cut(s) 124, 159, 252
LmnI GCTCC 2 cut(s) 23, 245
LpnPI CCDG 4 cut(s) 3, 12, 162, 209
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 13, 97
MalI GATC 3 cut(s) 126, 161, 254
MboI GATC 3 cut(s) 124, 159, 252
MboII GAAGA 2 cut(s) 85, 205
MflI RGATCY 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 3 cut(s) 14, 105, 112
MseI TTAA 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 3 cut(s) 124, 159, 252
NlaIII CATG 2 cut(s) 95, 223
NspI RCATGY 1 cut(s) 223
PagI TCATGA 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 6
PspFI CCCAGC 2 cut(s) 26, 223
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 271
Sau3AI GATC 3 cut(s) 124, 159, 252
SetI ASST 6 cut(s) 28, 48, 60, 84, 123, 266
SspMI CTAG 1 cut(s) 47
TaiI ACGT 1 cut(s) 266
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 3 cut(s) 22, 206, 230
TspRI CASTG 1 cut(s) 114
XceI RCATGY 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.