Rw2G021050

UDP-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002413
Physical Location & Seq
Reverse (-)
28888836 .. 28889861
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021050.1

Sequence Viewer

Length: 1026 bp
ATGGCTACTAATGGAGAACGAACTTGTACAAAACCGCCTCCGAGCCCCTCTCCTCTAAGAAATGCCAAATTCTTTGGGGCAAATATGAGAATTTTGGTTACTGGAGGAGCTGGGTTCATTGGCTCTCACCTGGTGGACAAGCTGATGGAAAACGAGAAGAATGAGGTGATTGTTGCGGATAACTACTTCACTGGATCAAAGGACAACCTTAAGAAATGGATTGGTCATCCAAGATTCGAGCTTATTCGTCATGATGTGACTGAGCCGTTGCTGGTTGAGGTTGACCAAATATTCCATCTTGCTTGCCCTGCTTCTCCGATCTTCTACAAACACAATCCAATAAAGACAATGAAGACAAATATGATTGGTACAATGAACATGCTGGGACTTGCCAAGCGAGTTGGAGCAAGGATTTTGCTCACATCTACTTCGGAGGTGTATGGAGATCCTCTTATTCACCCTCAAGTTGAGAGCTATTGGGGAAATGTGAATCCCAATGGAGTTAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACATTGATGTTTGATTATCACAGGCAGCACGGCGTAGAGATACGGATCGCTAGGGTTTTCAACACTTATGGCCCTCGCATGAATATTGATGACGGCCGTGTTGTGAGCAACTTCATAGCCCAAGCTATCCGGCATGAACCCTTGACTGTTCAATCACCAGGAACGCAGACAAGGAGTTTCTGCTACGTCTCTGACATGGTCGATGGCCTTATTCGACTTATGCAAGGAGACAACACAGGTCCAATCAACATTGGGAATCCAGGTGAATTTACAATGCTCCAACTAGCAGAGAATGTCAAGGAGCTTATCAATCCTAAAGTGGAGATTAAAATGGTTGAAAACACACCTGATGATCCTCGCCAGAGGAAGCCTGACATCTCAAAAGCAAAGGAGTTGCTAGGATGGGAACCAAAGGTCAAGTTGCGCGATGGTCTGCCCCTCATGGAGGAGGACTTCCGTACAAGACTTGGTGTCCCCAGAAATTAA

Protein Analysis

341

Amino Acids

38.42

Weight (kDa)

8.56

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 29 - 292 1.1e-07 RmlD substrate binding domain
Epimerase PF01370 31 - 265 7.9e-45 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 31 - 138 7.4e-07 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 32 - 326 6.1e-49 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 32 - 184 2.5e-13 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 87 - 204 1.2e-06 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 966
AciI CCGC 2 cut(s) 35, 176
AclWI GGATC 4 cut(s) 202, 440, 593, 887
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 3 cut(s) 68, 90, 806
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 3 cut(s) 28, 370, 1000
AfiI CCNNNNNNNGG 1 cut(s) 985
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 3 cut(s) 601, 692, 878
AhdI GACNNNNNGTC 1 cut(s) 1010
AjnI CCWGG 3 cut(s) 129, 697, 799
AluBI AGCT 6 cut(s) 110, 142, 241, 474, 665, 844
AluI AGCT 6 cut(s) 110, 142, 241, 474, 665, 844
Alw26I GTCTC 2 cut(s) 733, 762
AlwI GGATC 4 cut(s) 202, 440, 593, 887
AoxI GGCC 3 cut(s) 610, 634, 745
ApeKI GCWGC 1 cut(s) 565
ApoI RAATTY 3 cut(s) 68, 90, 806
AspLEI GCGC 1 cut(s) 966
AspS9I GGNCC 2 cut(s) 611, 779
AsuHPI GGTGA 5 cut(s) 119, 178, 449, 687, 815
AvaII GGWCC 1 cut(s) 779
BanII GRGCYC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 577
BccI CCATC 5 cut(s) 139, 303, 737, 936, 962
BceAI ACGGC 4 cut(s) 250, 586, 621, 649
BciT130I CCWGG 3 cut(s) 131, 699, 801
BcoDI GTCTC 2 cut(s) 733, 762
BfaI CTAG 3 cut(s) 591, 824, 938
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 566
BlsI GCNGC 1 cut(s) 567
Bme1390I CCNGG 3 cut(s) 131, 699, 801
Bme18I GGWCC 1 cut(s) 779
BmeRI GACNNNNNGTC 1 cut(s) 1010
BmgT120I GGNCC 2 cut(s) 611, 779
BmiI GGNNCC 1 cut(s) 948
BmrFI CCNGG 3 cut(s) 131, 699, 801
BpiI GAAGAC 1 cut(s) 359
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpmI CTGGAG 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 584
Bsc4I CCNNNNNNNGG 1 cut(s) 985
Bse1I ACTGG 2 cut(s) 106, 196
Bse8I GATNNNNATC 1 cut(s) 584
BseBI CCWGG 3 cut(s) 131, 699, 801
BseGI GGATG 2 cut(s) 226, 947
BseJI GATNNNNATC 1 cut(s) 584
BseLI CCNNNNNNNGG 1 cut(s) 985
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 106, 196
BseRI GAGGAG 3 cut(s) 42, 120, 1001
BseX3I CGGCCG 1 cut(s) 634
BseXI GCAGC 1 cut(s) 577
BseYI CCCAGC 2 cut(s) 110, 382
Bsh1236I CGCG 1 cut(s) 966
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 3 cut(s) 612, 636, 747
BsiEI CGRYCG 1 cut(s) 637
BsiSI CCGG 1 cut(s) 670
BslFI GGGAC 2 cut(s) 399, 998
BslI CCNNNNNNNGG 1 cut(s) 985
BsmAI GTCTC 2 cut(s) 733, 762
BsmBI CGTCTC 1 cut(s) 733
BsmFI GGGAC 2 cut(s) 399, 998
BsnI GGCC 3 cut(s) 612, 636, 747
Bsp1286I GDGCHC 1 cut(s) 47
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 5 cut(s) 194, 318, 445, 585, 892
BspACI CCGC 2 cut(s) 35, 176
BspANI GGCC 3 cut(s) 612, 636, 747
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 966
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 948
BspPI GGATC 4 cut(s) 202, 440, 593, 887
BspTI CTTAAG 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 2 cut(s) 106, 196
BssMI GATC 5 cut(s) 194, 318, 445, 585, 892
Bst2UI CCWGG 3 cut(s) 131, 699, 801
Bst4CI ACNGT 1 cut(s) 688
BstAFI CTTAAG 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 2 cut(s) 56, 261
BstENI CCTNNNNNAGG 1 cut(s) 983
BstF5I GGATG 2 cut(s) 226, 947
BstFNI CGCG 1 cut(s) 966
BstHHI GCGC 1 cut(s) 966
BstKTI GATC 5 cut(s) 197, 321, 448, 588, 895
BstMAI GTCTC 2 cut(s) 733, 762
BstMBI GATC 5 cut(s) 194, 318, 445, 585, 892
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 3 cut(s) 131, 699, 801
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 3 cut(s) 129, 697, 799
BstUI CGCG 1 cut(s) 966
BstV1I GCAGC 1 cut(s) 577
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BstZI CGGCCG 1 cut(s) 634
BsuRI GGCC 3 cut(s) 612, 636, 747
BtgZI GCGATG 1 cut(s) 981
BtsCI GGATG 2 cut(s) 226, 947
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 304
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 966
Cfr13I GGNCC 2 cut(s) 611, 779
CsiI ACCWGGT 1 cut(s) 129
Csp6I GTAC 3 cut(s) 27, 369, 999
CviAII CATG 6 cut(s) 251, 379, 619, 674, 736, 982
CviQI GTAC 3 cut(s) 27, 369, 999
DdeI CTNAG 2 cut(s) 56, 261
DpnI GATC 5 cut(s) 196, 320, 447, 587, 894
DpnII GATC 5 cut(s) 194, 318, 445, 585, 892
DraIII CACNNNGTG 1 cut(s) 133
DriI GACNNNNNGTC 1 cut(s) 1010
EaeI YGGCCR 1 cut(s) 634
EagI CGGCCG 1 cut(s) 634
Eam1105I GACNNNNNGTC 1 cut(s) 1010
EclXI CGGCCG 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 779
Eco52I CGGCCG 1 cut(s) 634
EcoNI CCTNNNNNAGG 1 cut(s) 983
EcoRII CCWGG 3 cut(s) 129, 697, 799
EcoT38I GRGCYC 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 733
FaeI CATG 6 cut(s) 254, 382, 622, 677, 739, 985
FaqI GGGAC 2 cut(s) 399, 998
FatI CATG 6 cut(s) 250, 378, 618, 673, 735, 981
Fnu4HI GCNGC 1 cut(s) 566
FokI GGATG 2 cut(s) 213, 954
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 566
FspBI CTAG 3 cut(s) 591, 824, 938
GlaI GCGC 1 cut(s) 965
GluI GCNGC 1 cut(s) 566
GsaI CCCAGC 2 cut(s) 114, 386
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 3 cut(s) 612, 636, 747
HapII CCGG 1 cut(s) 670
HhaI GCGC 1 cut(s) 966
Hin1II CATG 6 cut(s) 254, 382, 622, 677, 739, 985
Hin6I GCGC 1 cut(s) 964
HinP1I GCGC 1 cut(s) 964
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 3 cut(s) 234, 490, 796
HpaII CCGG 1 cut(s) 670
HphI GGTGA 5 cut(s) 119, 178, 449, 687, 815
Hpy166II GTNNAC 2 cut(s) 136, 283
Hpy188I TCNGA 4 cut(s) 42, 318, 433, 733
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 2 cut(s) 136, 283
HpyCH4III ACNGT 1 cut(s) 688
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 1 cut(s) 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 56, 261
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 6 cut(s) 254, 382, 622, 677, 739, 985
HspAI GCGC 1 cut(s) 964
Kzo9I GATC 5 cut(s) 194, 318, 445, 585, 892
LmnI GCTCC 4 cut(s) 107, 404, 822, 841
Lsp1109I GCAGC 1 cut(s) 577
MabI ACCWGGT 1 cut(s) 129
MaeI CTAG 3 cut(s) 591, 824, 938
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 2 cut(s) 97, 256
MalI GATC 5 cut(s) 196, 320, 447, 587, 894
MboI GATC 5 cut(s) 194, 318, 445, 585, 892
MboII GAAGA 3 cut(s) 169, 313, 364
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 4 cut(s) 68, 90, 806, 1021
MmeI TCCRAC 2 cut(s) 382, 844
MseI TTAA 3 cut(s) 210, 867, 1024
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 1 cut(s) 670
MspR9I CCNGG 3 cut(s) 131, 699, 801
MvaI CCWGG 3 cut(s) 131, 699, 801
MvnI CGCG 1 cut(s) 966
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 5 cut(s) 194, 318, 445, 585, 892
NlaIII CATG 6 cut(s) 254, 382, 622, 677, 739, 985
NlaIV GGNNCC 1 cut(s) 948
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 382
PagI TCATGA 1 cut(s) 250
PfeI GAWTC 3 cut(s) 234, 490, 796
PflFI GACNNNGTC 1 cut(s) 737
PkrI GCNGC 1 cut(s) 567
Psp6I CCWGG 3 cut(s) 129, 697, 799
PspFI CCCAGC 2 cut(s) 110, 382
PspGI CCWGG 3 cut(s) 129, 697, 799
PspN4I GGNNCC 1 cut(s) 948
PspPI GGNCC 2 cut(s) 611, 779
PsuI RGATCY 1 cut(s) 445
PsyI GACNNNGTC 1 cut(s) 737
RsaI GTAC 3 cut(s) 28, 370, 1000
RsaNI GTAC 3 cut(s) 27, 369, 999
SaqAI TTAA 3 cut(s) 210, 867, 1024
SatI GCNGC 1 cut(s) 566
Sau3AI GATC 5 cut(s) 194, 318, 445, 585, 892
Sau96I GGNCC 2 cut(s) 611, 779
ScrFI CCNGG 3 cut(s) 131, 699, 801
SduI GDGCHC 1 cut(s) 47
SexAI ACCWGGT 1 cut(s) 129
SinI GGWCC 1 cut(s) 779
SmlI CTYRAG 2 cut(s) 209, 462
SmoI CTYRAG 2 cut(s) 209, 462
Sse9I AATT 4 cut(s) 68, 90, 806, 1021
SsiI CCGC 2 cut(s) 35, 176
SspI AATATT 2 cut(s) 291, 625
SspMI CTAG 3 cut(s) 591, 824, 938
StyD4I CCNGG 3 cut(s) 129, 697, 799
TaaI ACNGT 1 cut(s) 688
TaiI ACGT 1 cut(s) 729
TaqI TCGA 3 cut(s) 237, 741, 754
TasI AATT 4 cut(s) 68, 90, 806, 1021
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 3 cut(s) 234, 490, 796
Tru1I TTAA 3 cut(s) 210, 867, 1024
Tru9I TTAA 3 cut(s) 210, 867, 1024
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 565
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 6 cut(s) 106, 365, 389, 635, 643, 690
TspGWI ACGGA 2 cut(s) 598, 986
TspRI CASTG 1 cut(s) 196
Tth111I GACNNNGTC 1 cut(s) 737
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 779
XagI CCTNNNNNAGG 1 cut(s) 983
XapI RAATTY 3 cut(s) 68, 90, 806
XceI RCATGY 1 cut(s) 382
XspI CTAG 3 cut(s) 591, 824, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.