Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Forward (+)

44845727 .. 44848632

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0329800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCAGTCCTGCTTTGCTGAAAATATAATTGATTTGGCATGTATCATCATTGCTGTACTAATCAGCAGTAGGGTATGCAACATCTTTTGCAAGTTACAGCAGCAGGGTCTCATATTGCTATTATCTGCATTGTCTCAGCATTCATTCAAACATCCAGAGGTTCGTTCAACTTGTGATAAGGGGCCAAGGAGGACCCTAGATACAAGTCTGGAATCCTCCTTGCCTGTGGAGCTCATACTGATACAAGTATCGGACCTGCTTTTGTGGACCAAGCTCATACCTGATACAAGCTTCATGGCTCTCTGCTTTCTACGACAGACCGTCGATTTTTTGCAGGAAGTGTTTAGTGGTTTGAGATTGAGTCCAGAACCGGCGGCAATACCCCCAGAACCGGCCGGAAAAACACCGAACCGGCCTCCGGAAGTGACAGAAGTTCCCCTGCCCGGTTCAAAGCTTTTTCCTTCGCCTCAGACCGCCACACTGTACCATCGGAAGCGTTTTGATCCCAAGTTCCCGGAACCGGAAAAATTATTCCCTGAACCGGCCAAAACATACCCGGACCGGCCACCTGAACCTGCTGCACCTTTGAACCGCCACCTGCATCTCCAGCTCCTACCTCAAGCCCTGTGCAGCCCAACCCAGAAGAATCAGAAGCAGTCCGGCCCAGAAGCAGAAGGAGACCAGCTCGGCCCAGCAACAGAAGAAGTCAAACCCTCGGCCCAGAAGACCAACGAGCCCAGAAGCCCACCGCCACATATGCACTACCACGTCAACGTCAGCAGCCACGTCAGCAAGCTGTCATCAGCCACGTCAGTACCAGTCAGCAGTGGATCAGCGCCACGTCAGCACCGGTCAACGCCGGTTGACCGTTTCCGGTCAACTTTCCGGCCACTTTCCGAATACTTTTTCCGGCCAAATTTTCCGGCGACCTATTTCAAGATGAATAACCTGAACAAATTGGACTTTGCTCAATTGGGAACAACTGGCTCTGCATATCATAGGTGGGTTCGTGATGTCCGCCAGCATCTCAAGGCTGATGGAATCCTGGATACAATTCTCGAGCTAGGACGTGCTAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

360

Amino Acids

40.23

Weight (kDa)

8.86

Isoelectric Point (pI)

69.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	606
Acc36I	ACCTGC	3 cut(s)	264, 583, 606
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	5 cut(s)	374, 474, 592, 749, 1018
AclWI	GGATC	2 cut(s)	497, 838
AcoI	YGGCCR	5 cut(s)	393, 543, 563, 887, 911
AcsI	RAATTY	1 cut(s)	916
AfaI	GTAC	3 cut(s)	57, 485, 816
AfiI	CCNNNNNNNGG	5 cut(s)	391, 418, 443, 520, 541
AgeI	ACCGGT	1 cut(s)	849
AgsI	TTSAA	5 cut(s)	148, 168, 450, 589, 937
AhdI	GACNNNNNGTC	1 cut(s)	320
AjiI	CACGTC	5 cut(s)	769, 787, 810, 842, 1070
AjnI	CCWGG	1 cut(s)	1044
AluBI	AGCT	8 cut(s)	232, 274, 291, 454, 610, 685, 796, 1063
AluI	AGCT	8 cut(s)	232, 274, 291, 454, 610, 685, 796, 1063
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	3 cut(s)	113, 138, 672
AlwI	GGATC	2 cut(s)	497, 838
Ama87I	CYCGRG	1 cut(s)	1058
Aor13HI	TCCGGA	1 cut(s)	418
ApeKI	GCWGC	4 cut(s)	100, 578, 630, 780
ApoI	RAATTY	1 cut(s)	916
AsiGI	ACCGGT	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	8 cut(s)	182, 192, 253, 267, 559, 662, 689, 718
AsuC2I	CCSGG	3 cut(s)	444, 515, 557
AvaI	CYCGRG	1 cut(s)	1058
AvaII	GGWCC	4 cut(s)	192, 253, 267, 559
BaeI	ACNNNNGTAYC	2 cut(s)	798, 831
BanII	GRGCYC	2 cut(s)	234, 738
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	4 cut(s)	112, 565, 642, 792
BccI	CCATC	2 cut(s)	495, 1031
BciT130I	CCWGG	1 cut(s)	1046
BciVI	GTATCC	1 cut(s)	1042
BcnI	CCSGG	3 cut(s)	444, 515, 557
BcoDI	GTCTC	3 cut(s)	113, 138, 672
BfaI	CTAG	2 cut(s)	197, 1064
BfoI	RGCGCY	1 cut(s)	839
BfuAI	ACCTGC	3 cut(s)	264, 583, 606
BfuI	GTATCC	1 cut(s)	1042
BisI	GCNGC	5 cut(s)	101, 375, 579, 631, 781
BlsI	GCNGC	5 cut(s)	102, 376, 580, 632, 782
Bme1390I	CCNGG	4 cut(s)	444, 515, 557, 1046
Bme18I	GGWCC	4 cut(s)	192, 253, 267, 559
BmeRI	GACNNNNNGTC	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	1058
BmgBI	CACGTC	5 cut(s)	769, 787, 810, 842, 1070
BmgT120I	GGNCC	8 cut(s)	182, 192, 253, 267, 559, 662, 689, 718
BmiI	GGNNCC	3 cut(s)	183, 194, 519
BmrFI	CCNGG	4 cut(s)	444, 515, 557, 1046
BmsI	GCATC	2 cut(s)	610, 1033
BpiI	GAAGAC	1 cut(s)	731
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpmI	CTGGAG	1 cut(s)	590
BpuEI	CTTGAG	2 cut(s)	603, 1013
BpuMI	CCSGG	3 cut(s)	444, 515, 557
BsaI	GGTCTC	2 cut(s)	113, 672
BsaJI	CCNNGG	2 cut(s)	185, 714
BsaWI	WCCGGW	4 cut(s)	418, 520, 849, 873
Bsc4I	CCNNNNNNNGG	5 cut(s)	391, 418, 443, 520, 541
Bse118I	RCCGGY	7 cut(s)	370, 391, 411, 541, 561, 849, 859
Bse1I	ACTGG	2 cut(s)	818, 988
Bse3DI	GCAATG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	1046
BseDI	CCNNGG	2 cut(s)	185, 714
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	5 cut(s)	391, 418, 443, 520, 541
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	149, 482
BseNI	ACTGG	2 cut(s)	818, 988
BseX3I	CGGCCG	1 cut(s)	393
BseXI	GCAGC	4 cut(s)	112, 565, 642, 792
BseYI	CCCAGC	1 cut(s)	691
BsgI	GTGCAG	2 cut(s)	564, 649
Bsh1285I	CGRYCG	1 cut(s)	396
BshTI	ACCGGT	1 cut(s)	849
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	1058
BslI	CCNNNNNNNGG	5 cut(s)	391, 418, 443, 520, 541
BsmAI	GTCTC	3 cut(s)	113, 138, 672
BsmI	GAATGC	1 cut(s)	139
Bso31I	GGTCTC	2 cut(s)	113, 672
BsoBI	CYCGRG	1 cut(s)	1058
Bsp1286I	GDGCHC	2 cut(s)	234, 738
Bsp13I	TCCGGA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	502, 830
BspACI	CCGC	5 cut(s)	374, 474, 592, 749, 1018
BspCNI	CTCAG	2 cut(s)	148, 481
BspEI	TCCGGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	183, 194, 519
BspMI	ACCTGC	3 cut(s)	264, 583, 606
BspPI	GGATC	2 cut(s)	497, 838
BspTNI	GGTCTC	2 cut(s)	113, 672
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	7 cut(s)	370, 391, 411, 541, 561, 849, 859
BsrI	ACTGG	2 cut(s)	818, 988
BssAI	RCCGGY	7 cut(s)	370, 391, 411, 541, 561, 849, 859
BssECI	CCNNGG	2 cut(s)	185, 714
BssMI	GATC	2 cut(s)	502, 830
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	1046
Bst4CI	ACNGT	4 cut(s)	322, 483, 869, 1079
BstC8I	GCNNGC	2 cut(s)	794, 1022
BstDEI	CTNAG	2 cut(s)	135, 468
BstF5I	GGATG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	839
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	2 cut(s)	505, 833
BstMAI	GTCTC	3 cut(s)	113, 138, 672
BstMBI	GATC	2 cut(s)	502, 830
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 607, 757, 789, 844
BstNI	CCWGG	1 cut(s)	1046
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	4 cut(s)	442, 513, 555, 1044
BstV1I	GCAGC	4 cut(s)	112, 565, 642, 792
BstV2I	GAAGAC	1 cut(s)	731
BstZI	CGGCCG	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	1042
BtrI	CACGTC	5 cut(s)	769, 787, 810, 842, 1070
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	832
BtsIMutI	CAGTG	2 cut(s)	479, 832
BveI	ACCTGC	3 cut(s)	264, 583, 606
Cac8I	GCNNGC	2 cut(s)	794, 1022
CfoI	GCGC	1 cut(s)	838
Cfr10I	RCCGGY	7 cut(s)	370, 391, 411, 541, 561, 849, 859
Cfr13I	GGNCC	8 cut(s)	182, 192, 253, 267, 559, 662, 689, 718
CpoI	CGGWCCG	1 cut(s)	559
Csp6I	GTAC	3 cut(s)	56, 484, 815
CspAI	ACCGGT	1 cut(s)	849
CspI	CGGWCCG	1 cut(s)	559
CviAII	CATG	2 cut(s)	39, 295
CviQI	GTAC	3 cut(s)	56, 484, 815
DdeI	CTNAG	2 cut(s)	135, 468
DpnI	GATC	2 cut(s)	504, 832
DpnII	GATC	2 cut(s)	502, 830
DriI	GACNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	5 cut(s)	393, 543, 563, 887, 911
EagI	CGGCCG	1 cut(s)	393
Eam1105I	GACNNNNNGTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	1007
Ecl136II	GAGCTC	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	2 cut(s)	234, 738
Eco31I	GGTCTC	2 cut(s)	113, 672
Eco47I	GGWCC	4 cut(s)	192, 253, 267, 559
Eco52I	CGGCCG	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	1058
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	1044
EcoT14I	CCWWGG	1 cut(s)	185
EcoT38I	GRGCYC	2 cut(s)	234, 738
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	42, 298
FatI	CATG	2 cut(s)	38, 294
FauNDI	CATATG	1 cut(s)	756
Fnu4HI	GCNGC	5 cut(s)	101, 375, 579, 631, 781
FokI	GGATG	1 cut(s)	138
FriOI	GRGCYC	2 cut(s)	234, 738
Fsp4HI	GCNGC	5 cut(s)	101, 375, 579, 631, 781
FspBI	CTAG	2 cut(s)	197, 1064
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	5 cut(s)	101, 375, 579, 631, 781
GsaI	CCCAGC	1 cut(s)	695
GsuI	CTGGAG	1 cut(s)	590
HaeII	RGCGCY	1 cut(s)	839
HhaI	GCGC	1 cut(s)	838
Hin1II	CATG	2 cut(s)	42, 298
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HincII	GTYRAC	4 cut(s)	772, 855, 865, 879
HindII	GTYRAC	4 cut(s)	772, 855, 865, 879
HindIII	AAGCTT	2 cut(s)	289, 452
HinfI	GANTC	4 cut(s)	212, 361, 646, 1041
Hpy166II	GTNNAC	5 cut(s)	267, 772, 855, 865, 879
Hpy188I	TCNGA	5 cut(s)	253, 471, 492, 651, 898
Hpy188III	TCNNGA	7 cut(s)	155, 209, 365, 419, 937, 1010, 1058
Hpy8I	GTNNAC	5 cut(s)	267, 772, 855, 865, 879
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	2 cut(s)	471, 668
HpyCH4III	ACNGT	4 cut(s)	322, 483, 869, 1079
HpyCH4IV	ACGT	6 cut(s)	768, 774, 786, 809, 841, 1069
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 607, 757, 789, 844
HpyF3I	CTNAG	2 cut(s)	135, 468
HpySE526I	ACGT	6 cut(s)	768, 774, 786, 809, 841, 1069
Hsp92II	CATG	2 cut(s)	42, 298
HspAI	GCGC	1 cut(s)	836
Kpn2I	TCCGGA	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	502, 830
LmnI	GCTCC	2 cut(s)	229, 615
Lsp1109I	GCAGC	4 cut(s)	112, 565, 642, 792
LweI	GCATC	2 cut(s)	610, 1033
MaeI	CTAG	2 cut(s)	197, 1064
MaeII	ACGT	6 cut(s)	768, 774, 786, 809, 841, 1069
MaeIII	GTNAC	2 cut(s)	93, 424
MalI	GATC	2 cut(s)	504, 832
MboI	GATC	2 cut(s)	502, 830
MboII	GAAGA	3 cut(s)	655, 713, 736
MfeI	CAATTG	1 cut(s)	971
MhlI	GDGCHC	2 cut(s)	234, 738
MluCI	AATT	6 cut(s)	27, 527, 916, 956, 971, 1053
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	7 cut(s)	151, 183, 226, 426, 477, 627, 724
MroI	TCCGGA	1 cut(s)	418
MspR9I	CCNGG	4 cut(s)	444, 515, 557, 1046
MunI	CAATTG	1 cut(s)	971
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	1046
MwoI	GCNNNNNNNGC	5 cut(s)	229, 607, 757, 789, 844
NciI	CCSGG	3 cut(s)	444, 515, 557
NdeI	CATATG	1 cut(s)	756
NdeII	GATC	2 cut(s)	502, 830
NlaIII	CATG	2 cut(s)	42, 298
NlaIV	GGNNCC	3 cut(s)	183, 194, 519
NmeAIII	GCCGAG	2 cut(s)	666, 695
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	42
PaeR7I	CTCGAG	1 cut(s)	1058
PaqCI	CACCTGC	1 cut(s)	606
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	212, 646, 1041
PfoI	TCCNGGA	2 cut(s)	513, 1044
PinAI	ACCGGT	1 cut(s)	849
PkrI	GCNGC	5 cut(s)	102, 376, 580, 632, 782
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PpuMI	RGGWCCY	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	1044
PspFI	CCCAGC	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	1044
PspN4I	GGNNCC	3 cut(s)	183, 194, 519
PspPI	GGNCC	8 cut(s)	182, 192, 253, 267, 559, 662, 689, 718
PspPPI	RGGWCCY	1 cut(s)	192
RsaI	GTAC	3 cut(s)	57, 485, 816
RsaNI	GTAC	3 cut(s)	56, 484, 815
Rsr2I	CGGWCCG	1 cut(s)	559
RsrII	CGGWCCG	1 cut(s)	559
SacI	GAGCTC	1 cut(s)	234
SatI	GCNGC	5 cut(s)	101, 375, 579, 631, 781
Sau3AI	GATC	2 cut(s)	502, 830
Sau96I	GGNCC	8 cut(s)	182, 192, 253, 267, 559, 662, 689, 718
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	4 cut(s)	444, 515, 557, 1046
SduI	GDGCHC	2 cut(s)	234, 738
SfaNI	GCATC	2 cut(s)	610, 1033
Sfr274I	CTCGAG	1 cut(s)	1058
SinI	GGWCC	4 cut(s)	192, 253, 267, 559
SlaI	CTCGAG	1 cut(s)	1058
SmlI	CTYRAG	3 cut(s)	618, 1028, 1058
SmoI	CTYRAG	3 cut(s)	618, 1028, 1058
Sse9I	AATT	6 cut(s)	27, 527, 916, 956, 971, 1053
SsiI	CCGC	5 cut(s)	374, 474, 592, 749, 1018
SspMI	CTAG	2 cut(s)	197, 1064
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	4 cut(s)	442, 513, 555, 1044
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	4 cut(s)	322, 483, 869, 1079
TaiI	ACGT	6 cut(s)	771, 777, 789, 812, 844, 1072
TaqI	TCGA	2 cut(s)	324, 1059
TasI	AATT	6 cut(s)	27, 527, 916, 956, 971, 1053
TatI	WGTACW	1 cut(s)	55
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	3 cut(s)	212, 646, 1041
TscAI	CASTG	2 cut(s)	486, 832
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	100, 578, 630, 780
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	132, 283, 956
TspRI	CASTG	2 cut(s)	486, 832
VpaK11BI	GGWCC	4 cut(s)	192, 253, 267, 559
XapI	RAATTY	1 cut(s)	916
XceI	RCATGY	1 cut(s)	42
XhoI	CTCGAG	1 cut(s)	1058
XspI	CTAG	2 cut(s)	197, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.