FvH4_6g23040

udp-glucuronic acid decarboxylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
16815164 .. 16815720
557 bp
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UTR
Exon/CDS
Intron
FvH4_6g23040.t1

Sequence Viewer

Length: 246 bp
ATGGTTGATTGCCTTATTCGACTTATGCAAGGAGACAACACTGGTCCAATCAACATTGGAAATCCTGATGAATTTACTATGCTCGAACTCGCCGAGAATGTGAAGGAGCTTATCAATCCTGAGGTGGAGATCAAAATGGTTGAACACACACCTGATGGATCCTCGTTAGAGGAAGCCGGACATCTCAAAAGCAAAGGAGTTTCTGGGATGGGAACCAAAGAAAATTTCCTGAGTAAAGAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

8.86

Weight (kDa)

4.53

Isoelectric Point (pI)

15.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 153, 166
AcsI RAATTY 2 cut(s) 71, 223
AgsI TTSAA 1 cut(s) 143
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 2 cut(s) 153, 166
ApoI RAATTY 2 cut(s) 71, 223
AspS9I GGNCC 1 cut(s) 44
AvaII GGWCC 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 120
BamHI GGATCC 1 cut(s) 158
BccI CCATC 2 cut(s) 149, 202
BcoDI GTCTC 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 160, 214
Bse1I ACTGG 1 cut(s) 46
Bse21I CCTNAGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 111, 221
BseNI ACTGG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 129, 158
BspCNI CTCAG 2 cut(s) 112, 222
BspLI GGNNCC 2 cut(s) 160, 214
BspPI GGATC 2 cut(s) 153, 166
BsrI ACTGG 1 cut(s) 46
BssMI GATC 2 cut(s) 129, 158
BstDEI CTNAG 2 cut(s) 120, 230
BstF5I GGATG 1 cut(s) 213
BstKTI GATC 2 cut(s) 132, 161
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 129, 158
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
Bsu36I CCTNAGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 44
CviJI RGCY 2 cut(s) 109, 176
CviKI_1 RGCY 2 cut(s) 109, 176
DdeI CTNAG 2 cut(s) 120, 230
DpnI GATC 2 cut(s) 131, 160
DpnII GATC 2 cut(s) 129, 158
Eco47I GGWCC 1 cut(s) 44
Eco81I CCTNAGG 1 cut(s) 120
FaiI YATR 2 cut(s) 26, 80
FokI GGATG 1 cut(s) 220
HapII CCGG 1 cut(s) 177
HpaII CCGG 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 65, 119, 229
HpyAV CCTTC 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 28
HpyF3I CTNAG 2 cut(s) 120, 230
Kzo9I GATC 2 cut(s) 129, 158
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 7 cut(s) 27, 78, 132, 165, 189, 190, 242
MalI GATC 2 cut(s) 131, 160
MboI GATC 2 cut(s) 129, 158
MflI RGATCY 1 cut(s) 158
MluCI AATT 2 cut(s) 71, 223
MnlI CCTC 3 cut(s) 115, 163, 172
MspI CCGG 1 cut(s) 177
NdeII GATC 2 cut(s) 129, 158
NlaIV GGNNCC 2 cut(s) 160, 214
NmeAIII GCCGAG 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 160, 214
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 158
Sau3AI GATC 2 cut(s) 129, 158
Sau96I GGNCC 1 cut(s) 44
SetI ASST 3 cut(s) 111, 126, 154
SinI GGWCC 1 cut(s) 44
Sse9I AATT 2 cut(s) 71, 223
TaqI TCGA 2 cut(s) 19, 84
TasI AATT 2 cut(s) 71, 223
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 71, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.