Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Forward (+)

62009306 .. 62015875

Gene Structure 6570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAACGATATCAAGCAACTTCATGATGGTGGCGCCGTCGTTGGAGATGGTGACATTGCCCTTGTCGTCGTGAATAAGCTTGTCCATGCCTGCGGGGCCGAGCGTGGTCCGACGACGTCGGCGACGGCCGTGCGGCGGTATTACATCAACATTGGGAATCCAGGTGAATTTACAATGCTCCAACTAGCAGAGAATTTCAAGGAGCTTATCAATCCTAAACTGGAGATTAAAATGGTTGAAAACACACATGATGATCCTCGCCGGAGGAAAAGCTCGACATCTCAAAAGCAAAGGAGTTGCTGGGATGGGAACCAAAGGTCAAGTTGCACGACGGTCTGCCCCTCATGGAGGAGGACTTCCGTACAAGACTTGGTGTCCCCAGAAATTAATCAAGAATGTAGCATAGAATTCGAAATCGATGGTGATGTAAGAATAAGTAGGGATCGTTCTCAACGGGGATTAGGGCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

157

Amino Acids

17.53

Weight (kDa)

6.82

Isoelectric Point (pI)

69.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	3 cut(s)	93, 133, 136
AclWI	GGATC	2 cut(s)	248, 450
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	167, 193, 407
AcyI	GRCGYC	2 cut(s)	33, 116
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	135, 348
AgsI	TTSAA	2 cut(s)	199, 239
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	3 cut(s)	79, 205, 273
AluI	AGCT	3 cut(s)	79, 205, 273
AlwI	GGATC	2 cut(s)	248, 450
AoxI	GGCC	3 cut(s)	96, 126, 464
ApoI	RAATTY	3 cut(s)	167, 193, 407
AseI	ATTAAT	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	96, 107, 464
AsuHPI	GGTGA	3 cut(s)	62, 176, 434
AsuII	TTCGAA	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	32
BccI	CCATC	4 cut(s)	20, 41, 299, 413
BceAI	ACGGC	3 cut(s)	20, 113, 141
BcgI	CGANNNNNNTGC	4 cut(s)	112, 146, 391, 425
BciT130I	CCWGG	1 cut(s)	162
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	107
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmgT120I	GGNCC	3 cut(s)	96, 107, 464
BmiI	GGNNCC	3 cut(s)	34, 97, 311
BmrFI	CCNGG	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	417
BsaHI	GRCGYC	2 cut(s)	33, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 348
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	417
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	135, 348
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	364
BseX3I	CGGCCG	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	300
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	98, 128, 466
BshNI	GGYRCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	417
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	135, 348
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	3 cut(s)	98, 128, 466
Bsp119I	TTCGAA	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	253, 442
BspACI	CCGC	3 cut(s)	93, 133, 136
BspANI	GGCC	3 cut(s)	98, 128, 466
BspDI	ATCGAT	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	34, 97, 311
BspPI	GGATC	2 cut(s)	248, 450
BspT104I	TTCGAA	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	253, 442
BssNI	GRCGYC	2 cut(s)	33, 116
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	334
BstACI	GRCGYC	2 cut(s)	33, 116
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	91
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	256, 445
BstMBI	GATC	2 cut(s)	253, 442
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	98, 128, 466
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	91
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	96, 107, 464
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	4 cut(s)	23, 86, 248, 345
CviJI	RGCY	6 cut(s)	79, 98, 128, 205, 273, 466
CviKI_1	RGCY	6 cut(s)	79, 98, 128, 205, 273, 466
CviQI	GTAC	1 cut(s)	362
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	2 cut(s)	255, 444
DpnII	GATC	2 cut(s)	253, 442
DriI	GACNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	126
EagI	CGGCCG	1 cut(s)	126
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EclXI	CGGCCG	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	107
Eco52I	CGGCCG	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	160
EcoRV	GATATC	1 cut(s)	10
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	4 cut(s)	26, 89, 251, 348
FaiI	YATR	5 cut(s)	24, 87, 249, 346, 404
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	4 cut(s)	22, 85, 247, 344
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	134
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	98, 128, 466
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	2 cut(s)	33, 116
Hin1II	CATG	4 cut(s)	26, 89, 251, 348
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	3 cut(s)	62, 176, 434
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	3 cut(s)	23, 70, 392
Hpy99I	CGWCG	7 cut(s)	41, 71, 115, 118, 121, 127, 334
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	2 cut(s)	33, 116
Hsp92II	CATG	4 cut(s)	26, 89, 251, 348
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	253, 442
LmnI	GCTCC	2 cut(s)	183, 202
LpnPI	CCDG	7 cut(s)	103, 147, 174, 206, 275, 286, 393
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	255, 444
MboI	GATC	2 cut(s)	253, 442
MluCI	AATT	4 cut(s)	167, 193, 384, 407
Mly113I	GGCGCC	1 cut(s)	33
MmeI	TCCRAC	3 cut(s)	22, 134, 205
MnlI	CCTC	5 cut(s)	258, 267, 342, 345, 352
MseI	TTAA	2 cut(s)	228, 387
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	95
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	2 cut(s)	253, 442
NlaIII	CATG	4 cut(s)	26, 89, 251, 348
NlaIV	GGNNCC	3 cut(s)	34, 97, 311
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	50
NspV	TTCGAA	1 cut(s)	411
PagI	TCATGA	1 cut(s)	22
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	157
PflFI	GACNNNGTC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	135
PluTI	GGCGCC	1 cut(s)	36
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	34, 97, 311
PspPI	GGNCC	3 cut(s)	96, 107, 464
PsrI	GAACNNNNNNTAC	2 cut(s)	430, 462
PsyI	GACNNNGTC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	228, 387
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	253, 442
Sau96I	GGNCC	3 cut(s)	96, 107, 464
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	6 cut(s)	81, 119, 166, 207, 275, 320
SfoI	GGCGCC	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	411
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	4 cut(s)	167, 193, 384, 407
SsiI	CCGC	3 cut(s)	93, 133, 136
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	3 cut(s)	275, 411, 417
TasI	AATT	4 cut(s)	167, 193, 384, 407
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	2 cut(s)	228, 387
Tru9I	TTAA	2 cut(s)	228, 387
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	11, 17
TspGWI	ACGGA	1 cut(s)	349
Tth111I	GACNNNGTC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	107
VspI	ATTAAT	1 cut(s)	387
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	3 cut(s)	167, 193, 407
XspI	CTAG	1 cut(s)	185
ZraI	GACGTC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.