Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Forward (+)

10816804 .. 10819219

Gene Structure 2416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTACTAATGGAGAACATGCTTCTACCAAACCGCCTCCAACCCCCTCTCCTCTAAGGAATGCCAAATTCTTTCAGCTGATGGAAAACGAGAAAAATGAGGTAATTGTTGCAGATAACTACTTCACTGGCTCAAAGGACAACCTTAAGAAATGGATTGGTCATCCAAGATTCGAGCTTATTCGTCATGATGTCACTGAGCCATTGCTGGTTGAGGTTGATCAAATATTCCATCTTGCTTGCCCTGCATCTCCGATCTTCTACAAACACAATCCAGTAAAGACAATAAAGACAAATGTGATCGGTACATTGAACATGCTGGGACTGGCCAAGCGAGTTGGAGCGAGGATTTTGCTCACTTCTACTTCGGAGGTGTATGGAGATCCTCTTATTCACCCTCAGGTTGAGAGCTATTGGGGAAATGTGAATCCAATTGGAGTTAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACATTGATGTTTGATTATCACAGGCAGCACGGCATAGAGATACGGATCGCTAGGATTTTCAACACTTATGGACCTCGCATGAATATTGATGATGGCCGTGTTGTCAGCAACTTCATAGCCCAAGCTATCCGGAATGACCCCTTGACTGTTCAAGCACCTGGAACACAGACAAGGAGTTTCTGCTACGTCTCTGACATGGTTGATGGCCTTATTCGACTTATGGAAGGCGACAACACTGGTCCAATCAACATTGGGAATCCAGGTGAATTTACAATGCTCGAACTCGCAGAGAATGTCAAGGAGCTTATCAATCCTAAGGTGGAGATTAAAATGGTTGAAAACACACCTGATGATCCTCGGCAGAGGAAGCCTGACATCTCAAAAGCAAAGGAGTTGCTGGGATGGGAACCAAAGGTCAAGTTGCGTGACGGTCTGCCCCTCATGGAGGATGATTTCCGTACAAGACTTGGTGTCCCCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

321

Amino Acids

36.18

Weight (kDa)

6.72

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	28 - 244	3.9e-35	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	33 - 305	8.8e-40	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	66 - 181	2.9e-06	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	606
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	377, 530, 824
AcoI	YGGCCR	2 cut(s)	327, 571
AcsI	RAATTY	2 cut(s)	68, 743
AfaI	GTAC	2 cut(s)	307, 937
AfiI	CCNNNNNNNGG	1 cut(s)	922
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	313, 538, 629, 815
AhdI	GACNNNNNGTC	1 cut(s)	947
AjnI	CCWGG	2 cut(s)	634, 736
AluBI	AGCT	5 cut(s)	79, 178, 411, 602, 781
AluI	AGCT	5 cut(s)	79, 178, 411, 602, 781
Alw26I	GTCTC	1 cut(s)	670
AlwI	GGATC	3 cut(s)	377, 530, 824
Aor13HI	TCCGGA	1 cut(s)	606
AoxI	GGCC	3 cut(s)	327, 571, 682
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	2 cut(s)	68, 743
AspS9I	GGNCC	2 cut(s)	548, 716
AsuHPI	GGTGA	2 cut(s)	386, 752
AvaII	GGWCC	2 cut(s)	548, 716
AxyI	CCTNAGG	2 cut(s)	399, 792
BalI	TGGCCA	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	5 cut(s)	76, 240, 563, 674, 873
BceAI	ACGGC	2 cut(s)	523, 558
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	2 cut(s)	636, 738
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	670
BfaI	CTAG	1 cut(s)	528
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
Bme1390I	CCNGG	2 cut(s)	636, 738
Bme18I	GGWCC	2 cut(s)	548, 716
BmeRI	GACNNNNNGTC	1 cut(s)	947
BmgT120I	GGNCC	2 cut(s)	548, 716
BmiI	GGNNCC	1 cut(s)	885
BmrFI	CCNGG	2 cut(s)	636, 738
BmsI	GCATC	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	833
BsaWI	WCCGGW	1 cut(s)	606
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	922
Bse1I	ACTGG	4 cut(s)	133, 275, 330, 718
Bse21I	CCTNAGG	2 cut(s)	399, 792
Bse3DI	GCAATG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	521
BseAI	TCCGGA	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	636, 738
BseDI	CCNNGG	1 cut(s)	833
BseGI	GGATG	3 cut(s)	163, 884, 931
BseJI	GATNNNNATC	1 cut(s)	521
BseLI	CCNNNNNNNGG	1 cut(s)	922
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	189, 413
BseNI	ACTGG	4 cut(s)	133, 275, 330, 718
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	514
BseYI	CCCAGC	2 cut(s)	319, 874
BshFI	GGCC	3 cut(s)	329, 573, 684
BsiSI	CCGG	1 cut(s)	607
BslFI	GGGAC	2 cut(s)	336, 935
BslI	CCNNNNNNNGG	1 cut(s)	922
BsmAI	GTCTC	1 cut(s)	670
BsmBI	CGTCTC	1 cut(s)	670
BsmFI	GGGAC	2 cut(s)	336, 935
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	329, 573, 684
Bsp13I	TCCGGA	1 cut(s)	606
Bsp143I	GATC	6 cut(s)	220, 255, 300, 382, 522, 829
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	3 cut(s)	329, 573, 684
BspCNI	CTCAG	2 cut(s)	190, 412
BspEI	TCCGGA	1 cut(s)	606
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	885
BspPI	GGATC	3 cut(s)	377, 530, 824
BspTI	CTTAAG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	203
BsrI	ACTGG	4 cut(s)	133, 275, 330, 718
BssECI	CCNNGG	1 cut(s)	833
BssMI	GATC	6 cut(s)	220, 255, 300, 382, 522, 829
Bst2UI	CCWGG	2 cut(s)	636, 738
Bst4CI	ACNGT	2 cut(s)	625, 908
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	56, 198, 399, 792
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstF5I	GGATG	3 cut(s)	163, 884, 931
BstKTI	GATC	6 cut(s)	223, 258, 303, 385, 525, 832
BstMAI	GTCTC	1 cut(s)	670
BstMBI	GATC	6 cut(s)	220, 255, 300, 382, 522, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 844
BstNI	CCWGG	2 cut(s)	636, 738
BstNSI	RCATGY	2 cut(s)	23, 319
BstSCI	CCNGG	2 cut(s)	634, 736
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu36I	CCTNAGG	2 cut(s)	399, 792
BsuRI	GGCC	3 cut(s)	329, 573, 684
BtsCI	GGATG	3 cut(s)	163, 884, 931
BtsIMutI	CAGTG	3 cut(s)	126, 195, 711
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	548, 716
Csp6I	GTAC	2 cut(s)	306, 936
CviAII	CATG	6 cut(s)	20, 188, 316, 556, 673, 919
CviQI	GTAC	2 cut(s)	306, 936
DdeI	CTNAG	4 cut(s)	56, 198, 399, 792
DpnI	GATC	6 cut(s)	222, 257, 302, 384, 524, 831
DpnII	GATC	6 cut(s)	220, 255, 300, 382, 522, 829
DriI	GACNNNNNGTC	1 cut(s)	947
EaeI	YGGCCR	2 cut(s)	327, 571
Eam1105I	GACNNNNNGTC	1 cut(s)	947
Eco47I	GGWCC	2 cut(s)	548, 716
Eco81I	CCTNAGG	2 cut(s)	399, 792
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoRII	CCWGG	2 cut(s)	634, 736
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	6 cut(s)	23, 191, 319, 559, 676, 922
FaqI	GGGAC	2 cut(s)	336, 935
FatI	CATG	6 cut(s)	19, 187, 315, 555, 672, 918
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	3 cut(s)	150, 891, 938
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	1 cut(s)	503
GsaI	CCCAGC	2 cut(s)	323, 878
HaeIII	GGCC	3 cut(s)	329, 573, 684
HapII	CCGG	1 cut(s)	607
Hin1II	CATG	6 cut(s)	23, 191, 319, 559, 676, 922
HinfI	GANTC	3 cut(s)	171, 427, 733
HpaII	CCGG	1 cut(s)	607
HphI	GGTGA	2 cut(s)	386, 752
Hpy188I	TCNGA	3 cut(s)	255, 370, 670
Hpy188III	TCNNGA	2 cut(s)	188, 607
HpyAV	CCTTC	1 cut(s)	695
HpyCH4III	ACNGT	2 cut(s)	625, 908
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	2 cut(s)	113, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 844
HpyF3I	CTNAG	4 cut(s)	56, 198, 399, 792
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	6 cut(s)	23, 191, 319, 559, 676, 922
Kpn2I	TCCGGA	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	6 cut(s)	220, 255, 300, 382, 522, 829
LmnI	GCTCC	2 cut(s)	341, 778
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	2 cut(s)	193, 902
MalI	GATC	6 cut(s)	222, 257, 302, 384, 524, 831
MboI	GATC	6 cut(s)	220, 255, 300, 382, 522, 829
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	5 cut(s)	68, 105, 432, 743, 958
MluNI	TGGCCA	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	65, 319
Mox20I	TGGCCA	1 cut(s)	329
MroI	TCCGGA	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	3 cut(s)	147, 804, 961
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	79
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	1 cut(s)	607
MspR9I	CCNGG	2 cut(s)	636, 738
MunI	CAATTG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	2 cut(s)	636, 738
MwoI	GCNNNNNNNGC	2 cut(s)	245, 844
NdeII	GATC	6 cut(s)	220, 255, 300, 382, 522, 829
NlaIII	CATG	6 cut(s)	23, 191, 319, 559, 676, 922
NlaIV	GGNNCC	1 cut(s)	885
NmeAIII	GCCGAG	1 cut(s)	814
NmuCI	GTSAC	2 cut(s)	193, 902
NspI	RCATGY	2 cut(s)	23, 319
PagI	TCATGA	1 cut(s)	187
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	171, 427, 733
PkrI	GCNGC	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	634, 736
PspFI	CCCAGC	2 cut(s)	319, 874
PspGI	CCWGG	2 cut(s)	634, 736
PspN4I	GGNNCC	1 cut(s)	885
PspPI	GGNCC	2 cut(s)	548, 716
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	79
RsaI	GTAC	2 cut(s)	307, 937
RsaNI	GTAC	2 cut(s)	306, 936
SaqAI	TTAA	3 cut(s)	147, 804, 961
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	6 cut(s)	220, 255, 300, 382, 522, 829
Sau96I	GGNCC	2 cut(s)	548, 716
ScrFI	CCNGG	2 cut(s)	636, 738
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	2 cut(s)	548, 716
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	5 cut(s)	68, 105, 432, 743, 958
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	2 cut(s)	228, 562
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	634, 736
TaaI	ACNGT	2 cut(s)	625, 908
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	3 cut(s)	174, 691, 756
TasI	AATT	5 cut(s)	68, 105, 432, 743, 958
TfiI	GAWTC	3 cut(s)	171, 427, 733
Tru1I	TTAA	3 cut(s)	147, 804, 961
Tru9I	TTAA	3 cut(s)	147, 804, 961
TscAI	CASTG	3 cut(s)	133, 202, 718
TseFI	GTSAC	2 cut(s)	193, 902
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	2 cut(s)	193, 902
TspDTI	ATGAA	2 cut(s)	572, 580
TspGWI	ACGGA	2 cut(s)	535, 923
TspRI	CASTG	3 cut(s)	133, 202, 718
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	548, 716
XagI	CCTNNNNNAGG	1 cut(s)	920
XapI	RAATTY	2 cut(s)	68, 743
XceI	RCATGY	2 cut(s)	23, 319
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.