Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

25607389 .. 25611635

Gene Structure 4247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G232500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTACAAATGGAGATCAACAAGCCACCCCAAAACCACCTCCAAACCCCTCTCCTTTAAGAAATGCCAAGTTCTTTCAGGCCAATATGAGAATTTTGGTTACTGGAGGAGCTGGATTCATTGGCTCTCACCTAGTGGACAAATTGATGGAAAATGAAAAGAATGAGGTTATTGTTGCGGATAATTACTTCACGGGCTCAAAGGACAACCTGAAGAAATGGATTGGTCATCCAAGATTTGAACTTATTCGTCATGATGTCACAGAGCCTCTGCTAATTGAGGTTGACCAAATATACCATCTTGCCTGCCCTGCTTCTCCAATCTTCTACAAGTACAATCCTGTAAAGACAATAAAGACAAATGTCATTGGTACATTGAACATGCTGGGACTTGCCAAGCGAGTTGGAGCAAGGATTTTGCTTACATCTACTTCGGAGGTGTATGGGGATCCTCTGATTCACCCCCAGACTGAGAGCTATTGGGGAAATGTGAATCCAATTGGAGTTAGGAGTTGCTATGATGAGGGAAAGCGAGTTGCTGAAACATTGATGTTTGATTATCACAGGCAGCATGGGATAGAGATAAGGATTGCCAGGATTTTCAACACTTATGGACCTCGCATGAATATTGATGATGGTCGTGTTGTCAGTAATTTCATAGCCCAAGCTATCCGTGATGATCCCTTGACTGTTCAAGCTCCTGGGACACAAACGCGGAGTTTCTGTTATGTGTCTGACATGGTTGATGGCCTTATTCGACTTATGCAAGGAGACAACACTGGACCGATCAACATTGGGAATCCAGGTGAATTTACAATGATCGAGCTTGCCGAGAATGTGAAGGAGCTCATCAATCCTAAGGTAGAGATTATAATGGTTGAAAACACACCGGATGATCCTCGCCAGAGGAAGCCTGACATCACAAAAGCAAAGGAGCTGCTGGGATGGGAACCAAAGGTTAAGTTGCGCGATGGTCTTCCCCTCATGGAGGATGATGTCCGCACAAGACTTGGTGTCCCCAAAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

344

Amino Acids

38.56

Weight (kDa)

7.06

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	872
AccII	CGCG	2 cut(s)	715, 969
AciI	CCGC	3 cut(s)	179, 715, 1000
AclWI	GGATC	4 cut(s)	443, 456, 674, 890
AcsI	RAATTY	2 cut(s)	93, 809
AcuI	CTGAAG	1 cut(s)	233
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	2 cut(s)	335, 373
AfiI	CCNNNNNNNGG	1 cut(s)	988
AgsI	TTSAA	5 cut(s)	242, 379, 604, 695, 881
AhdI	GACNNNNNGTC	1 cut(s)	1013
AjnI	CCWGG	3 cut(s)	593, 700, 802
AluBI	AGCT	7 cut(s)	113, 477, 668, 698, 826, 847, 937
AluI	AGCT	7 cut(s)	113, 477, 668, 698, 826, 847, 937
Alw21I	GWGCWC	1 cut(s)	849
Alw26I	GTCTC	1 cut(s)	765
AlwI	GGATC	4 cut(s)	443, 456, 674, 890
AoxI	GGCC	2 cut(s)	81, 748
ApeKI	GCWGC	2 cut(s)	568, 937
ApoI	RAATTY	2 cut(s)	93, 809
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	969
AspS9I	GGNCC	2 cut(s)	614, 782
AsuHPI	GGTGA	3 cut(s)	122, 452, 818
AvaII	GGWCC	2 cut(s)	614, 782
AxyI	CCTNAGG	1 cut(s)	858
BamHI	GGATCC	1 cut(s)	448
BanII	GRGCYC	2 cut(s)	200, 849
BbsI	GAAGAC	1 cut(s)	968
Bbv12I	GWGCWC	1 cut(s)	849
BbvI	GCAGC	2 cut(s)	580, 924
BccI	CCATC	6 cut(s)	142, 306, 629, 740, 939, 965
BciT130I	CCWGG	3 cut(s)	595, 702, 804
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	569, 938
BlsI	GCNGC	2 cut(s)	570, 939
Bme1390I	CCNGG	3 cut(s)	595, 702, 804
Bme18I	GGWCC	2 cut(s)	614, 782
BmeRI	GACNNNNNGTC	1 cut(s)	1013
BmgT120I	GGNCC	2 cut(s)	614, 782
BmiI	GGNNCC	2 cut(s)	450, 951
BmrFI	CCNGG	3 cut(s)	595, 702, 804
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	968
BpmI	CTGGAG	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	701
BsaWI	WCCGGW	1 cut(s)	889
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	988
Bse1I	ACTGG	2 cut(s)	109, 784
Bse21I	CCTNAGG	1 cut(s)	858
BseBI	CCWGG	3 cut(s)	595, 702, 804
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	4 cut(s)	229, 898, 950, 997
BseLI	CCNNNNNNNGG	1 cut(s)	988
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	109, 784
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	580, 924
BseYI	CCCAGC	2 cut(s)	385, 940
Bsh1236I	CGCG	2 cut(s)	715, 969
BshFI	GGCC	2 cut(s)	83, 750
BsiHKAI	GWGCWC	1 cut(s)	849
BsiSI	CCGG	1 cut(s)	890
BslFI	GGGAC	3 cut(s)	402, 718, 1001
BslI	CCNNNNNNNGG	1 cut(s)	988
BsmAI	GTCTC	1 cut(s)	765
BsmFI	GGGAC	3 cut(s)	402, 718, 1001
BsnI	GGCC	2 cut(s)	83, 750
Bsp1286I	GDGCHC	2 cut(s)	200, 849
Bsp143I	GATC	6 cut(s)	16, 448, 679, 786, 819, 895
BspACI	CCGC	3 cut(s)	179, 715, 1000
BspANI	GGCC	2 cut(s)	83, 750
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	2 cut(s)	715, 969
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	450, 951
BspPI	GGATC	4 cut(s)	443, 456, 674, 890
BsrI	ACTGG	2 cut(s)	109, 784
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	6 cut(s)	16, 448, 679, 786, 819, 895
Bst2UI	CCWGG	3 cut(s)	595, 702, 804
Bst4CI	ACNGT	1 cut(s)	691
BstC8I	GCNNGC	2 cut(s)	307, 828
BstDEI	CTNAG	2 cut(s)	471, 858
BstENI	CCTNNNNNAGG	1 cut(s)	986
BstF5I	GGATG	4 cut(s)	229, 898, 950, 997
BstFNI	CGCG	2 cut(s)	715, 969
BstHHI	GCGC	1 cut(s)	969
BstKTI	GATC	6 cut(s)	19, 451, 682, 789, 822, 898
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	6 cut(s)	16, 448, 679, 786, 819, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	3 cut(s)	595, 702, 804
BstNSI	RCATGY	1 cut(s)	385
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	3 cut(s)	593, 700, 802
BstUI	CGCG	2 cut(s)	715, 969
BstV1I	GCAGC	2 cut(s)	580, 924
BstV2I	GAAGAC	1 cut(s)	968
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	858
BsuRI	GGCC	2 cut(s)	83, 750
BtgZI	GCGATG	1 cut(s)	984
BtsCI	GGATG	4 cut(s)	229, 898, 950, 997
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	2 cut(s)	307, 828
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	969
Cfr13I	GGNCC	2 cut(s)	614, 782
Csp6I	GTAC	2 cut(s)	334, 372
CviAII	CATG	6 cut(s)	254, 382, 572, 622, 739, 985
CviQI	GTAC	2 cut(s)	334, 372
DdeI	CTNAG	2 cut(s)	471, 858
DpnI	GATC	6 cut(s)	18, 450, 681, 788, 821, 897
DpnII	GATC	6 cut(s)	16, 448, 679, 786, 819, 895
DraIII	CACNNNGTG	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	1013
Eam1105I	GACNNNNNGTC	1 cut(s)	1013
Ecl136II	GAGCTC	1 cut(s)	847
Eco24I	GRGCYC	2 cut(s)	200, 849
Eco47I	GGWCC	2 cut(s)	614, 782
Eco53kI	GAGCTC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	858
EcoICRI	GAGCTC	1 cut(s)	847
EcoNI	CCTNNNNNAGG	1 cut(s)	986
EcoRII	CCWGG	3 cut(s)	593, 700, 802
EcoT38I	GRGCYC	2 cut(s)	200, 849
FaeI	CATG	6 cut(s)	257, 385, 575, 625, 742, 988
FaqI	GGGAC	3 cut(s)	402, 718, 1001
FatI	CATG	6 cut(s)	253, 381, 571, 621, 738, 984
Fnu4HI	GCNGC	2 cut(s)	569, 938
FokI	GGATG	4 cut(s)	216, 905, 957, 1004
FriOI	GRGCYC	2 cut(s)	200, 849
Fsp4HI	GCNGC	2 cut(s)	569, 938
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	968
GluI	GCNGC	2 cut(s)	569, 938
GsaI	CCCAGC	2 cut(s)	389, 944
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	83, 750
HapII	CCGG	1 cut(s)	890
HhaI	GCGC	1 cut(s)	969
Hin1II	CATG	6 cut(s)	257, 385, 575, 625, 742, 988
Hin6I	GCGC	1 cut(s)	967
HinP1I	GCGC	1 cut(s)	967
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	4 cut(s)	117, 457, 493, 799
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	3 cut(s)	122, 452, 818
Hpy166II	GTNNAC	2 cut(s)	139, 286
Hpy188I	TCNGA	3 cut(s)	436, 456, 736
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	139, 286
HpyAV	CCTTC	1 cut(s)	835
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4V	TGCA	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	2 cut(s)	471, 858
Hsp92II	CATG	6 cut(s)	257, 385, 575, 625, 742, 988
HspAI	GCGC	1 cut(s)	967
Kzo9I	GATC	6 cut(s)	16, 448, 679, 786, 819, 895
LmnI	GCTCC	5 cut(s)	110, 407, 703, 844, 934
Lsp1109I	GCAGC	2 cut(s)	580, 924
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	100, 259
MalI	GATC	6 cut(s)	18, 450, 681, 788, 821, 897
MboI	GATC	6 cut(s)	16, 448, 679, 786, 819, 895
MboII	GAAGA	3 cut(s)	226, 316, 968
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	200, 849
MluCI	AATT	7 cut(s)	93, 143, 184, 276, 498, 652, 809
MmeI	TCCRAC	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	2 cut(s)	59, 960
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	3 cut(s)	595, 702, 804
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	3 cut(s)	595, 702, 804
MvnI	CGCG	2 cut(s)	715, 969
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	6 cut(s)	16, 448, 679, 786, 819, 895
NlaIII	CATG	6 cut(s)	257, 385, 575, 625, 742, 988
NlaIV	GGNNCC	2 cut(s)	450, 951
NmeAIII	GCCGAG	1 cut(s)	856
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	385
PagI	TCATGA	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	828
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	4 cut(s)	117, 457, 493, 799
PkrI	GCNGC	2 cut(s)	570, 939
PshAI	GACNNNNGTC	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	872
Psp124BI	GAGCTC	1 cut(s)	849
Psp6I	CCWGG	3 cut(s)	593, 700, 802
PspFI	CCCAGC	2 cut(s)	385, 940
PspGI	CCWGG	3 cut(s)	593, 700, 802
PspN4I	GGNNCC	2 cut(s)	450, 951
PspPI	GGNCC	2 cut(s)	614, 782
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	2 cut(s)	335, 373
RsaNI	GTAC	2 cut(s)	334, 372
SacI	GAGCTC	1 cut(s)	849
SaqAI	TTAA	2 cut(s)	59, 960
SatI	GCNGC	2 cut(s)	569, 938
Sau3AI	GATC	6 cut(s)	16, 448, 679, 786, 819, 895
Sau96I	GGNCC	2 cut(s)	614, 782
ScrFI	CCNGG	3 cut(s)	595, 702, 804
SduI	GDGCHC	2 cut(s)	200, 849
SinI	GGWCC	2 cut(s)	614, 782
Sse9I	AATT	7 cut(s)	93, 143, 184, 276, 498, 652, 809
SsiI	CCGC	3 cut(s)	179, 715, 1000
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	849
StyD4I	CCNGG	3 cut(s)	593, 700, 802
TaaI	ACNGT	1 cut(s)	691
TaqI	TCGA	2 cut(s)	757, 822
TaqII	GACCGA	1 cut(s)	799
TasI	AATT	7 cut(s)	93, 143, 184, 276, 498, 652, 809
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	4 cut(s)	117, 457, 493, 799
Tru1I	TTAA	2 cut(s)	59, 960
Tru9I	TTAA	2 cut(s)	59, 960
TscAI	CASTG	1 cut(s)	784
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	568, 937
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	109, 171, 638, 646
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	784
VpaK11BI	GGWCC	2 cut(s)	614, 782
XagI	CCTNNNNNAGG	1 cut(s)	986
XapI	RAATTY	2 cut(s)	93, 809
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.