Rorug01G0329700

UDP-glucuronic acid decarboxylase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
44841560 .. 44841808
249 bp
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UTR
Exon/CDS
Intron
Rorug01G0329700.1

Sequence Viewer

Length: 249 bp
ATGGAGTTCAAAACTATATTGGGTGGTAAGATTCCAACCTTGCTGGCTGAAGCTCTAGGCTTAGTCGAAAATGACACTGATGTTATACTAGTAACTCTGAAGAAGAAGATGGACTGGCCACTTAGAAGTAAGAATAAGAAGACGTCGCGCCCCAGCAAGAAGTCAAGTGTTGCTCCATTGTGGCTTACTTATCCTGCAGATACTGGTACTGGTTCTAGCCTTAAAGACAAGGGCAAAGGAAAGGTTTAA

Protein Analysis

82

Amino Acids

8.93

Weight (kDa)

9.94

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 146
AccII CGCG 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 69, 119
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 1 cut(s) 208
AgsI TTSAA 1 cut(s) 10
AhlI ACTAGT 1 cut(s) 88
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 146
BccI CCATC 1 cut(s) 103
BcuI ACTAGT 1 cut(s) 88
BfaI CTAG 3 cut(s) 56, 89, 216
BfmI CTRYAG 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 143
Bse1I ACTGG 3 cut(s) 119, 208, 214
BseNI ACTGG 3 cut(s) 119, 208, 214
BseYI CCCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 118
BsnI GGCC 1 cut(s) 118
BspANI GGCC 1 cut(s) 118
BspFNI CGCG 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 199
BsrI ACTGG 3 cut(s) 119, 208, 214
BssNI GRCGYC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 61, 122
BstFNI CGCG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 195
BstUI CGCG 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 207
CviJI RGCY 6 cut(s) 47, 53, 60, 118, 184, 219
CviKI_1 RGCY 6 cut(s) 47, 53, 60, 118, 184, 219
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 2 cut(s) 61, 122
EaeI YGGCCR 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 69, 119
FaiI YATR 2 cut(s) 17, 86
FspBI CTAG 3 cut(s) 56, 89, 216
GlaI GCGC 1 cut(s) 149
GsaI CCCAGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 118
HhaI GCGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 61, 122
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 1 cut(s) 143
HspAI GCGC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 6 cut(s) 29, 100, 166, 189, 195, 207
MaeI CTAG 3 cut(s) 56, 89, 216
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 4 cut(s) 112, 115, 118, 151
MlsI TGGCCA 1 cut(s) 118
MluNI TGGCCA 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 118
MseI TTAA 2 cut(s) 222, 247
Msp20I TGGCCA 1 cut(s) 118
MvnI CGCG 1 cut(s) 148
PfeI GAWTC 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 152
PstI CTGCAG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 222, 247
SetI ASST 4 cut(s) 41, 55, 146, 246
SfcI CTRYAG 1 cut(s) 195
SpeI ACTAGT 1 cut(s) 88
SspMI CTAG 3 cut(s) 56, 89, 216
TaiI ACGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 66
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 222, 247
Tru9I TTAA 2 cut(s) 222, 247
TscAI CASTG 1 cut(s) 82
TspRI CASTG 1 cut(s) 82
XspI CTAG 3 cut(s) 56, 89, 216
ZraI GACGTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.