Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002913

Physical Location & Seq

Genomic Coordinates Forward (+)

12877799 .. 12879661

Gene Structure 1863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCAACAGAAGCAACAACCAAATTCCCAGAATCCGATCTCCGTCCAATCCCACAACCACCGGATTTTCATCCAGCAATCATCGTTCCAGCTCAAAACACAACTCTTAAATTCTGGCAACTAATGGTCGCCGGTTCAATCGCTGGCTCAGTCGAACACATGGCTATGTTTCCAGTAGATACAGTCAAAACCCATATGCAAGCTCTTCGTTCATGTCCGATTAAACCAATCGGAATCCGTCAAGCTTTCCGTTCAATTATCAAAACCGATGGACCTTCTGCTTTATATAGAGGTATTTGGGCTATGGGACTTGGTGCTGGACCAGCTCACGCTGTTTATTTCTCATTCTATGAAGTCTCTAAGAAGTTTTTATCCGGTGGAAACCCTAATAACTCTGCTGCACACGCTATTTCCGGTGTTTTCGCTACTATATCTAGTGATGCTGTGTTTACTCCAATGGATATGGTTAAGCAAAGGTTGCAAATTGGGAATGGAACTTATAAAGGAGTTTGGGATTGTATCAAGAGAGTAACGCGTGAGGAAGGGTTTGGTGCTTTTTACGCTTCGTATAGAACTACTGTGTTGATGAATGCTCCGTTTACCGCTGTGCATTTCACTACTTATGAGGCGGTTAAGAGAGGTTTGAGGGAGATGTTGCCTGAGCATGCTGTTGGAGCAGAGGATGAGGAAGGTTGGTTGATTTATGCTACTGCTGGAGCTGCGGCTGGTGGGTTAGCGGCTGCTGTAACTACTCCGCTTGATGTTGTTAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGTTGTGACCGTTTCAAGAGCAGTTCAATAAGCGATGTGTTCCGTACAATAGTGAAGAAAGACGGTTATAGAGGACTTGCTAGAGGATGGCTACCAAGAATGCTCTTCCATGCTCCAGCAGCTGCGATTTGCTGGTCCACTTATGAAACAGTCAAATCTTTCTTTCAAGATCTCAATGGTGAAGCAAACGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0008152 GO:0008324 GO:0008380 GO:0009987 GO:0010467 GO:0015075 GO:0015093 GO:0015318 GO:0015684 GO:0016020 GO:0016021 GO:0016070 GO:0019866 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0034641 GO:0034755 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046873 GO:0046915 GO:0048250 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071704 GO:0072509 GO:0072511 GO:0090304 GO:0097286 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901360 GO:1903874 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

331

Amino Acids

35.96

Weight (kDa)

8.82

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	36 - 126	2.6e-23	Mitochondrial carrier protein
Mito_carr	PF00153	130 - 217	7.9e-23	Mitochondrial carrier protein
Mito_carr	PF00153	231 - 323	3.3e-26	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07030 AT2G30160
fragaria_vesca	FvH4_3g39670 FvH4_6g10760
malus_domestica	MD03G1055400.v1.1 MD04G1164600.v1.1 MD11G1056500.v1.1 MD12G1178600.v1.1
prunus_persica	Prupe.6G049200_v2.0.a1 Prupe.6G283800_v2.0.a1
pyrus_communis	pycom03g04410 pycom04g14690 pycom11g04760 pycom12g16860
rosa_chinensis	RchiOBHm_Chr3g0461801 RchiOBHm_Chr5g0071521
rosa_laevigata	RLG00000024897 RLG00000036221
rosa_multiflora	Rmu_co8336553.1_g000001 Rmu_sc0004308.1_g000012 Rmu_sc0005745.1_g000006 Rmu_sc0007777.1_g000002 Rmu_sc0022017.1_g000001 Rmu_sc0022018.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009630 Rroxscaffold_6G00417910
rosa_rugosa	Rorug03G0053800 Rorug05G0412800
rosa_samantha	Rh3AG111800 Rh3BG115100 Rh3CG117300 Rh3DG116800 Rh5AG469000 Rh5BG488100 Rh5CG512200 Rh5DG498900
rosa_wichuraiana	Rw3G009480 Rw5G043570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
AccII	CGCG	1 cut(s)	535
AciI	CCGC	5 cut(s)	603, 629, 722, 737, 755
AcsI	RAATTY	2 cut(s)	23, 110
AfaI	GTAC	1 cut(s)	844
AflIII	ACRYGT	1 cut(s)	533
AgsI	TTSAA	5 cut(s)	138, 255, 814, 825, 965
AluBI	AGCT	7 cut(s)	92, 203, 245, 326, 719, 920, 992
AluI	AGCT	7 cut(s)	92, 203, 245, 326, 719, 920, 992
Alw26I	GTCTC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	920
ApeKI	GCWGC	6 cut(s)	398, 719, 740, 917, 920, 989
ApoI	RAATTY	2 cut(s)	23, 110
AspS9I	GGNCC	3 cut(s)	272, 320, 933
AsuHPI	GGTGA	1 cut(s)	989
AvaII	GGWCC	3 cut(s)	272, 320, 933
BbvI	GCAGC	5 cut(s)	385, 706, 727, 907, 929
BccI	CCATC	2 cut(s)	263, 879
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	2 cut(s)	435, 879
BglII	AGATCT	1 cut(s)	967
BisI	GCNGC	8 cut(s)	399, 720, 723, 738, 741, 918, 921, 990
BlsI	GCNGC	8 cut(s)	400, 721, 724, 739, 742, 919, 922, 991
Bme18I	GGWCC	3 cut(s)	272, 320, 933
BmgT120I	GGNCC	3 cut(s)	272, 320, 933
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	2 cut(s)	735, 897
Bpu10I	CCTNAGC	1 cut(s)	660
BsaBI	GATNNNNATC	1 cut(s)	69
BsaWI	WCCGGW	3 cut(s)	61, 374, 413
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	788
Bse8I	GATNNNNATC	1 cut(s)	69
BseGI	GGATG	3 cut(s)	70, 688, 890
BseJI	GATNNNNATC	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	788
BseMII	CTCAG	2 cut(s)	162, 651
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	5 cut(s)	385, 706, 727, 907, 929
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	535
BsiSI	CCGG	4 cut(s)	62, 132, 375, 414
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	2 cut(s)	595, 903
Bsp143I	GATC	2 cut(s)	37, 967
BspACI	CCGC	5 cut(s)	603, 629, 722, 737, 755
BspCNI	CTCAG	2 cut(s)	161, 652
BspFNI	CGCG	1 cut(s)	535
BspQI	GCTCTTC	2 cut(s)	210, 908
BsrDI	GCAATG	1 cut(s)	788
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	131
BssMI	GATC	2 cut(s)	37, 967
Bst4CI	ACNGT	5 cut(s)	184, 580, 809, 863, 949
Bst6I	CTCTTC	2 cut(s)	210, 908
BstAPI	GCANNNNNTGC	1 cut(s)	478
BstC8I	GCNNGC	3 cut(s)	145, 201, 666
BstDEI	CTNAG	3 cut(s)	148, 360, 660
BstF5I	GGATG	3 cut(s)	70, 688, 890
BstFNI	CGCG	1 cut(s)	535
BstKTI	GATC	2 cut(s)	40, 970
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	2 cut(s)	37, 967
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 323, 404, 478, 560, 674, 719, 917, 989
BstNSI	RCATGY	1 cut(s)	668
BstUI	CGCG	1 cut(s)	535
BstV1I	GCAGC	5 cut(s)	385, 706, 727, 907, 929
BstX2I	RGATCY	1 cut(s)	967
BstYI	RGATCY	1 cut(s)	967
BtgZI	GCGATG	1 cut(s)	846
BtsCI	GGATG	3 cut(s)	70, 688, 890
Cac8I	GCNNGC	3 cut(s)	145, 201, 666
CaiI	CAGNNNCTG	1 cut(s)	920
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	272, 320, 933
CseI	GACGC	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	843
CviAII	CATG	4 cut(s)	160, 213, 665, 908
CviQI	GTAC	1 cut(s)	843
DdeI	CTNAG	3 cut(s)	148, 360, 660
DpnI	GATC	2 cut(s)	39, 969
DpnII	GATC	2 cut(s)	37, 967
Eam1104I	CTCTTC	2 cut(s)	210, 908
EarI	CTCTTC	2 cut(s)	210, 908
Eco47I	GGWCC	3 cut(s)	272, 320, 933
FaeI	CATG	4 cut(s)	163, 216, 668, 911
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	4 cut(s)	159, 212, 664, 907
FauNDI	CATATG	1 cut(s)	195
Fnu4HI	GCNGC	8 cut(s)	399, 720, 723, 738, 741, 918, 921, 990
FokI	GGATG	3 cut(s)	57, 695, 897
Fsp4HI	GCNGC	8 cut(s)	399, 720, 723, 738, 741, 918, 921, 990
FspBI	CTAG	2 cut(s)	435, 879
GluI	GCNGC	8 cut(s)	399, 720, 723, 738, 741, 918, 921, 990
GsuI	CTGGAG	2 cut(s)	735, 897
HapII	CCGG	4 cut(s)	62, 132, 375, 414
HgaI	GACGC	1 cut(s)	781
Hin1II	CATG	4 cut(s)	163, 216, 668, 911
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	2 cut(s)	32, 234
HpaII	CCGG	4 cut(s)	62, 132, 375, 414
HphI	GGTGA	1 cut(s)	989
Hpy166II	GTNNAC	3 cut(s)	450, 600, 936
Hpy188I	TCNGA	3 cut(s)	37, 219, 233
Hpy188III	TCNNGA	3 cut(s)	523, 814, 965
Hpy8I	GTNNAC	3 cut(s)	450, 600, 936
HpyAV	CCTTC	3 cut(s)	285, 536, 683
HpyCH4III	ACNGT	5 cut(s)	184, 580, 809, 863, 949
HpyCH4V	TGCA	5 cut(s)	199, 401, 481, 610, 781
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 323, 404, 478, 560, 674, 719, 917, 989
HpyF3I	CTNAG	3 cut(s)	148, 360, 660
Hsp92II	CATG	4 cut(s)	163, 216, 668, 911
Kzo9I	GATC	2 cut(s)	37, 967
LguI	GCTCTTC	2 cut(s)	210, 908
LmnI	GCTCC	4 cut(s)	598, 674, 716, 916
Lsp1109I	GCAGC	5 cut(s)	385, 706, 727, 907, 929
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	435, 879
MaeIII	GTNAC	3 cut(s)	529, 745, 803
MalI	GATC	2 cut(s)	39, 969
MboI	GATC	2 cut(s)	37, 967
MboII	GAAGA	3 cut(s)	197, 865, 895
MflI	RGATCY	1 cut(s)	967
MluCI	AATT	4 cut(s)	23, 110, 255, 483
MluI	ACGCGT	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	9 cut(s)	284, 532, 619, 632, 639, 673, 679, 863, 875
MseI	TTAA	5 cut(s)	108, 222, 468, 633, 768
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	605, 920
MspI	CCGG	4 cut(s)	62, 132, 375, 414
Mva1269I	GAATGC	2 cut(s)	595, 903
MvnI	CGCG	1 cut(s)	535
MwoI	GCNNNNNNNGC	9 cut(s)	11, 323, 404, 478, 560, 674, 719, 917, 989
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	2 cut(s)	37, 967
NlaIII	CATG	4 cut(s)	163, 216, 668, 911
NmuCI	GTSAC	1 cut(s)	803
NspI	RCATGY	1 cut(s)	668
PaeI	GCATGC	1 cut(s)	668
PciSI	GCTCTTC	2 cut(s)	210, 908
PctI	GAATGC	2 cut(s)	595, 903
PfeI	GAWTC	2 cut(s)	32, 234
PkrI	GCNGC	8 cut(s)	400, 721, 724, 739, 742, 919, 922, 991
PsiI	TTATAA	1 cut(s)	501
PspPI	GGNCC	3 cut(s)	272, 320, 933
PstNI	CAGNNNCTG	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	967
PvuII	CAGCTG	1 cut(s)	920
RsaI	GTAC	1 cut(s)	844
RsaNI	GTAC	1 cut(s)	843
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	2 cut(s)	210, 908
SaqAI	TTAA	5 cut(s)	108, 222, 468, 633, 768
SatI	GCNGC	8 cut(s)	399, 720, 723, 738, 741, 918, 921, 990
Sau3AI	GATC	2 cut(s)	37, 967
Sau96I	GGNCC	3 cut(s)	272, 320, 933
SfaNI	GCATC	1 cut(s)	430
SinI	GGWCC	3 cut(s)	272, 320, 933
SmiMI	CAYNNNNRTG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	668
Sse9I	AATT	4 cut(s)	23, 110, 255, 483
SsiI	CCGC	5 cut(s)	603, 629, 722, 737, 755
SspMI	CTAG	2 cut(s)	435, 879
TaaI	ACNGT	5 cut(s)	184, 580, 809, 863, 949
TaqI	TCGA	1 cut(s)	153
TasI	AATT	4 cut(s)	23, 110, 255, 483
TauI	GCSGC	2 cut(s)	725, 740
TfiI	GAWTC	2 cut(s)	32, 234
Tru1I	TTAA	5 cut(s)	108, 222, 468, 633, 768
Tru9I	TTAA	5 cut(s)	108, 222, 468, 633, 768
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	6 cut(s)	398, 719, 740, 917, 920, 989
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	5 cut(s)	59, 201, 366, 602, 957
TspGWI	ACGGA	5 cut(s)	32, 227, 239, 585, 830
VpaK11BI	GGWCC	3 cut(s)	272, 320, 933
XapI	RAATTY	2 cut(s)	23, 110
XceI	RCATGY	1 cut(s)	668
XspI	CTAG	2 cut(s)	435, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.