Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002913

Physical Location & Seq

Genomic Coordinates Forward (+)

19129668 .. 19131062

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCACGGATGTCTCCGCCGCATTCCGACCCGTTCCTCAACCCCACGACTTCCACCCTGAAATATCGGTATCCCCCTCCTCCGCCCACGACGGCCTAGAGTTCTGGCAGTTCATGATAGCCGGCTCCATAGCGGGCCTAGTTGAACACATGGCTATGTTCCCAGTTGACACCCTCAAAACCCGCATGCAGGTTTTTGGCGGGTCCTGCTCCGTTCAACCTATTGGAGTTAGACAGGCCCTCGGCTCGATTCTGAAGCTCGAAGGCCCCGCAGGGCTCTACCGCGGCATCGGCGCAATGGGGCTCGGAGCAGGACCTGCCCATGCAGTTTATTTCTCAGTGTACGAGATGTTCAAGGAGTATTTCACACGTGGGAATCCCAACAGCTCGGTGGCGCATGCGGTTTCTGGGGTGTTTGCGACCGTTGCAAGCGACGCGGTGATCACACCGATGGACGTGGTGAAACAGAGGCTGCAGCTGCAGAGCAGTCCGTACAAGGGAGTTGCGGATTGTGTGAGGAGGGTTTTAGTGGAAGAAGGGGTTGGAGCATTTTACAAGTCGTACAGGACGACTGTCGTGATGAATGCCCCGTTTACTGCCGTCCATTTCGCTACGTATGAGGCAGCGAAACGAGGGCTGATGGAGGTGTCGCCGGAGAGTGCGAACGACGAGAGGCTGGTGGTTCATGCCACTGCAGGTGCGGCTGCTGGGGCTTTAGCGGCGGCTGTGACCACCCCGCTTGATGTTGTGAAAACTCAATTGCAGTGCCAGGGGGTTTGCGGATGCGATAGATTTTTGAGCAACTCGATATGGGATGTTGTTCGAAGCCTGGTGATGAAGGATGGATACCGCAGTCTTATGCGAGGTTGGATTCCAAGGATGCTCTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCAACTTATGAAACATCAAAAACTTTCTTTCAAGAACTCAATGGCAGTGACAGTTCCAGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0034755 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048250 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0097286 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

327

Amino Acids

35.12

Weight (kDa)

7.11

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07030 AT2G30160
fragaria_vesca	FvH4_3g39670 FvH4_6g10760
malus_domestica	MD03G1055400.v1.1 MD04G1164600.v1.1 MD11G1056500.v1.1 MD12G1178600.v1.1
prunus_persica	Prupe.6G049200_v2.0.a1 Prupe.6G283800_v2.0.a1
pyrus_communis	pycom03g04410 pycom04g14690 pycom11g04760 pycom12g16860
rosa_chinensis	RchiOBHm_Chr3g0461801 RchiOBHm_Chr5g0071521
rosa_laevigata	RLG00000024897 RLG00000036221
rosa_multiflora	Rmu_co8336553.1_g000001 Rmu_sc0004308.1_g000012 Rmu_sc0005745.1_g000006 Rmu_sc0007777.1_g000002 Rmu_sc0022017.1_g000001 Rmu_sc0022018.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009630 Rroxscaffold_6G00417910
rosa_rugosa	Rorug03G0053800 Rorug05G0412800
rosa_samantha	Rh3AG111800 Rh3BG115100 Rh3CG117300 Rh3DG116800 Rh5AG469000 Rh5BG488100 Rh5CG512200 Rh5DG498900
rosa_wichuraiana	Rw3G009480 Rw5G043570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	686
Acc36I	ACCTGC	3 cut(s)	181, 325, 686
AccII	CGCG	2 cut(s)	285, 437
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	275
AcvI	CACGTG	1 cut(s)	371
AfaI	GTAC	3 cut(s)	344, 494, 563
AfiI	CCNNNNNNNGG	2 cut(s)	190, 497
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	146, 218, 355, 947
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	3 cut(s)	768, 828, 971
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	3 cut(s)	259, 387, 478
AluI	AGCT	3 cut(s)	259, 387, 478
Alw26I	GTCTC	1 cut(s)	19
AlwNI	CAGNNNCTG	3 cut(s)	317, 472, 978
AoxI	GGCC	5 cut(s)	3, 94, 136, 237, 265
ApeKI	GCWGC	7 cut(s)	472, 475, 478, 623, 704, 899, 902
AspLEI	GCGC	2 cut(s)	296, 397
AspS9I	GGNCC	6 cut(s)	136, 204, 238, 266, 314, 975
AsuHPI	GGTGA	3 cut(s)	451, 472, 844
AsuII	TTCGAA	1 cut(s)	823
AvaII	GGWCC	3 cut(s)	204, 314, 975
BaeI	ACNNNNGTAYC	2 cut(s)	838, 871
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	279, 306
BarI	GAAGNNNNNNTAC	2 cut(s)	830, 862
BbrPI	CACGTG	1 cut(s)	371
BbvI	GCAGC	7 cut(s)	459, 465, 487, 635, 691, 886, 889
BccI	CCATC	3 cut(s)	445, 634, 836
BceAI	ACGGC	2 cut(s)	109, 584
BciT130I	CCWGG	3 cut(s)	770, 830, 973
BciVI	GTATCC	2 cut(s)	82, 839
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	98, 140
BfmI	CTRYAG	3 cut(s)	473, 479, 693
BfuAI	ACCTGC	3 cut(s)	181, 325, 686
BfuI	GTATCC	2 cut(s)	82, 839
Bme1390I	CCNGG	3 cut(s)	770, 830, 973
Bme18I	GGWCC	3 cut(s)	204, 314, 975
BmgBI	CACGTC	1 cut(s)	457
BmgT120I	GGNCC	6 cut(s)	136, 204, 238, 266, 314, 975
BmiI	GGNNCC	3 cut(s)	127, 205, 268
BmrFI	CCNGG	3 cut(s)	770, 830, 973
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	3 cut(s)	297, 773, 870
BmuI	ACTGGG	1 cut(s)	158
BoxI	GACNNNNGTC	1 cut(s)	572
Bpu14I	TTCGAA	1 cut(s)	823
BsaAI	YACGTR	2 cut(s)	371, 615
BsaJI	CCNNGG	5 cut(s)	6, 241, 283, 769, 875
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 497
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	3 cut(s)	770, 830, 973
BseDI	CCNNGG	5 cut(s)	6, 241, 283, 769, 875
BseGI	GGATG	5 cut(s)	16, 788, 820, 847, 885
BseLI	CCNNNNNNNGG	2 cut(s)	190, 497
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	2 cut(s)	70, 532
BseXI	GCAGC	7 cut(s)	459, 465, 487, 635, 691, 886, 889
BseYI	CCCAGC	1 cut(s)	707
Bsh1236I	CGCG	2 cut(s)	285, 437
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	5 cut(s)	5, 96, 138, 239, 267
BsiEI	CGRYCG	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	123, 653
BslI	CCNNNNNNNGG	2 cut(s)	190, 497
BsmAI	GTCTC	1 cut(s)	19
BsmI	GAATGC	2 cut(s)	23, 589
BsnI	GGCC	5 cut(s)	5, 96, 138, 239, 267
Bsp119I	TTCGAA	1 cut(s)	823
Bsp1286I	GDGCHC	2 cut(s)	279, 306
Bsp143I	GATC	1 cut(s)	441
BspANI	GGCC	5 cut(s)	5, 96, 138, 239, 267
BspCNI	CTCAG	1 cut(s)	350
BspFNI	CGCG	2 cut(s)	285, 437
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	127, 205, 268
BspMAI	CTGCAG	3 cut(s)	477, 483, 697
BspMI	ACCTGC	3 cut(s)	181, 325, 686
BspQI	GCTCTTC	1 cut(s)	890
BspT104I	TTCGAA	1 cut(s)	823
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	5 cut(s)	6, 241, 283, 769, 875
BssMI	GATC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	875
Bst2UI	CCWGG	3 cut(s)	770, 830, 973
Bst4CI	ACNGT	3 cut(s)	424, 574, 968
Bst6I	CTCTTC	1 cut(s)	890
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstBAI	YACGTR	2 cut(s)	371, 615
BstBI	TTCGAA	1 cut(s)	823
BstC8I	GCNNGC	5 cut(s)	124, 136, 188, 399, 430
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	2 cut(s)	6, 283
BstF5I	GGATG	5 cut(s)	16, 788, 820, 847, 885
BstFNI	CGCG	2 cut(s)	285, 437
BstHHI	GCGC	2 cut(s)	296, 397
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	441
BstMCI	CGRYCG	1 cut(s)	423
BstNI	CCWGG	3 cut(s)	770, 830, 973
BstNSI	RCATGY	2 cut(s)	190, 401
BstPAI	GACNNNNGTC	1 cut(s)	572
BstSCI	CCNGG	3 cut(s)	768, 828, 971
BstSFI	CTRYAG	3 cut(s)	473, 479, 693
BstSNI	TACGTA	1 cut(s)	615
BstUI	CGCG	2 cut(s)	285, 437
BstV1I	GCAGC	7 cut(s)	459, 465, 487, 635, 691, 886, 889
BsuI	GTATCC	2 cut(s)	82, 839
BsuRI	GGCC	5 cut(s)	5, 96, 138, 239, 267
BtgI	CCRYGG	2 cut(s)	6, 283
BtrI	CACGTC	1 cut(s)	457
BtsCI	GGATG	5 cut(s)	16, 788, 820, 847, 885
BtsI	GCAGTG	3 cut(s)	690, 770, 967
BtsIMutI	CAGTG	4 cut(s)	345, 690, 770, 967
BveI	ACCTGC	3 cut(s)	181, 325, 686
Cac8I	GCNNGC	5 cut(s)	124, 136, 188, 399, 430
CaiI	CAGNNNCTG	3 cut(s)	317, 472, 978
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	2 cut(s)	296, 397
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	6 cut(s)	136, 204, 238, 266, 314, 975
Cfr42I	CCGCGG	1 cut(s)	286
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	3 cut(s)	343, 493, 562
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	7 cut(s)	115, 151, 187, 323, 398, 686, 890
CviQI	GTAC	3 cut(s)	343, 493, 562
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	890
EarI	CTCTTC	1 cut(s)	890
EciI	GGCGGA	2 cut(s)	7, 73
Eco105I	TACGTA	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	875
Eco24I	GRGCYC	2 cut(s)	279, 306
Eco47I	GGWCC	3 cut(s)	204, 314, 975
Eco57I	CTGAAG	1 cut(s)	275
Eco72I	CACGTG	1 cut(s)	371
EcoO109I	RGGNCCY	5 cut(s)	204, 238, 266, 314, 975
EcoRII	CCWGG	3 cut(s)	768, 828, 971
EcoT14I	CCWWGG	1 cut(s)	875
EcoT38I	GRGCYC	2 cut(s)	279, 306
ErhI	CCWWGG	1 cut(s)	875
FaeI	CATG	7 cut(s)	118, 154, 190, 326, 401, 689, 893
FatI	CATG	7 cut(s)	114, 150, 186, 322, 397, 685, 889
FauI	CCCGC	5 cut(s)	127, 191, 194, 277, 744
FbaI	TGATCA	1 cut(s)	441
FokI	GGATG	5 cut(s)	23, 795, 827, 854, 892
FriOI	GRGCYC	2 cut(s)	279, 306
FspBI	CTAG	2 cut(s)	98, 140
GlaI	GCGC	2 cut(s)	295, 396
GsaI	CCCAGC	1 cut(s)	711
HaeIII	GGCC	5 cut(s)	5, 96, 138, 239, 267
HapII	CCGG	2 cut(s)	123, 653
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	2 cut(s)	296, 397
Hin1II	CATG	7 cut(s)	118, 154, 190, 326, 401, 689, 893
Hin6I	GCGC	2 cut(s)	294, 395
HinP1I	GCGC	2 cut(s)	294, 395
HincII	GTYRAC	2 cut(s)	169, 918
HindII	GTYRAC	2 cut(s)	169, 918
HinfI	GANTC	3 cut(s)	250, 376, 871
HpaII	CCGG	2 cut(s)	123, 653
HphI	GGTGA	3 cut(s)	451, 472, 844
Hpy166II	GTNNAC	4 cut(s)	169, 343, 594, 918
Hpy188I	TCNGA	3 cut(s)	29, 255, 308
Hpy188III	TCNNGA	3 cut(s)	115, 577, 947
Hpy8I	GTNNAC	4 cut(s)	169, 343, 594, 918
Hpy99I	CGWCG	3 cut(s)	95, 437, 671
HpyAV	CCTTC	3 cut(s)	257, 530, 832
HpyCH4III	ACNGT	3 cut(s)	424, 574, 968
HpyCH4IV	ACGT	3 cut(s)	370, 456, 614
HpyCH4V	TGCA	8 cut(s)	190, 326, 428, 475, 481, 695, 763, 905
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	3 cut(s)	370, 456, 614
Hsp92II	CATG	7 cut(s)	118, 154, 190, 326, 401, 689, 893
HspAI	GCGC	2 cut(s)	294, 395
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	441
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	441
LguI	GCTCTTC	1 cut(s)	890
LmnI	GCTCC	4 cut(s)	131, 215, 308, 545
Lsp1109I	GCAGC	7 cut(s)	459, 465, 487, 635, 691, 886, 889
LweI	GCATC	3 cut(s)	297, 773, 870
MaeI	CTAG	2 cut(s)	98, 140
MaeII	ACGT	3 cut(s)	370, 456, 614
MaeIII	GTNAC	2 cut(s)	727, 962
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	2 cut(s)	545, 877
MfeI	CAATTG	1 cut(s)	758
MhlI	GDGCHC	2 cut(s)	279, 306
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	758, 906
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	52, 523, 848
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	155, 449
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	285, 478
MspI	CCGG	2 cut(s)	123, 653
MspR9I	CCNGG	3 cut(s)	770, 830, 973
MunI	CAATTG	1 cut(s)	758
Mva1269I	GAATGC	2 cut(s)	23, 589
MvaI	CCWGG	3 cut(s)	770, 830, 973
MvnI	CGCG	2 cut(s)	285, 437
NaeI	GCCGGC	1 cut(s)	124
NdeII	GATC	1 cut(s)	441
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	7 cut(s)	118, 154, 190, 326, 401, 689, 893
NlaIV	GGNNCC	3 cut(s)	127, 205, 268
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	2 cut(s)	727, 962
NspI	RCATGY	2 cut(s)	190, 401
NspV	TTCGAA	1 cut(s)	823
PaeI	GCATGC	2 cut(s)	190, 401
PagI	TCATGA	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	686
PciSI	GCTCTTC	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PctI	GAATGC	2 cut(s)	23, 589
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	250, 376, 871
PfoI	TCCNGGA	1 cut(s)	971
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
Ppu21I	YACGTR	2 cut(s)	371, 615
PpuMI	RGGWCCY	3 cut(s)	204, 314, 975
PshAI	GACNNNNGTC	1 cut(s)	572
Psp5II	RGGWCCY	3 cut(s)	204, 314, 975
Psp6I	CCWGG	3 cut(s)	768, 828, 971
PspCI	CACGTG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	707
PspGI	CCWGG	3 cut(s)	768, 828, 971
PspN4I	GGNNCC	3 cut(s)	127, 205, 268
PspPI	GGNCC	6 cut(s)	136, 204, 238, 266, 314, 975
PspPPI	RGGWCCY	3 cut(s)	204, 314, 975
PsrI	GAACNNNNNNTAC	2 cut(s)	335, 367
PstI	CTGCAG	3 cut(s)	477, 483, 697
PstNI	CAGNNNCTG	3 cut(s)	317, 472, 978
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	3 cut(s)	344, 494, 563
RsaNI	GTAC	3 cut(s)	343, 493, 562
RseI	CAYNNNNRTG	2 cut(s)	155, 449
SacII	CCGCGG	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	890
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	6 cut(s)	136, 204, 238, 266, 314, 975
ScrFI	CCNGG	3 cut(s)	770, 830, 973
SduI	GDGCHC	2 cut(s)	279, 306
SfaNI	GCATC	3 cut(s)	297, 773, 870
SfcI	CTRYAG	3 cut(s)	473, 479, 693
Sfr303I	CCGCGG	1 cut(s)	286
SfuI	TTCGAA	1 cut(s)	823
SgrBI	CCGCGG	1 cut(s)	286
SinI	GGWCC	3 cut(s)	204, 314, 975
SmiMI	CAYNNNNRTG	2 cut(s)	155, 449
SnaBI	TACGTA	1 cut(s)	615
SphI	GCATGC	2 cut(s)	190, 401
Sse9I	AATT	2 cut(s)	758, 906
SspMI	CTAG	2 cut(s)	98, 140
StyD4I	CCNGG	3 cut(s)	768, 828, 971
StyI	CCWWGG	1 cut(s)	875
TaaI	ACNGT	3 cut(s)	424, 574, 968
TaiI	ACGT	3 cut(s)	373, 459, 617
TaqI	TCGA	4 cut(s)	248, 261, 806, 823
TasI	AATT	2 cut(s)	758, 906
TauI	GCSGC	5 cut(s)	23, 288, 704, 722, 725
TfiI	GAWTC	3 cut(s)	250, 376, 871
TscAI	CASTG	4 cut(s)	345, 697, 770, 967
TseFI	GTSAC	2 cut(s)	727, 962
TseI	GCWGC	7 cut(s)	472, 475, 478, 623, 704, 899, 902
Tsp45I	GTSAC	2 cut(s)	727, 962
TspDTI	ATGAA	5 cut(s)	103, 596, 674, 851, 939
TspGWI	ACGGA	3 cut(s)	23, 202, 480
TspRI	CASTG	4 cut(s)	345, 697, 770, 967
VpaK11BI	GGWCC	3 cut(s)	204, 314, 975
XceI	RCATGY	2 cut(s)	190, 401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XspI	CTAG	2 cut(s)	98, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.