Rw5G043570

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
76471028 .. 76472802
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043570.1

Sequence Viewer

Length: 891 bp
ATGGCCACAGACGCAAAGCCCAAGTTCCAAAACCCGGACTTCCGCCCGATTCCGCAGCAGCCCACCGACTACGGCCCACCGGACCTCGCCGCTGCCTCCTCCCACGACGGCCTACACTTCTGGCAGTTCATGATCGCCGGCTCAATCGCCGGCATGGTCGAGCACATGGCCATGTTCCCCGTCGACACCGTCAAAACCCATATGCAAGCTCTCGGGTCCTGCCCGATTAAGTCGGTCGGAATCCGGCAGGCCCTCGGCTCCATTATGAAGATCGAGGGCCCCGCCGGGCTCTACCGCGGCATTGCCGCCATGGGCCTCGGCGCCGGCCCGGCCCACGCCGTCTACTTCTCGGTCTACGAAATCTCCAAGAAGTATTTTTCCGGCGGGAATCCCAACAACTCCGCCGCCCACGCCGTCTCCGGAGTGTTTAGGGAAGATGGGATTAGAGCCTTTTACGCTAGTTATAGGACTACTGTGTTGATGAATGCGCCGTTCACGGCGGTGCATTTCGCCACGTATGAGGCCGTGAAGAAGGGGTTGATGGAGATATCGCCGGAGCATGCGGATGAGGAGAGGCTGATTGTTCATGCTACCGCTGGTGCTGCAGCTGGAGGATTGGCCTCAGTGGTCACCACGCCGCTTGATGTGGTCAAAACTCAATTACAGTGTCAGGGCATTTGCGGGTGTGACAGATTTAAAAGTGGTTCGATTGGAGATGTTGTTCGAACAATACTGAGAAAGGATGGATATAGAGGGCTTGTGAGAGGATGGGCTCCGAGAATGCTATTCCATGCCCCTGCTGCTGCTATCTGCTGGTCAACATATGAGGCTTCGAAGACCTTCTTCCAAGAACTCAATGGTGGTGGTAGTAACAGTGGCACTGTAACCTGA

Protein Analysis

296

Amino Acids

31.57

Weight (kDa)

8.54

Isoelectric Point (pI)

21.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 38 - 128 3.6e-22 Mitochondrial carrier protein
Mito_carr PF00153 132 - 182 5.3e-09 Mitochondrial carrier protein
Mito_carr PF00153 192 - 284 2.5e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccI GTMKAC 3 cut(s) 183, 342, 354
AccII CGCG 1 cut(s) 297
AccIII TCCGGA 1 cut(s) 419
AcoI YGGCCR 2 cut(s) 3, 168
AcyI GRCGYC 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 500
AloI GAACNNNNNNTCC 2 cut(s) 705, 737
AluBI AGCT 2 cut(s) 209, 608
AluI AGCT 2 cut(s) 209, 608
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 419
ApaI GGGCCC 1 cut(s) 281
ApeKI GCWGC 7 cut(s) 55, 58, 92, 602, 605, 800, 803
Asp700I GAANNNNTTC 1 cut(s) 839
AspLEI GCGC 2 cut(s) 323, 490
AspS9I GGNCC 9 cut(s) 74, 82, 216, 250, 277, 278, 313, 326, 331
AsuC2I CCSGG 3 cut(s) 35, 286, 329
AsuHPI GGTGA 1 cut(s) 622
AsuII TTCGAA 2 cut(s) 724, 833
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 2 cut(s) 82, 216
BaeGI GKGCMC 1 cut(s) 281
BalI TGGCCA 2 cut(s) 5, 170
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 3 cut(s) 281, 291, 775
BbsI GAAGAC 1 cut(s) 842
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 7 cut(s) 67, 70, 79, 589, 617, 787, 790
BccI CCATC 4 cut(s) 431, 535, 737, 762
BceAI ACGGC 7 cut(s) 88, 124, 323, 398, 475, 509, 513
BcnI CCSGG 3 cut(s) 35, 286, 329
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 459
BfmI CTRYAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 324
BglI GCCNNNNNGGC 1 cut(s) 329
Bme1390I CCNGG 3 cut(s) 35, 286, 329
Bme18I GGWCC 2 cut(s) 82, 216
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 9 cut(s) 74, 82, 216, 250, 277, 278, 313, 326, 331
BmiI GGNNCC 6 cut(s) 217, 259, 279, 280, 322, 774
BmrFI CCNGG 3 cut(s) 35, 286, 329
BpiI GAAGAC 1 cut(s) 842
BpmI CTGGAG 1 cut(s) 630
Bpu14I TTCGAA 2 cut(s) 724, 833
BpuMI CCSGG 3 cut(s) 35, 286, 329
BsaAI YACGTR 1 cut(s) 516
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 4 cut(s) 253, 295, 309, 316
BsaWI WCCGGW 2 cut(s) 79, 419
BsaXI ACNNNNNCTCC 6 cut(s) 347, 377, 401, 431, 705, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 3 cut(s) 137, 149, 323
Bse3DI GCAATG 1 cut(s) 300
BseAI TCCGGA 1 cut(s) 419
BseDI CCNNGG 4 cut(s) 253, 295, 309, 316
BseGI GGATG 3 cut(s) 571, 748, 773
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 636, 725
BseRI GAGGAG 2 cut(s) 88, 584
BseSI GKGCMC 1 cut(s) 281
BseXI GCAGC 7 cut(s) 67, 70, 79, 589, 617, 787, 790
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 421
BsmBI CGTCTC 1 cut(s) 421
BsmI GAATGC 2 cut(s) 490, 786
BsoBI CYCGRG 1 cut(s) 212
Bsp119I TTCGAA 2 cut(s) 724, 833
Bsp120I GGGCCC 1 cut(s) 277
Bsp1286I GDGCHC 4 cut(s) 165, 281, 291, 775
Bsp13I TCCGGA 1 cut(s) 419
Bsp143I GATC 2 cut(s) 132, 270
Bsp19I CCATGG 1 cut(s) 309
BspCNI CTCAG 2 cut(s) 635, 726
BspEI TCCGGA 1 cut(s) 419
BspFNI CGCG 1 cut(s) 297
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 6 cut(s) 217, 259, 279, 280, 322, 774
BspMAI CTGCAG 1 cut(s) 607
BspT104I TTCGAA 2 cut(s) 724, 833
BspT107I GGYRCC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 3 cut(s) 137, 149, 323
BssAI RCCGGY 3 cut(s) 137, 149, 323
BssECI CCNNGG 4 cut(s) 253, 295, 309, 316
BssMI GATC 2 cut(s) 132, 270
BssNI GRCGYC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 309
Bst4CI ACNGT 5 cut(s) 190, 475, 666, 875, 883
BstACI GRCGYC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 516
BstBI TTCGAA 2 cut(s) 724, 833
BstC8I GCNNGC 6 cut(s) 139, 151, 207, 249, 325, 561
BstDEI CTNAG 2 cut(s) 622, 734
BstDSI CCRYGG 2 cut(s) 295, 309
BstEII GGTNACC 1 cut(s) 628
BstF5I GGATG 3 cut(s) 571, 748, 773
BstFNI CGCG 1 cut(s) 297
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 2 cut(s) 323, 490
BstKTI GATC 2 cut(s) 135, 273
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 2 cut(s) 132, 270
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 6 cut(s) 11, 329, 410, 455, 602, 800
BstNSI RCATGY 1 cut(s) 563
BstPI GGTNACC 1 cut(s) 628
BstSCI CCNGG 3 cut(s) 33, 284, 327
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 281
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 7 cut(s) 67, 70, 79, 589, 617, 787, 790
BstV2I GAAGAC 1 cut(s) 842
BtgI CCRYGG 2 cut(s) 295, 309
BtsCI GGATG 3 cut(s) 571, 748, 773
BtsIMutI CAGTG 4 cut(s) 630, 671, 879, 880
Cac8I GCNNGC 6 cut(s) 139, 151, 207, 249, 325, 561
CciI TCATGA 1 cut(s) 129
CfoI GCGC 2 cut(s) 323, 490
Cfr10I RCCGGY 3 cut(s) 137, 149, 323
Cfr13I GGNCC 9 cut(s) 74, 82, 216, 250, 277, 278, 313, 326, 331
Cfr42I CCGCGG 1 cut(s) 298
CseI GACGC 1 cut(s) 20
CspCI CAANNNNNGTGG 4 cut(s) 622, 657, 844, 879
CviAII CATG 8 cut(s) 130, 154, 166, 172, 310, 560, 587, 791
DdeI CTNAG 2 cut(s) 622, 734
DinI GGCGCC 1 cut(s) 322
DpnI GATC 2 cut(s) 134, 272
DpnII GATC 2 cut(s) 132, 270
DraI TTTAAA 1 cut(s) 697
EaeI YGGCCR 2 cut(s) 3, 168
EciI GGCGGA 2 cut(s) 32, 391
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 3 cut(s) 281, 291, 775
Eco32I GATATC 1 cut(s) 549
Eco47I GGWCC 2 cut(s) 82, 216
Eco88I CYCGRG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 628
EcoO109I RGGNCCY 4 cut(s) 216, 250, 277, 278
EcoO65I GGTNACC 1 cut(s) 628
EcoRV GATATC 1 cut(s) 549
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 3 cut(s) 281, 291, 775
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 421
FaeI CATG 8 cut(s) 133, 157, 169, 175, 313, 563, 590, 794
FalI AAGNNNNNCTT 2 cut(s) 827, 859
FatI CATG 8 cut(s) 129, 153, 165, 171, 309, 559, 586, 790
FauI CCCGC 3 cut(s) 289, 377, 674
FauNDI CATATG 2 cut(s) 201, 823
FblI GTMKAC 3 cut(s) 183, 342, 354
FokI GGATG 3 cut(s) 578, 755, 780
FriOI GRGCYC 3 cut(s) 281, 291, 775
FspBI CTAG 1 cut(s) 459
GlaI GCGC 2 cut(s) 322, 489
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 324
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 323, 490
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 8 cut(s) 133, 157, 169, 175, 313, 563, 590, 794
Hin6I GCGC 2 cut(s) 321, 488
HinP1I GCGC 2 cut(s) 321, 488
HincII GTYRAC 2 cut(s) 184, 819
HindII GTYRAC 2 cut(s) 184, 819
HinfI GANTC 3 cut(s) 49, 240, 388
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 5 cut(s) 184, 343, 355, 495, 819
Hpy188I TCNGA 2 cut(s) 239, 777
Hpy188III TCNNGA 2 cut(s) 130, 420
Hpy8I GTNNAC 5 cut(s) 184, 343, 355, 495, 819
Hpy99I CGWCG 2 cut(s) 110, 185
HpyAV CCTTC 2 cut(s) 526, 850
HpyCH4III ACNGT 5 cut(s) 190, 475, 666, 875, 883
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 3 cut(s) 205, 505, 605
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 329, 410, 455, 602, 800
HpyF3I CTNAG 2 cut(s) 622, 734
HpySE526I ACGT 1 cut(s) 515
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 8 cut(s) 133, 157, 169, 175, 313, 563, 590, 794
HspAI GCGC 2 cut(s) 321, 488
KasI GGCGCC 1 cut(s) 320
Kpn2I TCCGGA 1 cut(s) 419
KroI GCCGGC 3 cut(s) 137, 149, 323
KroNI GCCGGC 3 cut(s) 139, 151, 325
KspI CCGCGG 1 cut(s) 298
Kzo9I GATC 2 cut(s) 132, 270
LmnI GCTCC 3 cut(s) 263, 556, 778
Lsp1109I GCAGC 7 cut(s) 67, 70, 79, 589, 617, 787, 790
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 4 cut(s) 628, 686, 869, 883
MalI GATC 2 cut(s) 134, 272
MboI GATC 2 cut(s) 132, 270
MboII GAAGA 5 cut(s) 280, 446, 541, 835, 847
MhlI GDGCHC 4 cut(s) 165, 281, 291, 775
MlsI TGGCCA 2 cut(s) 5, 170
MluCI AATT 1 cut(s) 659
MluNI TGGCCA 2 cut(s) 5, 170
Mly113I GGCGCC 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 217
Mox20I TGGCCA 2 cut(s) 5, 170
MroI TCCGGA 1 cut(s) 419
MroNI GCCGGC 3 cut(s) 137, 149, 323
MroXI GAANNNNTTC 1 cut(s) 839
MscI TGGCCA 2 cut(s) 5, 170
MseI TTAA 2 cut(s) 228, 696
MslI CAYNNNNRTG 3 cut(s) 170, 500, 564
Msp20I TGGCCA 2 cut(s) 5, 170
MspA1I CMGCKG 4 cut(s) 92, 297, 596, 608
MspR9I CCNGG 3 cut(s) 35, 286, 329
Mva1269I GAATGC 2 cut(s) 490, 786
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 6 cut(s) 11, 329, 410, 455, 602, 800
NaeI GCCGGC 3 cut(s) 139, 151, 325
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 3 cut(s) 35, 286, 329
NcoI CCATGG 1 cut(s) 309
NdeI CATATG 2 cut(s) 201, 823
NdeII GATC 2 cut(s) 132, 270
NgoMIV GCCGGC 3 cut(s) 137, 149, 323
NlaIII CATG 8 cut(s) 133, 157, 169, 175, 313, 563, 590, 794
NlaIV GGNNCC 6 cut(s) 217, 259, 279, 280, 322, 774
NmeAIII GCCGAG 2 cut(s) 234, 297
NmuCI GTSAC 2 cut(s) 628, 686
NspI RCATGY 1 cut(s) 563
NspV TTCGAA 2 cut(s) 724, 833
OliI CACNNNNGTG 1 cut(s) 500
PaeI GCATGC 1 cut(s) 563
PagI TCATGA 1 cut(s) 129
PctI GAATGC 2 cut(s) 490, 786
PdiI GCCGGC 3 cut(s) 139, 151, 325
PdmI GAANNNNTTC 1 cut(s) 839
PfeI GAWTC 3 cut(s) 49, 240, 388
PflFI GACNNNGTC 1 cut(s) 188
PluTI GGCGCC 1 cut(s) 324
Ppu21I YACGTR 1 cut(s) 516
PpuMI RGGWCCY 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 216
PspEI GGTNACC 1 cut(s) 628
PspN4I GGNNCC 6 cut(s) 217, 259, 279, 280, 322, 774
PspOMI GGGCCC 1 cut(s) 277
PspPI GGNCC 9 cut(s) 74, 82, 216, 250, 277, 278, 313, 326, 331
PspPPI RGGWCCY 1 cut(s) 216
PstI CTGCAG 1 cut(s) 607
PsyI GACNNNGTC 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 608
RseI CAYNNNNRTG 3 cut(s) 170, 500, 564
SacII CCGCGG 1 cut(s) 298
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 228, 696
Sau3AI GATC 2 cut(s) 132, 270
Sau96I GGNCC 9 cut(s) 74, 82, 216, 250, 277, 278, 313, 326, 331
ScrFI CCNGG 3 cut(s) 35, 286, 329
SduI GDGCHC 4 cut(s) 165, 281, 291, 775
SetI ASST 6 cut(s) 87, 211, 518, 610, 842, 890
SfcI CTRYAG 1 cut(s) 603
SfoI GGCGCC 1 cut(s) 322
Sfr303I CCGCGG 1 cut(s) 298
SfuI TTCGAA 2 cut(s) 724, 833
SgrBI CCGCGG 1 cut(s) 298
SinI GGWCC 2 cut(s) 82, 216
SmiMI CAYNNNNRTG 3 cut(s) 170, 500, 564
SphI GCATGC 1 cut(s) 563
Sse9I AATT 1 cut(s) 659
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 3 cut(s) 33, 284, 327
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 5 cut(s) 190, 475, 666, 875, 883
TaiI ACGT 1 cut(s) 518
TaqI TCGA 6 cut(s) 159, 183, 273, 707, 724, 833
TaqII GACCGA 2 cut(s) 223, 340
TasI AATT 1 cut(s) 659
TauI GCSGC 5 cut(s) 92, 300, 308, 407, 640
TfiI GAWTC 3 cut(s) 49, 240, 388
Tru1I TTAA 2 cut(s) 228, 696
Tru9I TTAA 2 cut(s) 228, 696
TscAI CASTG 4 cut(s) 630, 671, 880, 886
TseFI GTSAC 2 cut(s) 628, 686
TseI GCWGC 7 cut(s) 55, 58, 92, 602, 605, 800, 803
Tsp45I GTSAC 2 cut(s) 628, 686
TspDTI ATGAA 4 cut(s) 118, 281, 497, 575
TspRI CASTG 4 cut(s) 630, 671, 880, 886
Tth111I GACNNNGTC 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 82, 216
XceI RCATGY 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 854
XmiI GTMKAC 3 cut(s) 183, 342, 354
XmnI GAANNNNTTC 1 cut(s) 839
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.