MD04G1164600.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
25519055 .. 25521238
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1164600.v1.1.491

Sequence Viewer

Length: 981 bp
ATGGCGATTGACGCCTCCCCTGCATTCCAAACCGTCACTCAACCCCACGACTTCCGGCCAGAAATATCAGCATCCCCCTCCTCCGCCCATGACGGCCTAGAGTTCTGGCAGTTCATGATTGCCGGCTCCATAGCGGGCCTAGTTGAGCACATGGCTATGTTCCCAGTTGACACGCTCAAAACCCGCATGCAGATTTTTGGCGGGTCCTGTTCCGTTCAACCTATTGGCGTTAGACGGGCCCTTGGCTCGATTCTGAAGCTCGAAGGCCCCGCAGGGCTCTACCGCGGCATCGGCGCAATGGGGCTCGGAGCAGGACCTGCCCATGCAGTTTATTTCTCAGTGTACGAGATATTCAAGGAGTATTTCTCACGTGGGAATCCGAACAGCCCAGTGGCACACGCGGTTTCCGGGGTGTTTGCGACCGTTGCAAGCGACGCGGTGATCACACCGATGGACGTGGTGAAGCAGCGGCTGCAGCTGCAGAGCAGTCCGTACAAGGGAGTTGCGGATTGTGTGAGGAGGGTGTTGGTGGAAGAAGGGGTTGGAGCTTTTTACAAGTCGTACAGGACGACTGTTGTGATGAATGCCCCGTTTACTGCCGTCCATTTCGCTACGTATGAGGCAGCGAAGCGAGGGCTGATGGAGGTGTCGCCGGAGAGCGCGACTGACGAGAGGCTGGTGGTTCATGCCACTGCAGGTGCGGCTGCTGGGGCTTTGGCGGCGGCTGTGACCACCCCGCTTGATGTTGTAAAAACTCAATTGCAGTGTCAGGGGGTTTGCGGGTGCGATAGATTTTCGAGTAACTCGATAGGGGATGTTATTCGAAGCCTGGTGATGAAGGATGGGTACCGCAGTCTTATGCGAGGTTGGATTCCGAGGATGCTCTTCCACGCCCCGGCTGCAGCAATTTGCTGGTCCACTTATGAAGCATCAAAAACTTTCTTTCAAGAACTCAATGGCAGCGACAGTTCCAGGACTTGA

Protein Analysis

327

Amino Acids

34.93

Weight (kDa)

7.66

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 33 - 124 7.9e-22 Mitochondrial carrier protein
Mito_carr PF00153 128 - 215 1.6e-23 Mitochondrial carrier protein
Mito_carr PF00153 225 - 317 2.5e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 686
Acc36I ACCTGC 2 cut(s) 325, 686
Acc65I GGTACC 1 cut(s) 846
AccB1I GGYRCC 1 cut(s) 846
AccII CGCG 4 cut(s) 285, 401, 437, 662
AcoI YGGCCR 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 275
AcvI CACGTG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 4 cut(s) 344, 494, 563, 848
AfiI CCNNNNNNNGG 2 cut(s) 497, 895
AgsI TTSAA 3 cut(s) 218, 355, 947
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 2 cut(s) 828, 971
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 3 cut(s) 259, 478, 548
AluI AGCT 3 cut(s) 259, 478, 548
Alw21I GWGCWC 1 cut(s) 150
AlwNI CAGNNNCTG 2 cut(s) 317, 472
AoxI GGCC 5 cut(s) 56, 94, 136, 237, 265
ApaI GGGCCC 1 cut(s) 241
ApeKI GCWGC 9 cut(s) 466, 472, 475, 478, 623, 704, 899, 902, 960
Asp718I GGTACC 1 cut(s) 846
AspLEI GCGC 2 cut(s) 296, 662
AspS9I GGNCC 7 cut(s) 136, 204, 237, 238, 266, 314, 915
AsuC2I CCSGG 2 cut(s) 409, 896
AsuHPI GGTGA 3 cut(s) 451, 472, 844
AsuII TTCGAA 1 cut(s) 823
AvaII GGWCC 3 cut(s) 204, 314, 915
BaeGI GKGCMC 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 838, 871
BanI GGYRCC 1 cut(s) 846
BanII GRGCYC 3 cut(s) 241, 279, 306
BarI GAAGNNNNNNTAC 2 cut(s) 830, 862
BbrPI CACGTG 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 9 cut(s) 459, 465, 478, 487, 635, 691, 886, 914, 972
BccI CCATC 3 cut(s) 445, 634, 836
BceAI ACGGC 2 cut(s) 109, 584
BciT130I CCWGG 2 cut(s) 830, 973
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 2 cut(s) 409, 896
BfaI CTAG 2 cut(s) 98, 140
BfmI CTRYAG 4 cut(s) 473, 479, 693, 900
BfuAI ACCTGC 2 cut(s) 325, 686
Bme1390I CCNGG 4 cut(s) 409, 830, 896, 973
Bme18I GGWCC 3 cut(s) 204, 314, 915
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 7 cut(s) 136, 204, 237, 238, 266, 314, 915
BmiI GGNNCC 5 cut(s) 127, 205, 239, 268, 848
BmrFI CCNGG 4 cut(s) 409, 830, 896, 973
BmrI ACTGGG 2 cut(s) 158, 383
BmsI GCATC 4 cut(s) 80, 297, 870, 938
BmuI ACTGGG 2 cut(s) 158, 383
BplI GAGNNNNNCTC 2 cut(s) 350, 382
Bpu14I TTCGAA 1 cut(s) 823
BpuMI CCSGG 2 cut(s) 409, 896
BsaAI YACGTR 2 cut(s) 371, 615
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 5 cut(s) 241, 283, 408, 875, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 895
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 164, 389
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 2 cut(s) 830, 973
BseDI CCNNGG 5 cut(s) 241, 283, 408, 875, 894
BseGI GGATG 4 cut(s) 71, 820, 847, 885
BseLI CCNNNNNNNGG 2 cut(s) 497, 895
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 164, 389
BseRI GAGGAG 2 cut(s) 70, 532
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 9 cut(s) 459, 465, 478, 487, 635, 691, 886, 914, 972
BseYI CCCAGC 1 cut(s) 707
Bsh1236I CGCG 4 cut(s) 285, 401, 437, 662
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 5 cut(s) 58, 96, 138, 239, 267
BshNI GGYRCC 1 cut(s) 846
BsiEI CGRYCG 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 5 cut(s) 55, 123, 408, 653, 896
BslI CCNNNNNNNGG 2 cut(s) 497, 895
BsmI GAATGC 2 cut(s) 23, 589
BsnI GGCC 5 cut(s) 58, 96, 138, 239, 267
Bsp119I TTCGAA 1 cut(s) 823
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 4 cut(s) 150, 241, 279, 306
Bsp143I GATC 1 cut(s) 441
BspANI GGCC 5 cut(s) 58, 96, 138, 239, 267
BspCNI CTCAG 1 cut(s) 350
BspFNI CGCG 4 cut(s) 285, 401, 437, 662
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 5 cut(s) 127, 205, 239, 268, 848
BspMAI CTGCAG 4 cut(s) 477, 483, 697, 904
BspMI ACCTGC 2 cut(s) 325, 686
BspQI GCTCTTC 1 cut(s) 890
BspT104I TTCGAA 1 cut(s) 823
BspT107I GGYRCC 1 cut(s) 846
BsrDI GCAATG 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 164, 389
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 5 cut(s) 241, 283, 408, 875, 894
BssMI GATC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 2 cut(s) 830, 973
Bst4CI ACNGT 4 cut(s) 34, 424, 574, 968
Bst6I CTCTTC 1 cut(s) 890
BstACI GRCGYC 1 cut(s) 12
BstAPI GCANNNNNTGC 2 cut(s) 317, 472
BstBAI YACGTR 2 cut(s) 371, 615
BstBI TTCGAA 1 cut(s) 823
BstC8I GCNNGC 4 cut(s) 124, 136, 188, 430
BstDEI CTNAG 1 cut(s) 337
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 4 cut(s) 71, 820, 847, 885
BstFNI CGCG 4 cut(s) 285, 401, 437, 662
BstHHI GCGC 2 cut(s) 296, 662
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstMCI CGRYCG 1 cut(s) 423
BstNI CCWGG 2 cut(s) 830, 973
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 4 cut(s) 407, 828, 894, 971
BstSFI CTRYAG 4 cut(s) 473, 479, 693, 900
BstSLI GKGCMC 1 cut(s) 241
BstSNI TACGTA 1 cut(s) 615
BstUI CGCG 4 cut(s) 285, 401, 437, 662
BstV1I GCAGC 9 cut(s) 459, 465, 478, 487, 635, 691, 886, 914, 972
BsuRI GGCC 5 cut(s) 58, 96, 138, 239, 267
BtgI CCRYGG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 4 cut(s) 71, 820, 847, 885
BtsI GCAGTG 2 cut(s) 690, 770
BtsIMutI CAGTG 4 cut(s) 345, 396, 690, 770
BveI ACCTGC 2 cut(s) 325, 686
Cac8I GCNNGC 4 cut(s) 124, 136, 188, 430
CaiI CAGNNNCTG 2 cut(s) 317, 472
CciI TCATGA 1 cut(s) 114
CfoI GCGC 2 cut(s) 296, 662
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 7 cut(s) 136, 204, 237, 238, 266, 314, 915
Cfr42I CCGCGG 1 cut(s) 286
CseI GACGC 2 cut(s) 20, 443
Csp6I GTAC 4 cut(s) 343, 493, 562, 847
CspCI CAANNNNNGTGG 2 cut(s) 721, 756
CviAII CATG 6 cut(s) 89, 115, 151, 187, 323, 686
CviQI GTAC 4 cut(s) 343, 493, 562, 847
DdeI CTNAG 1 cut(s) 337
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
EciI GGCGGA 1 cut(s) 73
Eco105I TACGTA 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 3 cut(s) 241, 279, 306
Eco47I GGWCC 3 cut(s) 204, 314, 915
Eco57I CTGAAG 1 cut(s) 275
Eco72I CACGTG 1 cut(s) 371
EcoO109I RGGNCCY 4 cut(s) 204, 238, 266, 314
EcoRII CCWGG 2 cut(s) 828, 971
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 3 cut(s) 241, 279, 306
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 6 cut(s) 92, 118, 154, 190, 326, 689
FatI CATG 6 cut(s) 88, 114, 150, 186, 322, 685
FauI CCCGC 6 cut(s) 127, 191, 194, 277, 744, 773
FbaI TGATCA 1 cut(s) 441
FokI GGATG 4 cut(s) 58, 827, 854, 892
FriOI GRGCYC 3 cut(s) 241, 279, 306
FspBI CTAG 2 cut(s) 98, 140
GlaI GCGC 2 cut(s) 295, 661
GsaI CCCAGC 1 cut(s) 711
HaeIII GGCC 5 cut(s) 58, 96, 138, 239, 267
HapII CCGG 5 cut(s) 55, 123, 408, 653, 896
HgaI GACGC 2 cut(s) 20, 443
HhaI GCGC 2 cut(s) 296, 662
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 6 cut(s) 92, 118, 154, 190, 326, 689
Hin6I GCGC 2 cut(s) 294, 660
HinP1I GCGC 2 cut(s) 294, 660
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 3 cut(s) 250, 376, 871
HpaII CCGG 5 cut(s) 55, 123, 408, 653, 896
HphI GGTGA 3 cut(s) 451, 472, 844
Hpy166II GTNNAC 4 cut(s) 169, 343, 594, 918
Hpy188I TCNGA 4 cut(s) 255, 308, 381, 876
Hpy188III TCNNGA 2 cut(s) 115, 947
Hpy8I GTNNAC 4 cut(s) 169, 343, 594, 918
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 257, 530, 832
HpyCH4III ACNGT 4 cut(s) 34, 424, 574, 968
HpyCH4IV ACGT 3 cut(s) 370, 456, 614
HpyCH4V TGCA 9 cut(s) 23, 190, 326, 428, 475, 481, 695, 763, 902
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 3 cut(s) 370, 456, 614
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 6 cut(s) 92, 118, 154, 190, 326, 689
HspAI GCGC 2 cut(s) 294, 660
KpnI GGTACC 1 cut(s) 850
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 441
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 1 cut(s) 441
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 3 cut(s) 131, 308, 545
Lsp1109I GCAGC 9 cut(s) 459, 465, 478, 487, 635, 691, 886, 914, 972
LweI GCATC 4 cut(s) 80, 297, 870, 938
MaeI CTAG 2 cut(s) 98, 140
MaeII ACGT 3 cut(s) 370, 456, 614
MaeIII GTNAC 3 cut(s) 34, 727, 800
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 2 cut(s) 545, 877
MfeI CAATTG 1 cut(s) 758
MhlI GDGCHC 4 cut(s) 150, 241, 279, 306
MluCI AATT 2 cut(s) 758, 906
MmeI TCCRAC 2 cut(s) 523, 848
MroNI GCCGGC 1 cut(s) 122
MslI CAYNNNNRTG 2 cut(s) 155, 449
MspA1I CMGCKG 3 cut(s) 285, 469, 478
MspI CCGG 5 cut(s) 55, 123, 408, 653, 896
MspR9I CCNGG 4 cut(s) 409, 830, 896, 973
MunI CAATTG 1 cut(s) 758
Mva1269I GAATGC 2 cut(s) 23, 589
MvaI CCWGG 2 cut(s) 830, 973
MvnI CGCG 4 cut(s) 285, 401, 437, 662
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 2 cut(s) 409, 896
NdeII GATC 1 cut(s) 441
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 6 cut(s) 92, 118, 154, 190, 326, 689
NlaIV GGNNCC 5 cut(s) 127, 205, 239, 268, 848
NmuCI GTSAC 2 cut(s) 34, 727
NspI RCATGY 1 cut(s) 190
NspV TTCGAA 1 cut(s) 823
PaeI GCATGC 1 cut(s) 190
PagI TCATGA 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 890
PcsI WCGNNNNNNNCGW 2 cut(s) 566, 803
PctI GAATGC 2 cut(s) 23, 589
PdiI GCCGGC 1 cut(s) 124
PfeI GAWTC 3 cut(s) 250, 376, 871
PfoI TCCNGGA 1 cut(s) 971
PmaCI CACGTG 1 cut(s) 371
PmlI CACGTG 1 cut(s) 371
Ppu21I YACGTR 2 cut(s) 371, 615
PpuMI RGGWCCY 2 cut(s) 204, 314
Psp5II RGGWCCY 2 cut(s) 204, 314
Psp6I CCWGG 2 cut(s) 828, 971
PspCI CACGTG 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 707
PspGI CCWGG 2 cut(s) 828, 971
PspN4I GGNNCC 5 cut(s) 127, 205, 239, 268, 848
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 7 cut(s) 136, 204, 237, 238, 266, 314, 915
PspPPI RGGWCCY 2 cut(s) 204, 314
PstI CTGCAG 4 cut(s) 477, 483, 697, 904
PstNI CAGNNNCTG 2 cut(s) 317, 472
PvuII CAGCTG 1 cut(s) 478
RsaI GTAC 4 cut(s) 344, 494, 563, 848
RsaNI GTAC 4 cut(s) 343, 493, 562, 847
RseI CAYNNNNRTG 2 cut(s) 155, 449
SacII CCGCGG 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 890
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 7 cut(s) 136, 204, 237, 238, 266, 314, 915
ScrFI CCNGG 4 cut(s) 409, 830, 896, 973
SduI GDGCHC 4 cut(s) 150, 241, 279, 306
SfaNI GCATC 4 cut(s) 80, 297, 870, 938
SfcI CTRYAG 4 cut(s) 473, 479, 693, 900
Sfr303I CCGCGG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 823
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 3 cut(s) 204, 314, 915
SmiMI CAYNNNNRTG 2 cut(s) 155, 449
SnaBI TACGTA 1 cut(s) 615
SphI GCATGC 1 cut(s) 190
Sse9I AATT 2 cut(s) 758, 906
SspMI CTAG 2 cut(s) 98, 140
StyD4I CCNGG 4 cut(s) 407, 828, 894, 971
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 4 cut(s) 34, 424, 574, 968
TaiI ACGT 3 cut(s) 373, 459, 617
TaqI TCGA 5 cut(s) 248, 261, 797, 806, 823
TasI AATT 2 cut(s) 758, 906
TauI GCSGC 5 cut(s) 288, 472, 704, 722, 725
TfiI GAWTC 3 cut(s) 250, 376, 871
TscAI CASTG 4 cut(s) 345, 396, 697, 770
TseFI GTSAC 2 cut(s) 34, 727
TseI GCWGC 9 cut(s) 466, 472, 475, 478, 623, 704, 899, 902, 960
Tsp45I GTSAC 2 cut(s) 34, 727
TspDTI ATGAA 5 cut(s) 103, 596, 674, 851, 939
TspGWI ACGGA 2 cut(s) 202, 480
TspRI CASTG 4 cut(s) 345, 396, 697, 770
VpaK11BI GGWCC 3 cut(s) 204, 314, 915
XceI RCATGY 1 cut(s) 190
XspI CTAG 2 cut(s) 98, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.