FvH4_6g10760

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
6456688 .. 6459250
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10760.t1

Sequence Viewer

Length: 963 bp
ATGTCTACCGATGCCTCCCCAACTTTCCGGACCTTCTCGCACTCCCAACAACCCGAACCTGTTATGTTAACCTCCACTCACGACGGCCTTGAGTTCTGGCAGTACATGATCGCCGGCTCCATTGCCGGTTCCGTCGAGCACATGGCCATGTTCCCCGTCGACACCCTCAAAACCCGCATGCAGATCTTCGGTGGATCCCTCTCCGTCAACCCCGTCGGAGTCCGGCAAGCCCTCGGCTCCATTCTGAAGCTAGAAGGCCCGGCCGGCCTCTATCGCGGCATCGGTGCAATGGGACTCGGCGCCGGCCCGGCCCATGCAGTCTATTTCTCCGTCTACGAGTTATGCAAAGAGTACTTCACACGTGGCAACCCTAACAGCTCGGCTGCGTATGCTTTGTCCGGCGTGTGCGCGACTGTTATGAGCGACGCGGTGATCACGCCGATGGATATGGTGAAGCAGAGGCTGCAGTTGGAGAGCAGTCCGTACAAGGGCGTTGGGGACTGTGTGAGGAGGGTTTTGGTGGAGGAAGGGGTGGGGGCGTTTTACAAGTCGTATAAGACCACGGTGGTGATGAATGCGCCGTTCACGGCGGTTCATTTTGCCACGTATGAGGCGGCAAAGAGGGGGTTGAGTGAGGTGGCGCCGGAGAGTGCGAGTGATGAGAGGTTGGTGGTTCATGCGACGGCTGGTGCGGTGGCCGGGGCTTTGGCTGCGGCTGTGACTACTCCGCTTGATGTTGTCAAAACCCAACTGCAGTGTCAGGGGGTTTGTGGATGTGATAGATTTTCGAGTAGCTCGATAGGAGATGTTATTCGAAGCGTCGTGAATAAAGACGGATACAGAGGGCTTATGAGAGGTTGGATTCCCAGGATGCTCTTCCATGCCCCTGCGGCTGCAATTTGCTGGTCTACTTATGAAGCATCAAAAACGTTCTTTCAACAACTCAATGACAAGGATAAGTAA

Protein Analysis

321

Amino Acids

34.34

Weight (kDa)

7.61

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 30 - 121 3e-23 Mitochondrial carrier protein
Mito_carr PF00153 125 - 211 1.1e-21 Mitochondrial carrier protein
Mito_carr PF00153 222 - 314 2.2e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 299, 640
AccI GTMKAC 4 cut(s) 5, 159, 333, 908
AccII CGCG 3 cut(s) 276, 410, 428
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 9 cut(s) 175, 276, 428, 590, 614, 692, 713, 728, 890
AclI AACGTT 1 cut(s) 929
AclWI GGATC 2 cut(s) 189, 202
AcoI YGGCCR 3 cut(s) 144, 261, 696
AcuI CTGAAG 1 cut(s) 266
AcvI CACGTG 1 cut(s) 362
AcyI GRCGYC 2 cut(s) 300, 641
AfaI GTAC 3 cut(s) 104, 353, 485
AfiI CCNNNNNNNGG 1 cut(s) 488
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 1 cut(s) 938
AjnI CCWGG 1 cut(s) 866
AleI CACNNNNGTG 1 cut(s) 566
AluBI AGCT 3 cut(s) 250, 378, 795
AluI AGCT 3 cut(s) 250, 378, 795
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 2 cut(s) 189, 202
AlwNI CAGNNNCTG 1 cut(s) 463
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 8 cut(s) 85, 144, 256, 261, 265, 304, 309, 696
ApeKI GCWGC 4 cut(s) 383, 463, 710, 893
AspLEI GCGC 4 cut(s) 302, 410, 580, 643
AspS9I GGNCC 4 cut(s) 30, 257, 305, 310
AsuC2I CCSGG 3 cut(s) 260, 308, 700
AsuHPI GGTGA 3 cut(s) 442, 463, 580
AsuII TTCGAA 1 cut(s) 814
AvaII GGWCC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 146
BamHI GGATCC 1 cut(s) 194
BanI GGYRCC 2 cut(s) 299, 640
BbrPI CACGTG 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 4 cut(s) 370, 450, 697, 880
BccI CCATC 1 cut(s) 436
BceAI ACGGC 4 cut(s) 100, 565, 603, 699
BciT130I CCWGG 1 cut(s) 868
BciVI GTATCC 1 cut(s) 830
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 3 cut(s) 260, 308, 700
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 2 cut(s) 464, 752
BfoI RGCGCY 2 cut(s) 303, 644
BfuI GTATCC 1 cut(s) 830
BglI GCCNNNNNGGC 3 cut(s) 264, 308, 890
BglII AGATCT 1 cut(s) 183
BisI GCNGC 8 cut(s) 277, 384, 464, 615, 711, 714, 891, 894
BlsI GCNGC 8 cut(s) 278, 385, 465, 616, 712, 715, 892, 895
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 4 cut(s) 260, 308, 700, 868
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 4 cut(s) 30, 257, 305, 310
BmiI GGNNCC 6 cut(s) 118, 130, 196, 238, 301, 642
BmrFI CCNGG 4 cut(s) 260, 308, 700, 868
BmsI GCATC 3 cut(s) 288, 861, 929
Bpu14I TTCGAA 1 cut(s) 814
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 3 cut(s) 260, 308, 700
BsaAI YACGTR 2 cut(s) 362, 606
BsaHI GRCGYC 2 cut(s) 300, 641
BsaJI CCNNGG 4 cut(s) 232, 561, 699, 866
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse118I RCCGGY 4 cut(s) 113, 125, 263, 302
Bse3DI GCAATG 2 cut(s) 120, 294
BseAI TCCGGA 1 cut(s) 27
BseBI CCWGG 1 cut(s) 868
BseDI CCNNGG 4 cut(s) 232, 561, 699, 866
BseGI GGATG 2 cut(s) 779, 876
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 2 cut(s) 120, 294
BseRI GAGGAG 1 cut(s) 523
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 4 cut(s) 370, 450, 697, 880
Bsh1236I CGCG 3 cut(s) 276, 410, 428
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 8 cut(s) 87, 146, 258, 263, 267, 306, 311, 698
BshNI GGYRCC 2 cut(s) 299, 640
BsiEI CGRYCG 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 141
BslFI GGGAC 2 cut(s) 306, 512
BslI CCNNNNNNNGG 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 306, 512
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 8 cut(s) 87, 146, 258, 263, 267, 306, 311, 698
Bsp119I TTCGAA 1 cut(s) 814
Bsp1286I GDGCHC 1 cut(s) 141
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 4 cut(s) 108, 183, 194, 432
BspACI CCGC 9 cut(s) 175, 276, 428, 590, 614, 692, 713, 728, 890
BspANI GGCC 8 cut(s) 87, 146, 258, 263, 267, 306, 311, 698
BspEI TCCGGA 1 cut(s) 27
BspFNI CGCG 3 cut(s) 276, 410, 428
BspLI GGNNCC 6 cut(s) 118, 130, 196, 238, 301, 642
BspMAI CTGCAG 2 cut(s) 468, 756
BspPI GGATC 2 cut(s) 189, 202
BspQI GCTCTTC 1 cut(s) 881
BspT104I TTCGAA 1 cut(s) 814
BspT107I GGYRCC 2 cut(s) 299, 640
BsrDI GCAATG 2 cut(s) 120, 294
BsrFI RCCGGY 4 cut(s) 113, 125, 263, 302
BssAI RCCGGY 4 cut(s) 113, 125, 263, 302
BssECI CCNNGG 4 cut(s) 232, 561, 699, 866
BssMI GATC 4 cut(s) 108, 183, 194, 432
BssNI GRCGYC 2 cut(s) 300, 641
Bst2UI CCWGG 1 cut(s) 868
Bst4CI ACNGT 3 cut(s) 415, 503, 565
Bst6I CTCTTC 1 cut(s) 881
BstACI GRCGYC 2 cut(s) 300, 641
BstAPI GCANNNNNTGC 1 cut(s) 463
BstBAI YACGTR 2 cut(s) 362, 606
BstBI TTCGAA 1 cut(s) 814
BstC8I GCNNGC 5 cut(s) 115, 179, 228, 265, 304
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 2 cut(s) 779, 876
BstFNI CGCG 3 cut(s) 276, 410, 428
BstH2I RGCGCY 2 cut(s) 303, 644
BstHHI GCGC 4 cut(s) 302, 410, 580, 643
BstKTI GATC 4 cut(s) 111, 186, 197, 435
BstMBI GATC 4 cut(s) 108, 183, 194, 432
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 7 cut(s) 264, 273, 308, 389, 463, 710, 890
BstNI CCWGG 1 cut(s) 868
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 4 cut(s) 258, 306, 698, 866
BstSFI CTRYAG 2 cut(s) 464, 752
BstUI CGCG 3 cut(s) 276, 410, 428
BstV1I GCAGC 4 cut(s) 370, 450, 697, 880
BstX2I RGATCY 2 cut(s) 183, 194
BstYI RGATCY 2 cut(s) 183, 194
BstZI CGGCCG 1 cut(s) 261
BsuI GTATCC 1 cut(s) 830
BsuRI GGCC 8 cut(s) 87, 146, 258, 263, 267, 306, 311, 698
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 2 cut(s) 779, 876
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 1 cut(s) 761
Cac8I GCNNGC 5 cut(s) 115, 179, 228, 265, 304
CaiI CAGNNNCTG 1 cut(s) 463
CfoI GCGC 4 cut(s) 302, 410, 580, 643
Cfr10I RCCGGY 4 cut(s) 113, 125, 263, 302
Cfr13I GGNCC 4 cut(s) 30, 257, 305, 310
CseI GACGC 2 cut(s) 434, 808
Csp6I GTAC 3 cut(s) 103, 352, 484
CviAII CATG 7 cut(s) 106, 142, 148, 178, 314, 677, 881
CviQI GTAC 3 cut(s) 103, 352, 484
DinI GGCGCC 2 cut(s) 301, 642
DpnI GATC 4 cut(s) 110, 185, 196, 434
DpnII GATC 4 cut(s) 108, 183, 194, 432
EaeI YGGCCR 3 cut(s) 144, 261, 696
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 881
EarI CTCTTC 1 cut(s) 881
EclXI CGGCCG 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 30
Eco52I CGGCCG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 266
Eco72I CACGTG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 866
EgeI GGCGCC 2 cut(s) 301, 642
EheI GGCGCC 2 cut(s) 301, 642
FaeI CATG 7 cut(s) 109, 145, 151, 181, 317, 680, 884
FaqI GGGAC 2 cut(s) 306, 512
FatI CATG 7 cut(s) 105, 141, 147, 177, 313, 676, 880
FauI CCCGC 1 cut(s) 182
FbaI TGATCA 1 cut(s) 432
FblI GTMKAC 4 cut(s) 5, 159, 333, 908
Fnu4HI GCNGC 8 cut(s) 277, 384, 464, 615, 711, 714, 891, 894
FokI GGATG 2 cut(s) 786, 883
FseI GGCCGGCC 1 cut(s) 267
Fsp4HI GCNGC 8 cut(s) 277, 384, 464, 615, 711, 714, 891, 894
FspBI CTAG 1 cut(s) 251
GlaI GCGC 4 cut(s) 301, 409, 579, 642
GluI GCNGC 8 cut(s) 277, 384, 464, 615, 711, 714, 891, 894
HaeII RGCGCY 2 cut(s) 303, 644
HaeIII GGCC 8 cut(s) 87, 146, 258, 263, 267, 306, 311, 698
HgaI GACGC 2 cut(s) 434, 808
HhaI GCGC 4 cut(s) 302, 410, 580, 643
Hin1I GRCGYC 2 cut(s) 300, 641
Hin1II CATG 7 cut(s) 109, 145, 151, 181, 317, 680, 884
Hin6I GCGC 4 cut(s) 300, 408, 578, 641
HinP1I GCGC 4 cut(s) 300, 408, 578, 641
HincII GTYRAC 3 cut(s) 69, 160, 208
HindII GTYRAC 3 cut(s) 69, 160, 208
HinfI GANTC 3 cut(s) 219, 294, 862
HpaI GTTAAC 1 cut(s) 69
HphI GGTGA 3 cut(s) 442, 463, 580
Hpy166II GTNNAC 7 cut(s) 6, 69, 160, 208, 334, 585, 909
Hpy188I TCNGA 2 cut(s) 218, 246
Hpy188III TCNNGA 3 cut(s) 28, 80, 823
Hpy8I GTNNAC 7 cut(s) 6, 69, 160, 208, 334, 585, 909
Hpy99I CGWCG 7 cut(s) 86, 137, 161, 218, 428, 685, 824
HpyAV CCTTC 3 cut(s) 43, 248, 521
HpyCH4III ACNGT 3 cut(s) 415, 503, 565
HpyCH4IV ACGT 3 cut(s) 361, 605, 929
HpyCH4V TGCA 7 cut(s) 181, 287, 317, 345, 466, 754, 896
HpyF10VI GCNNNNNNNGC 7 cut(s) 264, 273, 308, 389, 463, 710, 890
HpySE526I ACGT 3 cut(s) 361, 605, 929
Hsp92I GRCGYC 2 cut(s) 300, 641
Hsp92II CATG 7 cut(s) 109, 145, 151, 181, 317, 680, 884
HspAI GCGC 4 cut(s) 300, 408, 578, 641
KasI GGCGCC 2 cut(s) 299, 640
Kpn2I TCCGGA 1 cut(s) 27
KroI GCCGGC 3 cut(s) 113, 263, 302
KroNI GCCGGC 3 cut(s) 115, 265, 304
Ksp22I TGATCA 1 cut(s) 432
KspAI GTTAAC 1 cut(s) 69
Kzo9I GATC 4 cut(s) 108, 183, 194, 432
LguI GCTCTTC 1 cut(s) 881
LmnI GCTCC 2 cut(s) 122, 242
Lsp1109I GCAGC 4 cut(s) 370, 450, 697, 880
LweI GCATC 3 cut(s) 288, 861, 929
MaeI CTAG 1 cut(s) 251
MaeII ACGT 3 cut(s) 361, 605, 929
MaeIII GTNAC 1 cut(s) 718
MalI GATC 4 cut(s) 110, 185, 196, 434
MboI GATC 4 cut(s) 108, 183, 194, 432
MboII GAAGA 2 cut(s) 178, 868
MflI RGATCY 2 cut(s) 183, 194
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 1 cut(s) 897
MluNI TGGCCA 1 cut(s) 146
Mly113I GGCGCC 2 cut(s) 300, 641
MlyI GAGTC 2 cut(s) 228, 288
MmeI TCCRAC 3 cut(s) 196, 450, 839
Mox20I TGGCCA 1 cut(s) 146
MroI TCCGGA 1 cut(s) 27
MroNI GCCGGC 3 cut(s) 113, 263, 302
MscI TGGCCA 1 cut(s) 146
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 3 cut(s) 146, 440, 566
Msp20I TGGCCA 1 cut(s) 146
MspR9I CCNGG 4 cut(s) 260, 308, 700, 868
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 1 cut(s) 868
MvnI CGCG 3 cut(s) 276, 410, 428
MwoI GCNNNNNNNGC 7 cut(s) 264, 273, 308, 389, 463, 710, 890
NaeI GCCGGC 3 cut(s) 115, 265, 304
NarI GGCGCC 2 cut(s) 300, 641
NciI CCSGG 3 cut(s) 260, 308, 700
NdeII GATC 4 cut(s) 108, 183, 194, 432
NgoMIV GCCGGC 3 cut(s) 113, 263, 302
NlaIII CATG 7 cut(s) 109, 145, 151, 181, 317, 680, 884
NlaIV GGNNCC 6 cut(s) 118, 130, 196, 238, 301, 642
NmeAIII GCCGAG 3 cut(s) 213, 276, 359
NmuCI GTSAC 1 cut(s) 718
NspI RCATGY 1 cut(s) 181
NspV TTCGAA 1 cut(s) 814
OliI CACNNNNGTG 1 cut(s) 566
PaeI GCATGC 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 881
PcsI WCGNNNNNNNCGW 1 cut(s) 794
PctI GAATGC 1 cut(s) 580
PdiI GCCGGC 3 cut(s) 115, 265, 304
PfeI GAWTC 1 cut(s) 862
PkrI GCNGC 8 cut(s) 278, 385, 465, 616, 712, 715, 892, 895
PleI GAGTC 2 cut(s) 227, 288
PluTI GGCGCC 2 cut(s) 303, 644
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
PpsI GAGTC 2 cut(s) 227, 288
Ppu21I YACGTR 2 cut(s) 362, 606
Psp1406I AACGTT 1 cut(s) 929
Psp6I CCWGG 1 cut(s) 866
PspCI CACGTG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 866
PspN4I GGNNCC 6 cut(s) 118, 130, 196, 238, 301, 642
PspPI GGNCC 4 cut(s) 30, 257, 305, 310
PstI CTGCAG 2 cut(s) 468, 756
PstNI CAGNNNCTG 1 cut(s) 463
PsuI RGATCY 2 cut(s) 183, 194
RigI GGCCGGCC 1 cut(s) 267
RsaI GTAC 3 cut(s) 104, 353, 485
RsaNI GTAC 3 cut(s) 103, 352, 484
RseI CAYNNNNRTG 3 cut(s) 146, 440, 566
SalI GTCGAC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 881
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 8 cut(s) 277, 384, 464, 615, 711, 714, 891, 894
Sau3AI GATC 4 cut(s) 108, 183, 194, 432
Sau96I GGNCC 4 cut(s) 30, 257, 305, 310
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 2 cut(s) 228, 288
ScrFI CCNGG 4 cut(s) 260, 308, 700, 868
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 3 cut(s) 288, 861, 929
SfcI CTRYAG 2 cut(s) 464, 752
SfiI GGCCNNNNNGGCC 1 cut(s) 264
SfoI GGCGCC 2 cut(s) 301, 642
SfuI TTCGAA 1 cut(s) 814
SinI GGWCC 1 cut(s) 30
SmiMI CAYNNNNRTG 3 cut(s) 146, 440, 566
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SphI GCATGC 1 cut(s) 181
Sse9I AATT 1 cut(s) 897
SsiI CCGC 9 cut(s) 175, 276, 428, 590, 614, 692, 713, 728, 890
SspDI GGCGCC 2 cut(s) 299, 640
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 4 cut(s) 258, 306, 698, 866
TaaI ACNGT 3 cut(s) 415, 503, 565
TaiI ACGT 3 cut(s) 364, 608, 932
TaqI TCGA 5 cut(s) 135, 159, 788, 797, 814
TasI AATT 1 cut(s) 897
TatI WGTACW 2 cut(s) 102, 351
TauI GCSGC 4 cut(s) 279, 617, 716, 893
TfiI GAWTC 1 cut(s) 862
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 761
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 4 cut(s) 383, 463, 710, 893
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 4 cut(s) 584, 587, 665, 930
TspGWI ACGGA 5 cut(s) 121, 193, 319, 471, 849
TspRI CASTG 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 30
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 4 cut(s) 5, 159, 333, 908
XspI CTAG 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.