pycom04g14690

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
17513408 .. 17514869
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14690.1

Sequence Viewer

Length: 981 bp
ATGGCAACTGACGCCTCCCCTGCATTCCAAACCGTCACTCAACCCCACGACTTCCGGCCAGAAATATCAGCATCCCCCTCCTCCGCCCATGACGGCCTAGAGTTCTGGCAGTTCATGATTGCCGGCTCCATAGCGGGCCTAGTTGAGCACATGGCTATGTTCCCAGTTGACACGCTCAAAACCCGCATGCAGATTTTTGGCGAGTCCTGTTCCGTTCAACCTATTGGCGTTAGACAGGCCCTTGGCTCGATTCTGAAGCTCGAAGGCCCCGCAGGGCTCTACCGCGGCATCGGCGCAATGGGGCTGGGAGCAGGACCTGCCCATGCAGTTTATTTCTCAGTGTACGAGATATTCAAGGAGTATTTCTCACGTGGGAATCCTAACAGCCCGGCGGCGCACGCGGTTTCCGGGGTGTTCGCGACCGTTGCAAGCGACGCGGTGATCACACCTATGGACGTGGTGAAGCAGCGGCTGCAGCTGCAGAGCAGTCCGTACAAGGGAGTTGCGGATTGTGTGAGGAGGGTATTGGTGGAAGAAGGGGTTGGAGCTTTTTACAAGTCGTACAGGACGACTGTTGTGATGAATGCCCCGTTTACTGCCGTCCATTTCGCTACGTATGAGGCAGCGAAGCGAGGGCTGATGGAGGTGTCGCCGGAGAGCGCGAGTGACGAGAGGCTGGTGGTTCATGCCACTGCAGGTGCGGCTGCTGGGGCTTTGGCAGCGGCTGTGACCACCCCGCTTGATGTTGTAAAAACTCAATTGCAGTGCCAGGGGGTTTGCGGGTGCGATAGATTTTCGAGTAACTCGATAGGGGATGTTATTCGAAGCCTGGTGATGAAGGATGGATACCGCAGTCTTATGCGAGGTTGGATTCCGAGGATGCTCTTCCACGCCCCGGCTGCAGCAATTTGCTGGTCCACTTACGAAGCATCAAAAACTTTCTTTCAAGAACTCAATGGCAGCGACAGTTCCAGGAATTGA

Protein Analysis

327

Amino Acids

34.94

Weight (kDa)

6.71

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 33 - 124 4.1e-22 Mitochondrial carrier protein
Mito_carr PF00153 128 - 215 2e-23 Mitochondrial carrier protein
Mito_carr PF00153 225 - 317 2.2e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 686
Acc36I ACCTGC 2 cut(s) 325, 686
AccII CGCG 5 cut(s) 285, 401, 419, 437, 662
AcoI YGGCCR 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 275
AcvI CACGTG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 3 cut(s) 344, 494, 563
AfiI CCNNNNNNNGG 2 cut(s) 497, 895
AgsI TTSAA 3 cut(s) 218, 355, 947
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 3 cut(s) 768, 828, 971
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 3 cut(s) 259, 478, 548
AluI AGCT 3 cut(s) 259, 478, 548
Alw21I GWGCWC 1 cut(s) 150
AlwNI CAGNNNCTG 3 cut(s) 317, 472, 725
AoxI GGCC 5 cut(s) 56, 94, 136, 237, 265
AspLEI GCGC 3 cut(s) 296, 397, 662
AspS9I GGNCC 5 cut(s) 136, 238, 266, 314, 915
AsuC2I CCSGG 3 cut(s) 389, 409, 896
AsuHPI GGTGA 3 cut(s) 451, 472, 844
AsuII TTCGAA 1 cut(s) 823
AvaII GGWCC 2 cut(s) 314, 915
BaeI ACNNNNGTAYC 2 cut(s) 838, 871
BanII GRGCYC 1 cut(s) 279
BarI GAAGNNNNNNTAC 2 cut(s) 830, 862
BbrPI CACGTG 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 634, 836
BceAI ACGGC 2 cut(s) 109, 584
BciT130I CCWGG 3 cut(s) 770, 830, 973
BciVI GTATCC 1 cut(s) 839
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 3 cut(s) 389, 409, 896
BfaI CTAG 2 cut(s) 98, 140
BfmI CTRYAG 4 cut(s) 473, 479, 693, 900
BfuAI ACCTGC 2 cut(s) 325, 686
BfuI GTATCC 1 cut(s) 839
Bme1390I CCNGG 6 cut(s) 389, 409, 770, 830, 896, 973
Bme18I GGWCC 2 cut(s) 314, 915
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 5 cut(s) 136, 238, 266, 314, 915
BmiI GGNNCC 2 cut(s) 127, 268
BmrFI CCNGG 6 cut(s) 389, 409, 770, 830, 896, 973
BmrI ACTGGG 1 cut(s) 158
BmsI GCATC 4 cut(s) 80, 297, 870, 938
BmuI ACTGGG 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 350, 382
Bpu14I TTCGAA 1 cut(s) 823
BpuMI CCSGG 3 cut(s) 389, 409, 896
BsaAI YACGTR 2 cut(s) 371, 615
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 6 cut(s) 241, 283, 408, 769, 875, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 895
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 3 cut(s) 770, 830, 973
BseDI CCNNGG 6 cut(s) 241, 283, 408, 769, 875, 894
BseGI GGATG 4 cut(s) 71, 820, 847, 885
BseLI CCNNNNNNNGG 2 cut(s) 497, 895
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 70, 532
BseYI CCCAGC 2 cut(s) 304, 707
Bsh1236I CGCG 5 cut(s) 285, 401, 419, 437, 662
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 5 cut(s) 58, 96, 138, 239, 267
BsiEI CGRYCG 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 6 cut(s) 55, 123, 389, 408, 653, 896
BslI CCNNNNNNNGG 2 cut(s) 497, 895
BsmI GAATGC 2 cut(s) 23, 589
BsnI GGCC 5 cut(s) 58, 96, 138, 239, 267
Bsp119I TTCGAA 1 cut(s) 823
Bsp1286I GDGCHC 2 cut(s) 150, 279
Bsp143I GATC 1 cut(s) 441
Bsp68I TCGCGA 1 cut(s) 419
BspANI GGCC 5 cut(s) 58, 96, 138, 239, 267
BspCNI CTCAG 1 cut(s) 350
BspFNI CGCG 5 cut(s) 285, 401, 419, 437, 662
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 127, 268
BspMAI CTGCAG 4 cut(s) 477, 483, 697, 904
BspMI ACCTGC 2 cut(s) 325, 686
BspQI GCTCTTC 1 cut(s) 890
BspT104I TTCGAA 1 cut(s) 823
BsrDI GCAATG 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 6 cut(s) 241, 283, 408, 769, 875, 894
BssMI GATC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 3 cut(s) 770, 830, 973
Bst4CI ACNGT 4 cut(s) 34, 424, 574, 968
Bst6I CTCTTC 1 cut(s) 890
BstACI GRCGYC 1 cut(s) 12
BstAPI GCANNNNNTGC 2 cut(s) 317, 472
BstBAI YACGTR 2 cut(s) 371, 615
BstBI TTCGAA 1 cut(s) 823
BstC8I GCNNGC 5 cut(s) 124, 136, 188, 399, 430
BstDEI CTNAG 1 cut(s) 337
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 4 cut(s) 71, 820, 847, 885
BstFNI CGCG 5 cut(s) 285, 401, 419, 437, 662
BstHHI GCGC 3 cut(s) 296, 397, 662
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstMCI CGRYCG 1 cut(s) 423
BstNI CCWGG 3 cut(s) 770, 830, 973
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 6 cut(s) 387, 407, 768, 828, 894, 971
BstSFI CTRYAG 4 cut(s) 473, 479, 693, 900
BstSNI TACGTA 1 cut(s) 615
BstUI CGCG 5 cut(s) 285, 401, 419, 437, 662
BsuI GTATCC 1 cut(s) 839
BsuRI GGCC 5 cut(s) 58, 96, 138, 239, 267
BtgI CCRYGG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 4 cut(s) 71, 820, 847, 885
BtsI GCAGTG 2 cut(s) 690, 770
BtsIMutI CAGTG 3 cut(s) 345, 690, 770
BtuMI TCGCGA 1 cut(s) 419
BveI ACCTGC 2 cut(s) 325, 686
Cac8I GCNNGC 5 cut(s) 124, 136, 188, 399, 430
CaiI CAGNNNCTG 3 cut(s) 317, 472, 725
CciI TCATGA 1 cut(s) 114
CfoI GCGC 3 cut(s) 296, 397, 662
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 5 cut(s) 136, 238, 266, 314, 915
Cfr42I CCGCGG 1 cut(s) 286
CseI GACGC 2 cut(s) 20, 443
Csp6I GTAC 3 cut(s) 343, 493, 562
CspCI CAANNNNNGTGG 2 cut(s) 721, 756
CviAII CATG 6 cut(s) 89, 115, 151, 187, 323, 686
CviQI GTAC 3 cut(s) 343, 493, 562
DdeI CTNAG 1 cut(s) 337
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
EciI GGCGGA 1 cut(s) 73
Eco105I TACGTA 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 314, 915
Eco57I CTGAAG 1 cut(s) 275
Eco72I CACGTG 1 cut(s) 371
EcoO109I RGGNCCY 3 cut(s) 238, 266, 314
EcoRII CCWGG 3 cut(s) 768, 828, 971
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 6 cut(s) 92, 118, 154, 190, 326, 689
FatI CATG 6 cut(s) 88, 114, 150, 186, 322, 685
FauI CCCGC 5 cut(s) 127, 191, 277, 744, 773
FbaI TGATCA 1 cut(s) 441
FokI GGATG 4 cut(s) 58, 827, 854, 892
FriOI GRGCYC 1 cut(s) 279
FspBI CTAG 2 cut(s) 98, 140
GlaI GCGC 3 cut(s) 295, 396, 661
GsaI CCCAGC 2 cut(s) 308, 711
HaeIII GGCC 5 cut(s) 58, 96, 138, 239, 267
HapII CCGG 6 cut(s) 55, 123, 389, 408, 653, 896
HgaI GACGC 2 cut(s) 20, 443
HhaI GCGC 3 cut(s) 296, 397, 662
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 6 cut(s) 92, 118, 154, 190, 326, 689
Hin6I GCGC 3 cut(s) 294, 395, 660
HinP1I GCGC 3 cut(s) 294, 395, 660
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 4 cut(s) 203, 250, 376, 871
HpaII CCGG 6 cut(s) 55, 123, 389, 408, 653, 896
HphI GGTGA 3 cut(s) 451, 472, 844
Hpy166II GTNNAC 4 cut(s) 169, 343, 594, 918
Hpy188I TCNGA 2 cut(s) 255, 876
Hpy188III TCNNGA 3 cut(s) 115, 418, 947
Hpy8I GTNNAC 4 cut(s) 169, 343, 594, 918
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 257, 530, 832
HpyCH4III ACNGT 4 cut(s) 34, 424, 574, 968
HpyCH4IV ACGT 3 cut(s) 370, 456, 614
HpyCH4V TGCA 9 cut(s) 23, 190, 326, 428, 475, 481, 695, 763, 902
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 3 cut(s) 370, 456, 614
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 6 cut(s) 92, 118, 154, 190, 326, 689
HspAI GCGC 3 cut(s) 294, 395, 660
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 441
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 1 cut(s) 441
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 3 cut(s) 131, 308, 545
LweI GCATC 4 cut(s) 80, 297, 870, 938
MaeI CTAG 2 cut(s) 98, 140
MaeII ACGT 3 cut(s) 370, 456, 614
MaeIII GTNAC 4 cut(s) 34, 665, 727, 800
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 2 cut(s) 545, 877
MfeI CAATTG 1 cut(s) 758
MhlI GDGCHC 2 cut(s) 150, 279
MluCI AATT 3 cut(s) 758, 906, 976
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 523, 848
MroNI GCCGGC 1 cut(s) 122
MslI CAYNNNNRTG 2 cut(s) 155, 449
MspA1I CMGCKG 4 cut(s) 285, 469, 478, 722
MspI CCGG 6 cut(s) 55, 123, 389, 408, 653, 896
MspR9I CCNGG 6 cut(s) 389, 409, 770, 830, 896, 973
MunI CAATTG 1 cut(s) 758
Mva1269I GAATGC 2 cut(s) 23, 589
MvaI CCWGG 3 cut(s) 770, 830, 973
MvnI CGCG 5 cut(s) 285, 401, 419, 437, 662
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 3 cut(s) 389, 409, 896
NdeII GATC 1 cut(s) 441
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 6 cut(s) 92, 118, 154, 190, 326, 689
NlaIV GGNNCC 2 cut(s) 127, 268
NmuCI GTSAC 3 cut(s) 34, 665, 727
NruI TCGCGA 1 cut(s) 419
NspI RCATGY 1 cut(s) 190
NspV TTCGAA 1 cut(s) 823
PaeI GCATGC 1 cut(s) 190
PagI TCATGA 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 890
PcsI WCGNNNNNNNCGW 2 cut(s) 566, 803
PctI GAATGC 2 cut(s) 23, 589
PdiI GCCGGC 1 cut(s) 124
PfeI GAWTC 3 cut(s) 250, 376, 871
PfoI TCCNGGA 1 cut(s) 971
PleI GAGTC 1 cut(s) 211
PmaCI CACGTG 1 cut(s) 371
PmlI CACGTG 1 cut(s) 371
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 2 cut(s) 371, 615
PpuMI RGGWCCY 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 3 cut(s) 768, 828, 971
PspCI CACGTG 1 cut(s) 371
PspFI CCCAGC 2 cut(s) 304, 707
PspGI CCWGG 3 cut(s) 768, 828, 971
PspN4I GGNNCC 2 cut(s) 127, 268
PspPI GGNCC 5 cut(s) 136, 238, 266, 314, 915
PspPPI RGGWCCY 1 cut(s) 314
PstI CTGCAG 4 cut(s) 477, 483, 697, 904
PstNI CAGNNNCTG 3 cut(s) 317, 472, 725
PvuII CAGCTG 1 cut(s) 478
RruI TCGCGA 1 cut(s) 419
RsaI GTAC 3 cut(s) 344, 494, 563
RsaNI GTAC 3 cut(s) 343, 493, 562
RseI CAYNNNNRTG 2 cut(s) 155, 449
SacII CCGCGG 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 890
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 5 cut(s) 136, 238, 266, 314, 915
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 6 cut(s) 389, 409, 770, 830, 896, 973
SduI GDGCHC 2 cut(s) 150, 279
SfaNI GCATC 4 cut(s) 80, 297, 870, 938
SfcI CTRYAG 4 cut(s) 473, 479, 693, 900
Sfr303I CCGCGG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 823
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 2 cut(s) 314, 915
SmiMI CAYNNNNRTG 2 cut(s) 155, 449
SnaBI TACGTA 1 cut(s) 615
SphI GCATGC 1 cut(s) 190
Sse9I AATT 3 cut(s) 758, 906, 976
SspMI CTAG 2 cut(s) 98, 140
StyD4I CCNGG 6 cut(s) 387, 407, 768, 828, 894, 971
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 4 cut(s) 34, 424, 574, 968
TaiI ACGT 3 cut(s) 373, 459, 617
TaqI TCGA 5 cut(s) 248, 261, 797, 806, 823
TasI AATT 3 cut(s) 758, 906, 976
TauI GCSGC 5 cut(s) 288, 395, 472, 704, 725
TfiI GAWTC 3 cut(s) 250, 376, 871
TscAI CASTG 3 cut(s) 345, 697, 770
TseFI GTSAC 3 cut(s) 34, 665, 727
Tsp45I GTSAC 3 cut(s) 34, 665, 727
TspDTI ATGAA 4 cut(s) 103, 596, 674, 851
TspGWI ACGGA 2 cut(s) 202, 480
TspRI CASTG 3 cut(s) 345, 697, 770
VpaK11BI GGWCC 2 cut(s) 314, 915
XceI RCATGY 1 cut(s) 190
XspI CTAG 2 cut(s) 98, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.