Rroxscaffold_6G00417910

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
39483968 .. 39484609
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417910.1

Sequence Viewer

Length: 642 bp
ATGTCCACCGATGCCTCCCCCACTTTCCGGACCCTCTCGCACTCTCAAAAACTCGATTTCCAACCCGAACCCGTTATCTCTGCCTCCACCCACGACGGCCTTAAGTTCTGGCAGTACATGATCGCCGGTTCCATAGCCGGCTCCGTTGAGCACATGGCCATGTTCCCTGTTGACACTCTCAAAACCAGGATGCAGATCTTCGGTGGTTCCCTCTCCGTTAACCCCGTCGGAGTCCGGCAAGCCCTGGGCTCCATTCTCAAGCTCGAAGGCCCGGCCGGTCTTTACCGCGGAATTGGCGCCATGGGCCTCGGCGCCGGCCCGGCACACGCCGTCTACTTCTCCGTCTACGAGTTCTGCAAGGAGCACTTCACACGTGGCAACCCGAACAACTCGGCGGCGCACGCGGTGTCCGGCGTGTGCGCGACCGTTATGAGCGACGCGGTGATTACGCCGATGGATATGGTAAAGCAGAGGCTGCAGTTGGAGAGTAGTCCTTACAAGGGCGTTGGGGACTGTGTCAGGAGGGTTTTGGTGGAGGAAGGGGTGGGGGCGTTCTACAAGTCGTATAAGACCACGGTGGTGATGAATGCGCCGTTCACGGCGGTTCATTTCGCCACGTACGAGGCGGCAAAGAGGGGTTGA

Protein Analysis

213

Amino Acids

22.89

Weight (kDa)

8.75

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 34 - 125 1e-23 Mitochondrial carrier protein
Mito_carr PF00153 129 - 212 2.1e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 296, 311
AccI GTMKAC 2 cut(s) 333, 345
AccII CGCG 4 cut(s) 288, 404, 422, 440
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 7 cut(s) 286, 288, 395, 404, 440, 602, 626
AcoI YGGCCR 2 cut(s) 156, 273
AcvI CACGTG 1 cut(s) 374
AcyI GRCGYC 2 cut(s) 297, 312
AdeI CACNNNGTG 1 cut(s) 406
AfaI GTAC 2 cut(s) 116, 620
AfiI CCNNNNNNNGG 2 cut(s) 27, 500
AflII CTTAAG 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 371
AjnI CCWGG 2 cut(s) 185, 243
AleI CACNNNNGTG 1 cut(s) 578
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw21I GWGCWC 2 cut(s) 153, 366
AlwNI CAGNNNCTG 1 cut(s) 475
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 6 cut(s) 97, 156, 268, 273, 304, 316
ApeKI GCWGC 1 cut(s) 475
AspLEI GCGC 5 cut(s) 299, 314, 400, 422, 592
AspS9I GGNCC 4 cut(s) 30, 269, 304, 317
AsuC2I CCSGG 2 cut(s) 272, 320
AsuHPI GGTGA 2 cut(s) 454, 592
AvaII GGWCC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 2 cut(s) 296, 311
BanII GRGCYC 1 cut(s) 251
BbrPI CACGTG 1 cut(s) 374
Bbv12I GWGCWC 2 cut(s) 153, 366
BbvI GCAGC 1 cut(s) 462
BccI CCATC 1 cut(s) 448
BceAI ACGGC 4 cut(s) 112, 314, 577, 615
BciT130I CCWGG 2 cut(s) 187, 245
BcnI CCSGG 2 cut(s) 272, 320
BfmI CTRYAG 1 cut(s) 476
BfoI RGCGCY 2 cut(s) 300, 315
BfrI CTTAAG 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 320
BglII AGATCT 1 cut(s) 195
BisI GCNGC 3 cut(s) 396, 476, 627
BlsI GCNGC 3 cut(s) 397, 477, 628
Bme1390I CCNGG 4 cut(s) 187, 245, 272, 320
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 4 cut(s) 30, 269, 304, 317
BmiI GGNNCC 7 cut(s) 32, 130, 142, 208, 250, 298, 313
BmrFI CCNGG 4 cut(s) 187, 245, 272, 320
BmsI GCATC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 2 cut(s) 272, 320
BsaAI YACGTR 2 cut(s) 374, 618
BsaBI GATNNNNATC 1 cut(s) 194
BsaHI GRCGYC 2 cut(s) 297, 312
BsaJI CCNNGG 6 cut(s) 243, 244, 286, 300, 307, 573
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 500
Bse118I RCCGGY 4 cut(s) 125, 137, 275, 314
Bse8I GATNNNNATC 1 cut(s) 194
BseAI TCCGGA 1 cut(s) 27
BseBI CCWGG 2 cut(s) 187, 245
BseDI CCNNGG 6 cut(s) 243, 244, 286, 300, 307, 573
BseGI GGATG 1 cut(s) 195
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 2 cut(s) 27, 500
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 462
Bsh1236I CGCG 4 cut(s) 288, 404, 422, 440
Bsh1285I CGRYCG 2 cut(s) 276, 426
BshFI GGCC 6 cut(s) 99, 158, 270, 275, 306, 318
BshNI GGYRCC 2 cut(s) 296, 311
BsiEI CGRYCG 2 cut(s) 276, 426
BsiHKAI GWGCWC 2 cut(s) 153, 366
BsiSI CCGG 9 cut(s) 28, 126, 138, 235, 272, 276, 315, 320, 411
BsiWI CGTACG 1 cut(s) 618
BslFI GGGAC 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 27, 500
BsmFI GGGAC 1 cut(s) 524
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 6 cut(s) 99, 158, 270, 275, 306, 318
Bsp1286I GDGCHC 3 cut(s) 153, 251, 366
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 2 cut(s) 120, 195
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 7 cut(s) 286, 288, 395, 404, 440, 602, 626
BspANI GGCC 6 cut(s) 99, 158, 270, 275, 306, 318
BspEI TCCGGA 1 cut(s) 27
BspFNI CGCG 4 cut(s) 288, 404, 422, 440
BspLI GGNNCC 7 cut(s) 32, 130, 142, 208, 250, 298, 313
BspMAI CTGCAG 1 cut(s) 480
BspT107I GGYRCC 2 cut(s) 296, 311
BspTI CTTAAG 1 cut(s) 101
BsrFI RCCGGY 4 cut(s) 125, 137, 275, 314
BssAI RCCGGY 4 cut(s) 125, 137, 275, 314
BssECI CCNNGG 6 cut(s) 243, 244, 286, 300, 307, 573
BssMI GATC 2 cut(s) 120, 195
BssNI GRCGYC 2 cut(s) 297, 312
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 187, 245
Bst4CI ACNGT 3 cut(s) 427, 515, 577
BstACI GRCGYC 2 cut(s) 297, 312
BstAFI CTTAAG 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBAI YACGTR 2 cut(s) 374, 618
BstC8I GCNNGC 4 cut(s) 139, 240, 316, 402
BstDSI CCRYGG 3 cut(s) 286, 300, 573
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 4 cut(s) 288, 404, 422, 440
BstH2I RGCGCY 2 cut(s) 300, 315
BstHHI GCGC 5 cut(s) 299, 314, 400, 422, 592
BstKTI GATC 2 cut(s) 123, 198
BstMBI GATC 2 cut(s) 120, 195
BstMCI CGRYCG 2 cut(s) 276, 426
BstMWI GCNNNNNNNGC 5 cut(s) 294, 303, 320, 401, 475
BstNI CCWGG 2 cut(s) 187, 245
BstSCI CCNGG 4 cut(s) 185, 243, 270, 318
BstSFI CTRYAG 1 cut(s) 476
BstUI CGCG 4 cut(s) 288, 404, 422, 440
BstV1I GCAGC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BstZI CGGCCG 1 cut(s) 273
BsuRI GGCC 6 cut(s) 99, 158, 270, 275, 306, 318
BtgI CCRYGG 3 cut(s) 286, 300, 573
BtsCI GGATG 1 cut(s) 195
Cac8I GCNNGC 4 cut(s) 139, 240, 316, 402
CaiI CAGNNNCTG 1 cut(s) 475
CfoI GCGC 5 cut(s) 299, 314, 400, 422, 592
Cfr10I RCCGGY 4 cut(s) 125, 137, 275, 314
Cfr13I GGNCC 4 cut(s) 30, 269, 304, 317
Cfr42I CCGCGG 1 cut(s) 289
CseI GACGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 115, 619
CviAII CATG 4 cut(s) 118, 154, 160, 301
CviQI GTAC 2 cut(s) 115, 619
DinI GGCGCC 2 cut(s) 298, 313
DpnI GATC 2 cut(s) 122, 197
DpnII GATC 2 cut(s) 120, 195
DraIII CACNNNGTG 1 cut(s) 406
EaeI YGGCCR 2 cut(s) 156, 273
EagI CGGCCG 1 cut(s) 273
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 30
Eco52I CGGCCG 1 cut(s) 273
Eco72I CACGTG 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 185, 243
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 251
EgeI GGCGCC 2 cut(s) 298, 313
EheI GGCGCC 2 cut(s) 298, 313
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 4 cut(s) 121, 157, 163, 304
FaiI YATR 8 cut(s) 119, 134, 155, 161, 302, 431, 461, 567
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 524
FatI CATG 4 cut(s) 117, 153, 159, 300
FblI GTMKAC 2 cut(s) 333, 345
Fnu4HI GCNGC 3 cut(s) 396, 476, 627
FokI GGATG 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 3 cut(s) 396, 476, 627
GlaI GCGC 5 cut(s) 298, 313, 399, 421, 591
GluI GCNGC 3 cut(s) 396, 476, 627
HaeII RGCGCY 2 cut(s) 300, 315
HaeIII GGCC 6 cut(s) 99, 158, 270, 275, 306, 318
HapII CCGG 9 cut(s) 28, 126, 138, 235, 272, 276, 315, 320, 411
HgaI GACGC 1 cut(s) 446
HhaI GCGC 5 cut(s) 299, 314, 400, 422, 592
Hin1I GRCGYC 2 cut(s) 297, 312
Hin1II CATG 4 cut(s) 121, 157, 163, 304
Hin6I GCGC 5 cut(s) 297, 312, 398, 420, 590
HinP1I GCGC 5 cut(s) 297, 312, 398, 420, 590
HincII GTYRAC 2 cut(s) 172, 220
HindII GTYRAC 2 cut(s) 172, 220
HinfI GANTC 1 cut(s) 231
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 9 cut(s) 28, 126, 138, 235, 272, 276, 315, 320, 411
HphI GGTGA 2 cut(s) 454, 592
Hpy166II GTNNAC 6 cut(s) 6, 172, 220, 334, 346, 597
Hpy188I TCNGA 1 cut(s) 230
Hpy188III TCNNGA 2 cut(s) 28, 520
Hpy8I GTNNAC 6 cut(s) 6, 172, 220, 334, 346, 597
Hpy99I CGWCG 3 cut(s) 98, 230, 440
HpyAV CCTTC 2 cut(s) 260, 533
HpyCH4III ACNGT 3 cut(s) 427, 515, 577
HpyCH4IV ACGT 2 cut(s) 373, 617
HpyCH4V TGCA 3 cut(s) 193, 357, 478
HpyF10VI GCNNNNNNNGC 5 cut(s) 294, 303, 320, 401, 475
HpySE526I ACGT 2 cut(s) 373, 617
Hsp92I GRCGYC 2 cut(s) 297, 312
Hsp92II CATG 4 cut(s) 121, 157, 163, 304
HspAI GCGC 5 cut(s) 297, 312, 398, 420, 590
KasI GGCGCC 2 cut(s) 296, 311
Kpn2I TCCGGA 1 cut(s) 27
KroI GCCGGC 2 cut(s) 137, 314
KroNI GCCGGC 2 cut(s) 139, 316
KspAI GTTAAC 1 cut(s) 220
KspI CCGCGG 1 cut(s) 289
Kzo9I GATC 2 cut(s) 120, 195
LmnI GCTCC 3 cut(s) 146, 254, 361
Lsp1109I GCAGC 1 cut(s) 462
LweI GCATC 1 cut(s) 180
MaeII ACGT 2 cut(s) 373, 617
MalI GATC 2 cut(s) 122, 197
MboI GATC 2 cut(s) 120, 195
MboII GAAGA 1 cut(s) 190
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 3 cut(s) 153, 251, 366
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 1 cut(s) 291
MluNI TGGCCA 1 cut(s) 158
Mly113I GGCGCC 2 cut(s) 297, 312
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 3 cut(s) 85, 208, 462
Mox20I TGGCCA 1 cut(s) 158
MroI TCCGGA 1 cut(s) 27
MroNI GCCGGC 2 cut(s) 137, 314
MscI TGGCCA 1 cut(s) 158
MseI TTAA 2 cut(s) 102, 219
MslI CAYNNNNRTG 2 cut(s) 158, 578
Msp20I TGGCCA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 288
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 9 cut(s) 28, 126, 138, 235, 272, 276, 315, 320, 411
MspR9I CCNGG 4 cut(s) 187, 245, 272, 320
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 2 cut(s) 187, 245
MvnI CGCG 4 cut(s) 288, 404, 422, 440
MwoI GCNNNNNNNGC 5 cut(s) 294, 303, 320, 401, 475
NaeI GCCGGC 2 cut(s) 139, 316
NarI GGCGCC 2 cut(s) 297, 312
NciI CCSGG 2 cut(s) 272, 320
NcoI CCATGG 1 cut(s) 300
NdeII GATC 2 cut(s) 120, 195
NgoMIV GCCGGC 2 cut(s) 137, 314
NlaIII CATG 4 cut(s) 121, 157, 163, 304
NlaIV GGNNCC 7 cut(s) 32, 130, 142, 208, 250, 298, 313
NmeAIII GCCGAG 2 cut(s) 288, 371
OliI CACNNNNGTG 1 cut(s) 578
PasI CCCWGGG 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PctI GAATGC 1 cut(s) 592
PdiI GCCGGC 2 cut(s) 139, 316
Pfl23II CGTACG 1 cut(s) 618
PflFI GACNNNGTC 1 cut(s) 515
PkrI GCNGC 3 cut(s) 397, 477, 628
PleI GAGTC 1 cut(s) 239
PluTI GGCGCC 2 cut(s) 300, 315
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
PpsI GAGTC 1 cut(s) 239
Ppu21I YACGTR 2 cut(s) 374, 618
Psp6I CCWGG 2 cut(s) 185, 243
PspCI CACGTG 1 cut(s) 374
PspGI CCWGG 2 cut(s) 185, 243
PspLI CGTACG 1 cut(s) 618
PspN4I GGNNCC 7 cut(s) 32, 130, 142, 208, 250, 298, 313
PspPI GGNCC 4 cut(s) 30, 269, 304, 317
PstI CTGCAG 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 515
RsaI GTAC 2 cut(s) 116, 620
RsaNI GTAC 2 cut(s) 115, 619
RseI CAYNNNNRTG 2 cut(s) 158, 578
SacII CCGCGG 1 cut(s) 289
SaqAI TTAA 2 cut(s) 102, 219
SatI GCNGC 3 cut(s) 396, 476, 627
Sau3AI GATC 2 cut(s) 120, 195
Sau96I GGNCC 4 cut(s) 30, 269, 304, 317
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 4 cut(s) 187, 245, 272, 320
SduI GDGCHC 3 cut(s) 153, 251, 366
SetI ASST 3 cut(s) 264, 376, 620
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 476
SfoI GGCGCC 2 cut(s) 298, 313
Sfr303I CCGCGG 1 cut(s) 289
SgrBI CCGCGG 1 cut(s) 289
SinI GGWCC 1 cut(s) 30
SmiMI CAYNNNNRTG 2 cut(s) 158, 578
SmlI CTYRAG 2 cut(s) 101, 257
SmoI CTYRAG 2 cut(s) 101, 257
Sse9I AATT 1 cut(s) 291
SsiI CCGC 7 cut(s) 286, 288, 395, 404, 440, 602, 626
SspDI GGCGCC 2 cut(s) 296, 311
StyD4I CCNGG 4 cut(s) 185, 243, 270, 318
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 427, 515, 577
TaiI ACGT 2 cut(s) 376, 620
TaqI TCGA 2 cut(s) 54, 264
TasI AATT 1 cut(s) 291
TatI WGTACW 1 cut(s) 114
TauI GCSGC 2 cut(s) 398, 629
Tru1I TTAA 2 cut(s) 102, 219
Tru9I TTAA 2 cut(s) 102, 219
TseI GCWGC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 596, 599
TspGWI ACGGA 3 cut(s) 133, 205, 331
Tth111I GACNNNGTC 1 cut(s) 515
Vha464I CTTAAG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 30
XmiI GTMKAC 2 cut(s) 333, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.