Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002913

Physical Location & Seq

Genomic Coordinates Reverse (-)

57040206 .. 57040606

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0412800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCTCCATCAATTGATCAACTGCCTACCCAACAAGAAATCCCTTTTGTGGGCATTGGCATGAAAAGGAAGCGTGGTAAATCATGTGGTAAAGCTCTTCAGAAGCTTATAAAGGCTTATGGTGGACCTCTGCATGTTGACTTTCATCCGACCATCCATGTCCCTTCTGATGACACAATTTCTAAAATGTTTACTTCTGAGATAGGAATTACTGTACGGAGTGGGGCACCAGTATGCAAATATGGCTGGTCTGATGTTGATGAAGATGATAAGAGGCTGCTAAGAGAGGATCTGCAGGTGATTTTATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0008152 GO:0008324 GO:0008380 GO:0009987 GO:0010467 GO:0015075 GO:0015093 GO:0015318 GO:0015684 GO:0016020 GO:0016021 GO:0016070 GO:0019866 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0034641 GO:0034755 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046873 GO:0046915 GO:0048250 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071704 GO:0072509 GO:0072511 GO:0090304 GO:0097286 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901360 GO:1903874 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

7.8

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07030 AT2G30160
fragaria_vesca	FvH4_3g39670 FvH4_6g10760
malus_domestica	MD03G1055400.v1.1 MD04G1164600.v1.1 MD11G1056500.v1.1 MD12G1178600.v1.1
prunus_persica	Prupe.6G049200_v2.0.a1 Prupe.6G283800_v2.0.a1
pyrus_communis	pycom03g04410 pycom04g14690 pycom11g04760 pycom12g16860
rosa_chinensis	RchiOBHm_Chr3g0461801 RchiOBHm_Chr5g0071521
rosa_laevigata	RLG00000024897 RLG00000036221
rosa_multiflora	Rmu_co8336553.1_g000001 Rmu_sc0004308.1_g000012 Rmu_sc0005745.1_g000006 Rmu_sc0007777.1_g000002 Rmu_sc0022017.1_g000001 Rmu_sc0022018.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009630 Rroxscaffold_6G00417910
rosa_rugosa	Rorug03G0053800 Rorug05G0412800
rosa_samantha	Rh3AG111800 Rh3BG115100 Rh3CG117300 Rh3DG116800 Rh5AG469000 Rh5BG488100 Rh5CG512200 Rh5DG498900
rosa_wichuraiana	Rw3G009480 Rw5G043570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	49, 50
AluBI	AGCT	2 cut(s)	95, 106
AluI	AGCT	2 cut(s)	95, 106
AlwI	GGATC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	2 cut(s)	16, 161
BclI	TGATCA	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	6, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 50
Bse1I	ACTGG	1 cut(s)	230
BseGI	GGATG	2 cut(s)	145, 153
BseLI	CCNNNNNNNGG	2 cut(s)	49, 50
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	49, 50
BsmFI	GGGAC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	16, 289
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	6, 228
BspMAI	CTGCAG	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	2 cut(s)	16, 289
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	198, 281
BstF5I	GGATG	2 cut(s)	145, 153
BstKTI	GATC	2 cut(s)	19, 292
BstMBI	GATC	2 cut(s)	16, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	145, 153
BveI	ACCTGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	4 cut(s)	61, 84, 134, 158
CviJI	RGCY	6 cut(s)	5, 95, 106, 116, 246, 277
CviKI_1	RGCY	6 cut(s)	5, 95, 106, 116, 246, 277
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	2 cut(s)	198, 281
DpnI	GATC	2 cut(s)	18, 291
DpnII	GATC	2 cut(s)	16, 289
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	83
FaeI	CATG	4 cut(s)	64, 87, 137, 161
FaiI	YATR	8 cut(s)	62, 85, 110, 120, 135, 159, 235, 243
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	60, 83, 133, 157
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	2 cut(s)	132, 140
Fsp4HI	GCNGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	278
Hin1II	CATG	4 cut(s)	64, 87, 137, 161
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	104
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	125, 139, 192
Hpy188I	TCNGA	5 cut(s)	102, 150, 169, 199, 253
Hpy8I	GTNNAC	3 cut(s)	125, 139, 192
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	133, 237, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	2 cut(s)	198, 281
Hsp92II	CATG	4 cut(s)	64, 87, 137, 161
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 289
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	3 cut(s)	232, 243, 281
Lsp1109I	GCAGC	1 cut(s)	264
MalI	GATC	2 cut(s)	18, 291
MboI	GATC	2 cut(s)	16, 289
MboII	GAAGA	2 cut(s)	89, 275
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	3 cut(s)	12, 177, 207
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	3 cut(s)	138, 267, 280
MslI	CAYNNNNRTG	2 cut(s)	59, 232
MunI	CAATTG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	243
NdeII	GATC	2 cut(s)	16, 289
NlaIII	CATG	4 cut(s)	64, 87, 137, 161
NlaIV	GGNNCC	2 cut(s)	6, 228
NspI	RCATGY	1 cut(s)	137
PaqCI	CACCTGC	1 cut(s)	286
PciSI	GCTCTTC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	279
PsiI	TTATAA	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	6, 228
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	2 cut(s)	59, 232
SapI	GCTCTTC	1 cut(s)	102
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	2 cut(s)	16, 289
Sau96I	GGNCC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	4 cut(s)	97, 108, 130, 300
SfcI	CTRYAG	1 cut(s)	293
SgeI	CNNG	9 cut(s)	47, 73, 86, 96, 146, 170, 242, 259, 308
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	59, 232
Sse9I	AATT	3 cut(s)	12, 177, 207
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	3 cut(s)	12, 177, 207
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	77, 134, 276
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	125
XceI	RCATGY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.