RLG00000036221

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
77612058 .. 77614900
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036221

Sequence Viewer

Length: 1011 bp
ATGGCCACAGACGCAAAGCCCAAGTTCCAAAACCCAGACTTCCGCCCGATTCCACAGCAGCCCACCGACTACGGCCCACCGGACCTCGCCGCCGCCGCTGCCTCCTCCCACGACGGCCTACACTTCTGGCAGTTCATGATCGCCGGCTCAATCGCCGGCATGGTCGAGCACATGGCCATGTTCCCCGTCGACACCGTCAAAACCCATATGCAAGCTCTCGGGTCCTGCCCGATTAAGTCGGTCGGAATCCGGCAGGCCCTCGGCTCCATTATGAAGAGCGAGGGCCCCGCCGGGCTCTACCGCGGCATTGCCGCCATGGGCCTCGGCGCCGGGCCGGCCCACGCCGTCTACTTCTCGGTCTACGAAATCTCCAAGAAGTATTTTTCCGGCGGGAATCCCAACAACTCCGCCGCCCACGCCGTCTCCGGAGTGTTCGCGACGGTTGCGAGCGACGCCGTTTTGACGCCGATGGATATGGTGAAGCAGAGGCTGCAGCTGGGGAATAGCCCCCTCTACAAGGGTGTGTGGGATTGTGTGAAGAAGGTGTTTAGGGAAGATGGGATTAGAGCCTTTTACGCTAGTTATAGGACTACTGTGTTGATGAATGCGCCGTTCACAGCGGTGCATTTCGCGACGTATGAGGCGGTGAAGAAGGGGTTGATGGAGATCTCGCCGGAGCACGCGGATGAGGAGAGGCTGATTGTTCATGCTACTGCTGGTGCTGCAGCTGGAGGATTGGCCTCAGTGGTCACCACGCCGCTTGATGTGGTCAAAACTCAATTACAGTGTCAGGGCATTTGTGGGTGTGACAGATTTAAAAGTGGTTCGATTGGAGATGTTGTTCGAACAATACTGAGAAAGGATGGGTATAGAGGGCTTTTGAGAGGATGGGCTCCGAGAATGCTATTCCATGCCCCTGCTGCTGCTATCTGCTGGTCAACATATGAGGCTTCGAAGACCTTCTTCCAGGAACACAATGGTAGTGGTAGTAACAGTGGCACTGTAACCTGA

Protein Analysis

337

Amino Acids

35.94

Weight (kDa)

8.81

Isoelectric Point (pI)

21.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 40 - 130 6.1e-23 Mitochondrial carrier protein
Mito_carr PF00153 134 - 222 2.2e-22 Mitochondrial carrier protein
Mito_carr PF00153 232 - 325 1e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AccI GTMKAC 3 cut(s) 189, 348, 360
AccII CGCG 4 cut(s) 303, 437, 632, 683
AccIII TCCGGA 1 cut(s) 425
AcoI YGGCCR 2 cut(s) 3, 174
AcyI GRCGYC 3 cut(s) 327, 453, 464
AfiI CCNNNNNNNGG 1 cut(s) 517
AjnI CCWGG 1 cut(s) 966
AleI CACNNNNGTG 1 cut(s) 620
AloI GAACNNNNNNTCC 2 cut(s) 825, 857
AluBI AGCT 3 cut(s) 215, 496, 728
AluI AGCT 3 cut(s) 215, 496, 728
Alw21I GWGCWC 2 cut(s) 171, 681
Alw26I GTCTC 1 cut(s) 427
AlwNI CAGNNNCTG 1 cut(s) 490
Ama87I CYCGRG 1 cut(s) 218
Aor13HI TCCGGA 1 cut(s) 425
ApaI GGGCCC 1 cut(s) 287
ApeKI GCWGC 8 cut(s) 58, 98, 490, 493, 722, 725, 920, 923
Asp700I GAANNNNTTC 1 cut(s) 959
AspLEI GCGC 2 cut(s) 329, 610
AspS9I GGNCC 9 cut(s) 74, 82, 222, 256, 283, 284, 319, 332, 337
AsuC2I CCSGG 2 cut(s) 292, 331
AsuHPI GGTGA 3 cut(s) 490, 658, 742
AsuII TTCGAA 2 cut(s) 844, 953
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 2 cut(s) 82, 222
BaeGI GKGCMC 1 cut(s) 287
BalI TGGCCA 2 cut(s) 5, 176
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 3 cut(s) 287, 297, 895
BbsI GAAGAC 1 cut(s) 962
Bbv12I GWGCWC 2 cut(s) 171, 681
BbvI GCAGC 8 cut(s) 70, 85, 477, 505, 709, 737, 907, 910
BccI CCATC 5 cut(s) 463, 551, 655, 857, 882
BceAI ACGGC 6 cut(s) 88, 130, 329, 404, 440, 595
BciT130I CCWGG 1 cut(s) 968
BcnI CCSGG 2 cut(s) 292, 331
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 2 cut(s) 491, 723
BfoI RGCGCY 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 335
BglII AGATCT 1 cut(s) 666
Bme1390I CCNGG 3 cut(s) 292, 331, 968
Bme18I GGWCC 2 cut(s) 82, 222
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 9 cut(s) 74, 82, 222, 256, 283, 284, 319, 332, 337
BmiI GGNNCC 6 cut(s) 223, 265, 285, 286, 328, 894
BmrFI CCNGG 3 cut(s) 292, 331, 968
BpiI GAAGAC 1 cut(s) 962
BpmI CTGGAG 1 cut(s) 750
Bpu14I TTCGAA 2 cut(s) 844, 953
BpuMI CCSGG 2 cut(s) 292, 331
BsaBI GATNNNNATC 1 cut(s) 665
BsaHI GRCGYC 3 cut(s) 327, 453, 464
BsaJI CCNNGG 4 cut(s) 259, 301, 315, 322
BsaWI WCCGGW 2 cut(s) 79, 425
BsaXI ACNNNNNCTCC 6 cut(s) 353, 383, 407, 437, 825, 855
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse118I RCCGGY 3 cut(s) 143, 155, 334
Bse3DI GCAATG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 665
BseAI TCCGGA 1 cut(s) 425
BseBI CCWGG 1 cut(s) 968
BseDI CCNNGG 4 cut(s) 259, 301, 315, 322
BseGI GGATG 3 cut(s) 691, 868, 893
BseJI GATNNNNATC 1 cut(s) 665
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 756, 845
BseRI GAGGAG 2 cut(s) 94, 704
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 8 cut(s) 70, 85, 477, 505, 709, 737, 907, 910
BseYI CCCAGC 1 cut(s) 496
Bsh1236I CGCG 4 cut(s) 303, 437, 632, 683
Bsh1285I CGRYCG 1 cut(s) 243
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 171, 681
BsiHKCI CYCGRG 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 1 cut(s) 427
BsmBI CGTCTC 1 cut(s) 427
BsmI GAATGC 2 cut(s) 610, 906
BsoBI CYCGRG 1 cut(s) 218
Bsp119I TTCGAA 2 cut(s) 844, 953
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 5 cut(s) 171, 287, 297, 681, 895
Bsp13I TCCGGA 1 cut(s) 425
Bsp143I GATC 2 cut(s) 138, 666
Bsp19I CCATGG 1 cut(s) 315
Bsp68I TCGCGA 2 cut(s) 437, 632
BspCNI CTCAG 2 cut(s) 755, 846
BspEI TCCGGA 1 cut(s) 425
BspFNI CGCG 4 cut(s) 303, 437, 632, 683
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 6 cut(s) 223, 265, 285, 286, 328, 894
BspMAI CTGCAG 2 cut(s) 495, 727
BspQI GCTCTTC 1 cut(s) 269
BspT104I TTCGAA 2 cut(s) 844, 953
BspT107I GGYRCC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 3 cut(s) 143, 155, 334
BssAI RCCGGY 3 cut(s) 143, 155, 334
BssECI CCNNGG 4 cut(s) 259, 301, 315, 322
BssMI GATC 2 cut(s) 138, 666
BssNI GRCGYC 3 cut(s) 327, 453, 464
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 968
Bst4CI ACNGT 6 cut(s) 196, 442, 595, 786, 995, 1003
Bst6I CTCTTC 1 cut(s) 269
BstACI GRCGYC 3 cut(s) 327, 453, 464
BstAPI GCANNNNNTGC 1 cut(s) 490
BstBI TTCGAA 2 cut(s) 844, 953
BstC8I GCNNGC 7 cut(s) 145, 157, 213, 255, 336, 448, 681
BstDEI CTNAG 2 cut(s) 742, 854
BstDSI CCRYGG 2 cut(s) 301, 315
BstEII GGTNACC 1 cut(s) 748
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 3 cut(s) 691, 868, 893
BstFNI CGCG 4 cut(s) 303, 437, 632, 683
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 2 cut(s) 329, 610
BstKTI GATC 2 cut(s) 141, 669
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 2 cut(s) 138, 666
BstMCI CGRYCG 1 cut(s) 243
BstNI CCWGG 1 cut(s) 968
BstPI GGTNACC 1 cut(s) 748
BstSCI CCNGG 3 cut(s) 290, 329, 966
BstSFI CTRYAG 2 cut(s) 491, 723
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 4 cut(s) 303, 437, 632, 683
BstV1I GCAGC 8 cut(s) 70, 85, 477, 505, 709, 737, 907, 910
BstV2I GAAGAC 1 cut(s) 962
BstX2I RGATCY 1 cut(s) 666
BstYI RGATCY 1 cut(s) 666
BtgI CCRYGG 2 cut(s) 301, 315
BtsCI GGATG 3 cut(s) 691, 868, 893
BtsIMutI CAGTG 4 cut(s) 750, 791, 999, 1000
BtuMI TCGCGA 2 cut(s) 437, 632
Cac8I GCNNGC 7 cut(s) 145, 157, 213, 255, 336, 448, 681
CaiI CAGNNNCTG 1 cut(s) 490
CciI TCATGA 1 cut(s) 135
CfoI GCGC 2 cut(s) 329, 610
Cfr10I RCCGGY 3 cut(s) 143, 155, 334
Cfr13I GGNCC 9 cut(s) 74, 82, 222, 256, 283, 284, 319, 332, 337
Cfr42I CCGCGG 1 cut(s) 304
CseI GACGC 3 cut(s) 20, 461, 472
CspCI CAANNNNNGTGG 4 cut(s) 742, 777, 964, 999
CviAII CATG 7 cut(s) 136, 160, 172, 178, 316, 707, 911
DdeI CTNAG 2 cut(s) 742, 854
DinI GGCGCC 1 cut(s) 328
DpnI GATC 2 cut(s) 140, 668
DpnII GATC 2 cut(s) 138, 666
DraI TTTAAA 1 cut(s) 817
EaeI YGGCCR 2 cut(s) 3, 174
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
EciI GGCGGA 2 cut(s) 32, 397
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 3 cut(s) 287, 297, 895
Eco47I GGWCC 2 cut(s) 82, 222
Eco88I CYCGRG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 748
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoO109I RGGNCCY 4 cut(s) 222, 256, 283, 284
EcoO65I GGTNACC 1 cut(s) 748
EcoRII CCWGG 1 cut(s) 966
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 3 cut(s) 287, 297, 895
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 7 cut(s) 139, 163, 175, 181, 319, 710, 914
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FatI CATG 7 cut(s) 135, 159, 171, 177, 315, 706, 910
FauI CCCGC 2 cut(s) 295, 383
FauNDI CATATG 2 cut(s) 207, 943
FblI GTMKAC 3 cut(s) 189, 348, 360
FokI GGATG 3 cut(s) 698, 875, 900
FriOI GRGCYC 3 cut(s) 287, 297, 895
FseI GGCCGGCC 1 cut(s) 338
FspBI CTAG 1 cut(s) 579
GlaI GCGC 2 cut(s) 328, 609
GsaI CCCAGC 1 cut(s) 500
GsuI CTGGAG 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 330
HgaI GACGC 3 cut(s) 20, 461, 472
HhaI GCGC 2 cut(s) 329, 610
Hin1I GRCGYC 3 cut(s) 327, 453, 464
Hin1II CATG 7 cut(s) 139, 163, 175, 181, 319, 710, 914
Hin6I GCGC 2 cut(s) 327, 608
HinP1I GCGC 2 cut(s) 327, 608
HincII GTYRAC 2 cut(s) 190, 939
HindII GTYRAC 2 cut(s) 190, 939
HinfI GANTC 3 cut(s) 49, 246, 394
HphI GGTGA 3 cut(s) 490, 658, 742
Hpy166II GTNNAC 5 cut(s) 190, 349, 361, 615, 939
Hpy188I TCNGA 2 cut(s) 245, 897
Hpy188III TCNNGA 4 cut(s) 136, 426, 436, 631
Hpy8I GTNNAC 5 cut(s) 190, 349, 361, 615, 939
Hpy99I CGWCG 5 cut(s) 116, 191, 442, 455, 637
HpyAV CCTTC 3 cut(s) 535, 646, 970
HpyCH4III ACNGT 6 cut(s) 196, 442, 595, 786, 995, 1003
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 4 cut(s) 211, 493, 625, 725
HpyF3I CTNAG 2 cut(s) 742, 854
HpySE526I ACGT 1 cut(s) 635
Hsp92I GRCGYC 3 cut(s) 327, 453, 464
Hsp92II CATG 7 cut(s) 139, 163, 175, 181, 319, 710, 914
HspAI GCGC 2 cut(s) 327, 608
KasI GGCGCC 1 cut(s) 326
Kpn2I TCCGGA 1 cut(s) 425
KroI GCCGGC 3 cut(s) 143, 155, 334
KroNI GCCGGC 3 cut(s) 145, 157, 336
KspI CCGCGG 1 cut(s) 304
Kzo9I GATC 2 cut(s) 138, 666
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 3 cut(s) 269, 676, 898
Lsp1109I GCAGC 8 cut(s) 70, 85, 477, 505, 709, 737, 907, 910
MaeI CTAG 1 cut(s) 579
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 4 cut(s) 748, 806, 989, 1003
MalI GATC 2 cut(s) 140, 668
MboI GATC 2 cut(s) 138, 666
MboII GAAGA 6 cut(s) 286, 550, 566, 661, 955, 967
MflI RGATCY 1 cut(s) 666
MhlI GDGCHC 5 cut(s) 171, 287, 297, 681, 895
MlsI TGGCCA 2 cut(s) 5, 176
MluCI AATT 1 cut(s) 779
MluNI TGGCCA 2 cut(s) 5, 176
Mly113I GGCGCC 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 223
Mox20I TGGCCA 2 cut(s) 5, 176
MroI TCCGGA 1 cut(s) 425
MroNI GCCGGC 3 cut(s) 143, 155, 334
MroXI GAANNNNTTC 1 cut(s) 959
MscI TGGCCA 2 cut(s) 5, 176
MseI TTAA 2 cut(s) 234, 816
MslI CAYNNNNRTG 3 cut(s) 176, 620, 684
Msp20I TGGCCA 2 cut(s) 5, 176
MspA1I CMGCKG 5 cut(s) 98, 303, 496, 620, 728
MspR9I CCNGG 3 cut(s) 292, 331, 968
Mva1269I GAATGC 2 cut(s) 610, 906
MvaI CCWGG 1 cut(s) 968
MvnI CGCG 4 cut(s) 303, 437, 632, 683
NaeI GCCGGC 3 cut(s) 145, 157, 336
NarI GGCGCC 1 cut(s) 327
NciI CCSGG 2 cut(s) 292, 331
NcoI CCATGG 1 cut(s) 315
NdeI CATATG 2 cut(s) 207, 943
NdeII GATC 2 cut(s) 138, 666
NgoMIV GCCGGC 3 cut(s) 143, 155, 334
NlaIII CATG 7 cut(s) 139, 163, 175, 181, 319, 710, 914
NlaIV GGNNCC 6 cut(s) 223, 265, 285, 286, 328, 894
NmeAIII GCCGAG 2 cut(s) 240, 303
NmuCI GTSAC 2 cut(s) 748, 806
NruI TCGCGA 2 cut(s) 437, 632
NspV TTCGAA 2 cut(s) 844, 953
OliI CACNNNNGTG 1 cut(s) 620
PagI TCATGA 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 269
PctI GAATGC 2 cut(s) 610, 906
PdiI GCCGGC 3 cut(s) 145, 157, 336
PdmI GAANNNNTTC 1 cut(s) 959
PfeI GAWTC 3 cut(s) 49, 246, 394
PflFI GACNNNGTC 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 966
PluTI GGCGCC 1 cut(s) 330
PpuMI RGGWCCY 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 966
PspEI GGTNACC 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 1 cut(s) 966
PspN4I GGNNCC 6 cut(s) 223, 265, 285, 286, 328, 894
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 9 cut(s) 74, 82, 222, 256, 283, 284, 319, 332, 337
PspPPI RGGWCCY 1 cut(s) 222
PstI CTGCAG 2 cut(s) 495, 727
PstNI CAGNNNCTG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 666
PsyI GACNNNGTC 1 cut(s) 194
PvuII CAGCTG 2 cut(s) 496, 728
RigI GGCCGGCC 1 cut(s) 338
RruI TCGCGA 2 cut(s) 437, 632
RseI CAYNNNNRTG 3 cut(s) 176, 620, 684
SacII CCGCGG 1 cut(s) 304
SalI GTCGAC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 234, 816
Sau3AI GATC 2 cut(s) 138, 666
Sau96I GGNCC 9 cut(s) 74, 82, 222, 256, 283, 284, 319, 332, 337
ScrFI CCNGG 3 cut(s) 292, 331, 968
SduI GDGCHC 5 cut(s) 171, 287, 297, 681, 895
SetI ASST 8 cut(s) 87, 217, 498, 546, 638, 730, 962, 1010
SfcI CTRYAG 2 cut(s) 491, 723
SfoI GGCGCC 1 cut(s) 328
Sfr303I CCGCGG 1 cut(s) 304
SfuI TTCGAA 2 cut(s) 844, 953
SgrBI CCGCGG 1 cut(s) 304
SinI GGWCC 2 cut(s) 82, 222
SmiMI CAYNNNNRTG 3 cut(s) 176, 620, 684
Sse9I AATT 1 cut(s) 779
SspDI GGCGCC 1 cut(s) 326
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 3 cut(s) 290, 329, 966
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 6 cut(s) 196, 442, 595, 786, 995, 1003
TaiI ACGT 1 cut(s) 638
TaqI TCGA 5 cut(s) 165, 189, 827, 844, 953
TaqII GACCGA 2 cut(s) 229, 346
TasI AATT 1 cut(s) 779
TauI GCSGC 7 cut(s) 92, 95, 98, 306, 314, 413, 760
TfiI GAWTC 3 cut(s) 49, 246, 394
Tru1I TTAA 2 cut(s) 234, 816
Tru9I TTAA 2 cut(s) 234, 816
TscAI CASTG 4 cut(s) 750, 791, 1000, 1006
TseFI GTSAC 2 cut(s) 748, 806
TseI GCWGC 8 cut(s) 58, 98, 490, 493, 722, 725, 920, 923
Tsp45I GTSAC 2 cut(s) 748, 806
TspDTI ATGAA 4 cut(s) 124, 287, 617, 695
TspRI CASTG 4 cut(s) 750, 791, 1000, 1006
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 82, 222
XagI CCTNNNNNAGG 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 974
XmiI GTMKAC 3 cut(s) 189, 348, 360
XmnI GAANNNNTTC 1 cut(s) 959
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.