FvH4_3g39670

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
33670550 .. 33673187
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39670.t1

Sequence Viewer

Length: 999 bp
ATGGCCACAGACGCAAAGCCCAAGTTCCAAAACCCGGACTTCCGCCCCATTCCAAAACCCGACCTCGCCTCCACCTCCACCGCCGCCTCGGCTCACGATGGCCTCCACTTCTGGCAGTTCATGATCGCCGGCTCAATCGCCGGTATGGTCGAGCACATGGCCATGTTCCCCGTCGACACCGTCAAGACCCATATGCAAGCTCTCGGGTCATGCCCGATTAAGTCGGTCGGAATCCGGCAGGCCCTCGGATCCATTATGAAGATCGAGGGCGCCGCCGGGCTCTACCGCGGCATTGGCGCCATGGGCCTCGGCGCCGGCCCGGCCCACGCCGTCTACTTCTCGGTGTACGAAATCTCCAAGAAGTATTTTTCCGGCGGGAATCCCAACAACTCCGCCGCCCACGCCGTTTCCGGGGTTTTCGCTACGGTTGCGAGCGACGCCGTTTTGACGCCGATGGATATGGTGAAGCAGAGGCTGCAGCTGGGGAATAGCCCCTACAAGGGTGTGTGGGATTGTGTGAAGAAGGTGTTTAGGGAAGATGGGATTAGAGCGTTTTACGCTAGTTATAGGACTACTGTGTTGATGAATGCGCCCTTCACGGCGGTGCATTTCGCCACGTACGAGGCGGTGAAAAAGGGGTTGATGGAGATTTCGCCGGAGCATGCGGATGAGGAGAGGCTGATTGTTCATGCTACTGCTGGTGCTGCAGCTGGAGGATTGGCCTCGGTTGTCACTACACCGCTTGATGTGGTGAAAACTCAATTACAGTGTCAGGGTATTTGCGGGTGTGACAGATTTAAAAGTGGTTCAATTGGAGACGTTGTCCGAACAATACTGAGAAAGGATGGATACAGAGGGCTTGTGAGAGGATGGGCTCCGAGAATGCTATTCCATGCCCCTGCTGCTGCTATCTGCTGGTCAACATATGAAGCGTCAAAGACTTTCTTTCAAGAACTCAATGGTAGTAGTAGTAGTAGTAACAGTGGCACTGTAACCTGA

Protein Analysis

333

Amino Acids

35.44

Weight (kDa)

9.05

Isoelectric Point (pI)

19.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 35 - 125 5.5e-22 Mitochondrial carrier protein
Mito_carr PF00153 129 - 216 2.7e-23 Mitochondrial carrier protein
Mito_carr PF00153 226 - 318 3.1e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 269, 296, 311
AccI GTMKAC 2 cut(s) 174, 333
AccII CGCG 1 cut(s) 288
AclWI GGATC 2 cut(s) 243, 256
AcoI YGGCCR 2 cut(s) 3, 159
AcyI GRCGYC 5 cut(s) 270, 297, 312, 438, 449
AfaI GTAC 2 cut(s) 347, 620
AfiI CCNNNNNNNGG 4 cut(s) 34, 411, 499, 500
AgsI TTSAA 2 cut(s) 810, 950
AleI CACNNNNGTG 1 cut(s) 602
AluBI AGCT 3 cut(s) 200, 481, 710
AluI AGCT 3 cut(s) 200, 481, 710
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 810
AlwI GGATC 2 cut(s) 243, 256
AlwNI CAGNNNCTG 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 8 cut(s) 3, 100, 159, 240, 304, 316, 321, 720
ApeKI GCWGC 6 cut(s) 475, 478, 704, 707, 902, 905
AspLEI GCGC 4 cut(s) 272, 299, 314, 592
AspS9I GGNCC 4 cut(s) 241, 304, 317, 322
AsuC2I CCSGG 4 cut(s) 35, 277, 320, 412
AsuHPI GGTGA 3 cut(s) 475, 640, 763
AvaI CYCGRG 1 cut(s) 203
BalI TGGCCA 2 cut(s) 5, 161
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 3 cut(s) 269, 296, 311
BanII GRGCYC 2 cut(s) 282, 877
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 6 cut(s) 462, 490, 691, 719, 889, 892
BccI CCATC 6 cut(s) 92, 448, 533, 637, 839, 864
BceAI ACGGC 4 cut(s) 314, 389, 425, 615
BciVI GTATCC 1 cut(s) 842
BcnI CCSGG 4 cut(s) 35, 277, 320, 412
BcoDI GTCTC 1 cut(s) 810
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 2 cut(s) 476, 705
BfoI RGCGCY 3 cut(s) 273, 300, 315
BfuI GTATCC 1 cut(s) 842
BglI GCCNNNNNGGC 2 cut(s) 89, 320
Bme1390I CCNGG 4 cut(s) 35, 277, 320, 412
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 4 cut(s) 241, 304, 317, 322
BmiI GGNNCC 5 cut(s) 250, 271, 298, 313, 876
BmrFI CCNGG 4 cut(s) 35, 277, 320, 412
BpmI CTGGAG 1 cut(s) 732
BpuMI CCSGG 4 cut(s) 35, 277, 320, 412
BsaAI YACGTR 1 cut(s) 618
BsaHI GRCGYC 5 cut(s) 270, 297, 312, 438, 449
BsaJI CCNNGG 7 cut(s) 87, 244, 286, 300, 307, 411, 723
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 338, 368, 807, 837
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 411, 499, 500
Bse118I RCCGGY 3 cut(s) 128, 140, 314
BseDI CCNNGG 7 cut(s) 87, 244, 286, 300, 307, 411, 723
BseGI GGATG 3 cut(s) 673, 850, 875
BseLI CCNNNNNNNGG 4 cut(s) 34, 411, 499, 500
BseMII CTCAG 1 cut(s) 827
BseRI GAGGAG 1 cut(s) 686
BseXI GCAGC 6 cut(s) 462, 490, 691, 719, 889, 892
BseYI CCCAGC 1 cut(s) 481
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 8 cut(s) 5, 102, 161, 242, 306, 318, 323, 722
BshNI GGYRCC 3 cut(s) 269, 296, 311
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 203
BsiWI CGTACG 1 cut(s) 618
BslI CCNNNNNNNGG 4 cut(s) 34, 411, 499, 500
BsmAI GTCTC 1 cut(s) 810
BsmBI CGTCTC 1 cut(s) 810
BsmI GAATGC 2 cut(s) 592, 888
BsnI GGCC 8 cut(s) 5, 102, 161, 242, 306, 318, 323, 722
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 3 cut(s) 156, 282, 877
Bsp143I GATC 3 cut(s) 123, 248, 261
Bsp19I CCATGG 1 cut(s) 300
BspANI GGCC 8 cut(s) 5, 102, 161, 242, 306, 318, 323, 722
BspCNI CTCAG 1 cut(s) 828
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 5 cut(s) 250, 271, 298, 313, 876
BspMAI CTGCAG 2 cut(s) 480, 709
BspPI GGATC 2 cut(s) 243, 256
BspT107I GGYRCC 3 cut(s) 269, 296, 311
BsrFI RCCGGY 3 cut(s) 128, 140, 314
BssAI RCCGGY 3 cut(s) 128, 140, 314
BssECI CCNNGG 7 cut(s) 87, 244, 286, 300, 307, 411, 723
BssMI GATC 3 cut(s) 123, 248, 261
BssNI GRCGYC 5 cut(s) 270, 297, 312, 438, 449
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 6 cut(s) 181, 427, 577, 768, 983, 991
BstACI GRCGYC 5 cut(s) 270, 297, 312, 438, 449
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBAI YACGTR 1 cut(s) 618
BstC8I GCNNGC 6 cut(s) 130, 198, 240, 316, 433, 663
BstDEI CTNAG 1 cut(s) 836
BstDSI CCRYGG 2 cut(s) 286, 300
BstF5I GGATG 3 cut(s) 673, 850, 875
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 3 cut(s) 273, 300, 315
BstHHI GCGC 4 cut(s) 272, 299, 314, 592
BstKTI GATC 3 cut(s) 126, 251, 264
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 3 cut(s) 123, 248, 261
BstMCI CGRYCG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 4 cut(s) 33, 275, 318, 410
BstSFI CTRYAG 2 cut(s) 476, 705
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 6 cut(s) 462, 490, 691, 719, 889, 892
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 842
BsuRI GGCC 8 cut(s) 5, 102, 161, 242, 306, 318, 323, 722
BtgI CCRYGG 2 cut(s) 286, 300
BtsCI GGATG 3 cut(s) 673, 850, 875
BtsIMutI CAGTG 3 cut(s) 773, 987, 988
Cac8I GCNNGC 6 cut(s) 130, 198, 240, 316, 433, 663
CaiI CAGNNNCTG 1 cut(s) 475
CciI TCATGA 1 cut(s) 120
CfoI GCGC 4 cut(s) 272, 299, 314, 592
Cfr10I RCCGGY 3 cut(s) 128, 140, 314
Cfr13I GGNCC 4 cut(s) 241, 304, 317, 322
Cfr42I CCGCGG 1 cut(s) 289
CseI GACGC 4 cut(s) 20, 446, 457, 921
Csp6I GTAC 2 cut(s) 346, 619
CviAII CATG 8 cut(s) 121, 157, 163, 210, 301, 662, 689, 893
CviQI GTAC 2 cut(s) 346, 619
DdeI CTNAG 1 cut(s) 836
DinI GGCGCC 3 cut(s) 271, 298, 313
DpnI GATC 3 cut(s) 125, 250, 263
DpnII GATC 3 cut(s) 123, 248, 261
DraI TTTAAA 1 cut(s) 799
EaeI YGGCCR 2 cut(s) 3, 159
EciI GGCGGA 2 cut(s) 32, 382
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 2 cut(s) 282, 877
Eco88I CYCGRG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 282, 877
EgeI GGCGCC 3 cut(s) 271, 298, 313
EheI GGCGCC 3 cut(s) 271, 298, 313
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 810
FaeI CATG 8 cut(s) 124, 160, 166, 213, 304, 665, 692, 896
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FatI CATG 8 cut(s) 120, 156, 162, 209, 300, 661, 688, 892
FauI CCCGC 2 cut(s) 368, 776
FauNDI CATATG 2 cut(s) 192, 925
FblI GTMKAC 2 cut(s) 174, 333
FokI GGATG 3 cut(s) 680, 857, 882
FriOI GRGCYC 2 cut(s) 282, 877
FspBI CTAG 1 cut(s) 561
GlaI GCGC 4 cut(s) 271, 298, 313, 591
GsaI CCCAGC 1 cut(s) 485
GsuI CTGGAG 1 cut(s) 732
HaeII RGCGCY 3 cut(s) 273, 300, 315
HaeIII GGCC 8 cut(s) 5, 102, 161, 242, 306, 318, 323, 722
HgaI GACGC 4 cut(s) 20, 446, 457, 921
HhaI GCGC 4 cut(s) 272, 299, 314, 592
Hin1I GRCGYC 5 cut(s) 270, 297, 312, 438, 449
Hin1II CATG 8 cut(s) 124, 160, 166, 213, 304, 665, 692, 896
Hin6I GCGC 4 cut(s) 270, 297, 312, 590
HinP1I GCGC 4 cut(s) 270, 297, 312, 590
HincII GTYRAC 2 cut(s) 175, 921
HindII GTYRAC 2 cut(s) 175, 921
HinfI GANTC 2 cut(s) 231, 379
HphI GGTGA 3 cut(s) 475, 640, 763
Hpy166II GTNNAC 4 cut(s) 175, 334, 346, 921
Hpy188I TCNGA 4 cut(s) 230, 248, 827, 879
Hpy188III TCNNGA 4 cut(s) 95, 121, 184, 950
Hpy8I GTNNAC 4 cut(s) 175, 334, 346, 921
Hpy99I CGWCG 2 cut(s) 176, 440
HpyAV CCTTC 2 cut(s) 517, 604
HpyCH4III ACNGT 6 cut(s) 181, 427, 577, 768, 983, 991
HpyCH4IV ACGT 2 cut(s) 617, 819
HpyCH4V TGCA 4 cut(s) 196, 478, 607, 707
HpyF3I CTNAG 1 cut(s) 836
HpySE526I ACGT 2 cut(s) 617, 819
Hsp92I GRCGYC 5 cut(s) 270, 297, 312, 438, 449
Hsp92II CATG 8 cut(s) 124, 160, 166, 213, 304, 665, 692, 896
HspAI GCGC 4 cut(s) 270, 297, 312, 590
KasI GGCGCC 3 cut(s) 269, 296, 311
KroI GCCGGC 2 cut(s) 128, 314
KroNI GCCGGC 2 cut(s) 130, 316
KspI CCGCGG 1 cut(s) 289
Kzo9I GATC 3 cut(s) 123, 248, 261
LmnI GCTCC 2 cut(s) 658, 880
Lsp1109I GCAGC 6 cut(s) 462, 490, 691, 719, 889, 892
MaeI CTAG 1 cut(s) 561
MaeII ACGT 2 cut(s) 617, 819
MaeIII GTNAC 4 cut(s) 730, 788, 977, 991
MalI GATC 3 cut(s) 125, 250, 263
MboI GATC 3 cut(s) 123, 248, 261
MboII GAAGA 3 cut(s) 271, 532, 548
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 3 cut(s) 156, 282, 877
MlsI TGGCCA 2 cut(s) 5, 161
MluCI AATT 2 cut(s) 761, 810
MluNI TGGCCA 2 cut(s) 5, 161
Mly113I GGCGCC 3 cut(s) 270, 297, 312
MmeI TCCRAC 1 cut(s) 208
Mox20I TGGCCA 2 cut(s) 5, 161
MroNI GCCGGC 2 cut(s) 128, 314
MscI TGGCCA 2 cut(s) 5, 161
MseI TTAA 2 cut(s) 219, 798
MslI CAYNNNNRTG 3 cut(s) 161, 602, 666
Msp20I TGGCCA 2 cut(s) 5, 161
MspA1I CMGCKG 3 cut(s) 288, 481, 710
MspR9I CCNGG 4 cut(s) 35, 277, 320, 412
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 2 cut(s) 592, 888
MvnI CGCG 1 cut(s) 288
NaeI GCCGGC 2 cut(s) 130, 316
NarI GGCGCC 3 cut(s) 270, 297, 312
NciI CCSGG 4 cut(s) 35, 277, 320, 412
NcoI CCATGG 1 cut(s) 300
NdeI CATATG 2 cut(s) 192, 925
NdeII GATC 3 cut(s) 123, 248, 261
NgoMIV GCCGGC 2 cut(s) 128, 314
NlaIII CATG 8 cut(s) 124, 160, 166, 213, 304, 665, 692, 896
NlaIV GGNNCC 5 cut(s) 250, 271, 298, 313, 876
NmeAIII GCCGAG 2 cut(s) 68, 288
NmuCI GTSAC 2 cut(s) 730, 788
NspI RCATGY 1 cut(s) 665
OliI CACNNNNGTG 1 cut(s) 602
PaeI GCATGC 1 cut(s) 665
PagI TCATGA 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PctI GAATGC 2 cut(s) 592, 888
PdiI GCCGGC 2 cut(s) 130, 316
PfeI GAWTC 2 cut(s) 231, 379
Pfl23II CGTACG 1 cut(s) 618
PflFI GACNNNGTC 2 cut(s) 179, 821
PluTI GGCGCC 3 cut(s) 273, 300, 315
Ppu21I YACGTR 1 cut(s) 618
PspFI CCCAGC 1 cut(s) 481
PspLI CGTACG 1 cut(s) 618
PspN4I GGNNCC 5 cut(s) 250, 271, 298, 313, 876
PspPI GGNCC 4 cut(s) 241, 304, 317, 322
PstI CTGCAG 2 cut(s) 480, 709
PstNI CAGNNNCTG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 248
PsyI GACNNNGTC 2 cut(s) 179, 821
PvuII CAGCTG 2 cut(s) 481, 710
RsaI GTAC 2 cut(s) 347, 620
RsaNI GTAC 2 cut(s) 346, 619
RseI CAYNNNNRTG 3 cut(s) 161, 602, 666
SacII CCGCGG 1 cut(s) 289
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 219, 798
Sau3AI GATC 3 cut(s) 123, 248, 261
Sau96I GGNCC 4 cut(s) 241, 304, 317, 322
ScrFI CCNGG 4 cut(s) 35, 277, 320, 412
SduI GDGCHC 3 cut(s) 156, 282, 877
SetI ASST 9 cut(s) 66, 77, 202, 483, 528, 620, 712, 822, 998
SfcI CTRYAG 2 cut(s) 476, 705
SfoI GGCGCC 3 cut(s) 271, 298, 313
Sfr303I CCGCGG 1 cut(s) 289
SgrBI CCGCGG 1 cut(s) 289
SmiMI CAYNNNNRTG 3 cut(s) 161, 602, 666
SphI GCATGC 1 cut(s) 665
Sse9I AATT 2 cut(s) 761, 810
SspDI GGCGCC 3 cut(s) 269, 296, 311
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 4 cut(s) 33, 275, 318, 410
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 6 cut(s) 181, 427, 577, 768, 983, 991
TaiI ACGT 2 cut(s) 620, 822
TaqI TCGA 3 cut(s) 150, 174, 264
TaqII GACCGA 1 cut(s) 214
TasI AATT 2 cut(s) 761, 810
TauI GCSGC 4 cut(s) 86, 275, 291, 398
TfiI GAWTC 2 cut(s) 231, 379
Tru1I TTAA 2 cut(s) 219, 798
Tru9I TTAA 2 cut(s) 219, 798
TscAI CASTG 3 cut(s) 773, 988, 994
TseFI GTSAC 2 cut(s) 730, 788
TseI GCWGC 6 cut(s) 475, 478, 704, 707, 902, 905
Tsp45I GTSAC 2 cut(s) 730, 788
TspDTI ATGAA 5 cut(s) 109, 272, 599, 677, 942
TspRI CASTG 3 cut(s) 773, 988, 994
Tth111I GACNNNGTC 2 cut(s) 179, 821
XceI RCATGY 1 cut(s) 665
XmiI GTMKAC 2 cut(s) 174, 333
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.