Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009896

Physical Location & Seq

Genomic Coordinates Forward (+)

12972682 .. 12975542

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCGATAAGAATCACTTTCACTTACTCCACCCATGTTGCTCGGAATCTCGTCGGGACCCGTGTTGGTCCCGGTGGTTACTGCTTTGAATCCTTGGTTCGTCCTAGATTCTTCTCCCACAAGCGTGATTTCGATAGATCTCCTCGGAATCGACCTGCATCGATGTATGGTAGCATCGCGAGGGAGCTCATCGGAGAAGGAAGTCAAAGCCCGCTTGTGATGGGTTTGATCTCGATATTGAAGTCAACGACGGGTCATGAGTCGTCAACGATGAATGTTCTGGGGGTTTCATCTTTCAAGGCTTCTTCTATTATTCCGTTTCTTCAAGGGTCGAAATGGATTAAGAATCCACCGGTGATTGATGACGTGGATAAAGGAGGAACAGTTTGTGATGATGATGATGATAAGGAATCGAGGAATGGAGGAAGTGGATGGGTTAATAAGCTTTTGAGTGTTTGTTCTGAGGATGCTAAGGCTGCTTTCACGGCGGTTACTGTTTCTATCCTTTTTAGATCAGCTCTTGCGGAGCCAAAGTCGATTCCTTCAACGTCTATGTACCCTACCTTGGACAAGGGTGATCGCGTTATGGCGGAGAAGGTCTCATACTTTTTCAGGAAGCCAGAGGTTTCAGATATAGTAATCTTCAAGGCTCCTCCAATTTTGCTGGAATATCCGGAATATGGCTACAGTTCCAATGATGTATTCATAAAAAGGATAGTGGCAAGTGAAGGTGACTGGGTTGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGAAGAAGATTTTGTCTTAGAACCAATGTCATATGAAATGGAACCAATGTTTGTCCCCAAAGGTTATGTCTTTGTCCTTGGTGATAACCGCAACAAAAGCTTTGACTCTCATAACTGGGGTCCACTTCCAATAGAGAACATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAGTATCAGACACCATATACCACGACCAAGCTATCACAAGGGGACCTGTTGCAGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

340

Amino Acids

37.85

Weight (kDa)

6.03

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	157 - 317	1.7e-40	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06870 AT2G30440
fragaria_vesca	FvH4_2g40680 FvH4_2g40680
malus_domestica	MD02G1187600.v1.1 MD06G1221000.v1.1 MD08G1040300.v1.1 MD15G1034800.v1.1
prunus_persica	Prupe.1G388900_v2.0.a1 Prupe.1G388900_v2.0.a1
pyrus_communis	pycom08g03250 pycom15g03200
rosa_chinensis	RchiOBHm_Chr6g0299931
rosa_multiflora	Rmu_co8498643.1_g000001 Rmu_sc0008233.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168260
rosa_rugosa	Rorug06G0293200
rosa_samantha	Rh6AG404700 Rh6BG413000 Rh6CG419100
rosa_wichuraiana	Rw6G035410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AccII	CGCG	2 cut(s)	179, 582
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	5 cut(s)	212, 488, 524, 590, 871
AcoI	YGGCCR	1 cut(s)	950
AfaI	GTAC	2 cut(s)	557, 947
AfiI	CCNNNNNNNGG	2 cut(s)	565, 680
AgeI	ACCGGT	1 cut(s)	352
AgsI	TTSAA	7 cut(s)	89, 241, 298, 326, 546, 646, 743
AjiI	CACGTC	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	6 cut(s)	187, 445, 518, 760, 882, 992
AluI	AGCT	6 cut(s)	187, 445, 518, 760, 882, 992
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	604
Aor13HI	TCCGGA	1 cut(s)	673
AoxI	GGCC	1 cut(s)	950
ApeKI	GCWGC	1 cut(s)	476
ArsI	GACNNNNNNTTYG	2 cut(s)	834, 866
AsiGI	ACCGGT	1 cut(s)	352
AspS9I	GGNCC	4 cut(s)	57, 68, 902, 1004
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	4 cut(s)	367, 587, 743, 875
AvaII	GGWCC	4 cut(s)	57, 68, 902, 1004
BalI	TGGCCA	1 cut(s)	952
BanII	GRGCYC	1 cut(s)	189
BarI	GAAGNNNNNNTAC	2 cut(s)	587, 619
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	214, 426, 746
BceAI	ACGGC	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	685
BfuAI	ACCTGC	1 cut(s)	163
BglII	AGATCT	2 cut(s)	137, 932
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	4 cut(s)	57, 68, 902, 1004
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	4 cut(s)	57, 68, 902, 1004
BmiI	GGNNCC	8 cut(s)	58, 59, 70, 528, 651, 825, 903, 1005
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	2 cut(s)	745, 907
BmsI	GCATC	3 cut(s)	167, 183, 457
BmuI	ACTGGG	2 cut(s)	745, 907
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
Bpu10I	CCTNAGC	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	4 cut(s)	93, 143, 564, 859
BsaWI	WCCGGW	3 cut(s)	352, 673, 942
BsaXI	ACNNNNNCTCC	4 cut(s)	369, 399, 518, 548
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 680
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	3 cut(s)	740, 902, 953
Bse8I	GATNNNNATC	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	673
BseCI	ATCGAT	1 cut(s)	161
BseDI	CCNNGG	4 cut(s)	93, 143, 564, 859
BseGI	GGATG	2 cut(s)	437, 472
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	565, 680
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	3 cut(s)	740, 902, 953
BseRI	GAGGAG	2 cut(s)	132, 642
BseXI	GCAGC	1 cut(s)	463
Bsh1236I	CGCG	2 cut(s)	179, 582
BshFI	GGCC	1 cut(s)	952
BshTI	ACCGGT	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	4 cut(s)	72, 353, 674, 943
BslFI	GGGAC	4 cut(s)	54, 70, 821, 1017
BslI	CCNNNNNNNGG	2 cut(s)	565, 680
BsmAI	GTCTC	1 cut(s)	604
BsmFI	GGGAC	4 cut(s)	54, 70, 821, 1017
BsnI	GGCC	1 cut(s)	952
Bso31I	GGTCTC	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	673
Bsp143I	GATC	5 cut(s)	137, 228, 512, 577, 932
Bsp68I	TCGCGA	1 cut(s)	179
BspACI	CCGC	5 cut(s)	212, 488, 524, 590, 871
BspANI	GGCC	1 cut(s)	952
BspCNI	CTCAG	1 cut(s)	454
BspDI	ATCGAT	1 cut(s)	161
BspEI	TCCGGA	1 cut(s)	673
BspFNI	CGCG	2 cut(s)	179, 582
BspHI	TCATGA	2 cut(s)	256, 1019
BspLI	GGNNCC	8 cut(s)	58, 59, 70, 528, 651, 825, 903, 1005
BspMI	ACCTGC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	740, 902, 953
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	4 cut(s)	93, 143, 564, 859
BssMI	GATC	5 cut(s)	137, 228, 512, 577, 932
BssT1I	CCWWGG	3 cut(s)	93, 564, 859
Bst4CI	ACNGT	3 cut(s)	385, 496, 689
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	462, 471, 799
BstF5I	GGATG	2 cut(s)	437, 472
BstFNI	CGCG	2 cut(s)	179, 582
BstKTI	GATC	5 cut(s)	140, 231, 515, 580, 935
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	5 cut(s)	137, 228, 512, 577, 932
BstMWI	GCNNNNNNNGC	3 cut(s)	476, 485, 879
BstSCI	CCNGG	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	685
BstUI	CGCG	2 cut(s)	179, 582
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	2 cut(s)	137, 932
BstYI	RGATCY	2 cut(s)	137, 932
Bsu15I	ATCGAT	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	952
BsuTUI	ATCGAT	1 cut(s)	161
BtgZI	GCGATG	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	437, 472
BtuMI	TCGCGA	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	212
CciI	TCATGA	2 cut(s)	256, 1019
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	57, 68, 902, 1004
ClaI	ATCGAT	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	556, 946
CspAI	ACCGGT	1 cut(s)	352
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	3 cut(s)	35, 257, 1020
CviQI	GTAC	2 cut(s)	556, 946
DdeI	CTNAG	3 cut(s)	462, 471, 799
DpnI	GATC	5 cut(s)	139, 230, 514, 579, 934
DpnII	GATC	5 cut(s)	137, 228, 512, 577, 932
EaeI	YGGCCR	1 cut(s)	950
EciI	GGCGGA	1 cut(s)	605
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	93, 564, 859
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	604
Eco47I	GGWCC	4 cut(s)	57, 68, 902, 1004
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	2 cut(s)	57, 1004
EcoT14I	CCWWGG	3 cut(s)	93, 564, 859
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	3 cut(s)	93, 564, 859
FaeI	CATG	3 cut(s)	38, 260, 1023
FalI	AAGNNNNNCTT	1 cut(s)	33
FaqI	GGGAC	4 cut(s)	54, 70, 821, 1017
FatI	CATG	3 cut(s)	34, 256, 1019
FauI	CCCGC	1 cut(s)	219
FauNDI	CATATG	1 cut(s)	814
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	2 cut(s)	444, 479
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	952
HapII	CCGG	4 cut(s)	72, 353, 674, 943
Hin1II	CATG	3 cut(s)	38, 260, 1023
HincII	GTYRAC	2 cut(s)	246, 267
HindII	GTYRAC	2 cut(s)	246, 267
HindIII	AAGCTT	2 cut(s)	443, 880
HpaII	CCGG	4 cut(s)	72, 353, 674, 943
HphI	GGTGA	4 cut(s)	367, 587, 743, 875
Hpy166II	GTNNAC	3 cut(s)	246, 267, 905
Hpy188I	TCNGA	6 cut(s)	45, 147, 194, 463, 631, 970
Hpy188III	TCNNGA	8 cut(s)	55, 178, 232, 257, 613, 674, 749, 1020
Hpy8I	GTNNAC	3 cut(s)	246, 267, 905
Hpy99I	CGWCG	2 cut(s)	56, 253
HpyAV	CCTTC	4 cut(s)	191, 552, 589, 722
HpyCH4III	ACNGT	3 cut(s)	385, 496, 689
HpyCH4IV	ACGT	2 cut(s)	366, 548
HpyCH4V	TGCA	3 cut(s)	158, 781, 1013
HpyF10VI	GCNNNNNNNGC	3 cut(s)	476, 485, 879
HpyF3I	CTNAG	3 cut(s)	462, 471, 799
HpySE526I	ACGT	2 cut(s)	366, 548
Hsp92II	CATG	3 cut(s)	38, 260, 1023
KflI	GGGWCCC	1 cut(s)	57
Kpn2I	TCCGGA	1 cut(s)	673
Kzo9I	GATC	5 cut(s)	137, 228, 512, 577, 932
LmnI	GCTCC	3 cut(s)	184, 526, 655
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	3 cut(s)	167, 183, 457
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	2 cut(s)	366, 548
MaeIII	GTNAC	3 cut(s)	77, 490, 731
MalI	GATC	5 cut(s)	139, 230, 514, 579, 934
MboI	GATC	5 cut(s)	137, 228, 512, 577, 932
MboII	GAAGA	7 cut(s)	103, 297, 314, 634, 797, 800, 942
MflI	RGATCY	2 cut(s)	137, 932
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	952
MluCI	AATT	1 cut(s)	657
MluNI	TGGCCA	1 cut(s)	952
MlyI	GAGTC	2 cut(s)	269, 881
MmeI	TCCRAC	1 cut(s)	907
MnlI	CCTC	8 cut(s)	153, 174, 371, 408, 416, 457, 616, 663
Mox20I	TGGCCA	1 cut(s)	952
MroI	TCCGGA	1 cut(s)	673
MscI	TGGCCA	1 cut(s)	952
MseI	TTAA	2 cut(s)	342, 438
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	952
MspI	CCGG	4 cut(s)	72, 353, 674, 943
MspR9I	CCNGG	1 cut(s)	72
MvnI	CGCG	2 cut(s)	179, 582
MwoI	GCNNNNNNNGC	3 cut(s)	476, 485, 879
NciI	CCSGG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	5 cut(s)	137, 228, 512, 577, 932
NlaIII	CATG	3 cut(s)	38, 260, 1023
NlaIV	GGNNCC	8 cut(s)	58, 59, 70, 528, 651, 825, 903, 1005
NmuCI	GTSAC	1 cut(s)	731
NruI	TCGCGA	1 cut(s)	179
OliI	CACNNNNGTG	1 cut(s)	123
PagI	TCATGA	2 cut(s)	256, 1019
PfeI	GAWTC	8 cut(s)	12, 46, 89, 108, 148, 346, 410, 538
PinAI	ACCGGT	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	2 cut(s)	268, 881
PpsI	GAGTC	2 cut(s)	268, 881
PpuMI	RGGWCCY	2 cut(s)	57, 1004
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	2 cut(s)	57, 1004
PspN4I	GGNNCC	8 cut(s)	58, 59, 70, 528, 651, 825, 903, 1005
PspPI	GGNCC	4 cut(s)	57, 68, 902, 1004
PspPPI	RGGWCCY	2 cut(s)	57, 1004
PsuI	RGATCY	2 cut(s)	137, 932
RruI	TCGCGA	1 cut(s)	179
RsaI	GTAC	2 cut(s)	557, 947
RsaNI	GTAC	2 cut(s)	556, 946
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	342, 438
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	5 cut(s)	137, 228, 512, 577, 932
Sau96I	GGNCC	4 cut(s)	57, 68, 902, 1004
SchI	GAGTC	2 cut(s)	269, 881
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	3 cut(s)	167, 183, 457
SfcI	CTRYAG	1 cut(s)	685
SgrAI	CRCCGGYG	1 cut(s)	352
SinI	GGWCC	4 cut(s)	57, 68, 902, 1004
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	1 cut(s)	657
SsiI	CCGC	5 cut(s)	212, 488, 524, 590, 871
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	3 cut(s)	93, 564, 859
TaaI	ACNGT	3 cut(s)	385, 496, 689
TaiI	ACGT	2 cut(s)	369, 551
TaqI	TCGA	7 cut(s)	132, 151, 161, 233, 332, 413, 536
TasI	AATT	1 cut(s)	657
TfiI	GAWTC	8 cut(s)	12, 46, 89, 108, 148, 346, 410, 538
Tru1I	TTAA	2 cut(s)	342, 438
Tru9I	TTAA	2 cut(s)	342, 438
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	5 cut(s)	279, 287, 694, 831, 1008
TspGWI	ACGGA	1 cut(s)	306
VpaK11BI	GGWCC	4 cut(s)	57, 68, 902, 1004
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.